TCONS_00062828 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062828
Unique NameTCONS_00062828
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062828 ID=TCONS_00062828|Name=TCONS_00062828|organism=Clytia hemisphaerica|type=transcript|length=1343bp
ctCTTAGTTAAGGctttaaataaaagaaacatttaaACTGTGAGATAATG
GCAGCAGTTTATACTGCTCtggaataaaagaaaaaatgaagaagaataaa
AGTTAGTTGACATTTTTTCATCAAGGACTGCAACACTCAAGAAATGGCAT
CTGACGAGGCTACGTTAAAAGGTTTAAATGACTTACTGGATGAGTTCTTT
GGACCAACCAGCAACAATGACAGGAAACGGCAAATAGAAGAACTTTTGAA
TAATTTTGGTTTACAAGACGGAGCATGGAGACAGTGTATCTATTTCTTGA
CCAAGTCGTCCAATCAATATGTTCAGATGTATTCTTTCAGTATTTTTgag
aacCTTATAAATCAGAGATGGCATGGTCTACTGGGTGAAGACAAACAACA
GATTCGTAAATTTCTTTACAATTACATGGTCAATAAGTATAATGCAGTGC
CACCTTTTATCCGTAACAAATCCATCAAATCAGTGGTCATCATCGGACGT
TATGATTGGCCAATGTTTTATCCAAACTTCTTCTCGAATATAATCAAACT
TTTGCAAAATCCTGACACATCCTTGGTTGGTGTACTAGCTCTACAAATGA
TCTCAGAAGAATTCATCTCACCCAGGGAAGACTTGAGCATGCAACGGCGA
CAAGAACTGAAAGAATCCTTATTACAACATATTCCCAATGCACTACACAT
TTTAACAGAACTACTCACATCTATATCACACAAGTTTAAACATATCGTCA
GCACAGTTACACCACCGCCCTCGCCTATACAACGCTCACCCTACACCACG
CCCAACCATTCACCCATACACCGTCTCACTGTTCCCGGCTCCACCACGTC
GCCGCAAAAGATTGAGGCCGTCGTCATGTCAGCTCAGTCAGAGGAGCTTT
GTATAGCGATTTTTGACTGTTTAACACAATATATTTCTTGGTTGCCACTT
TCACGTTTCATTACGCCCAGCCTTGTGACAAAGATTTTCAACTACGCAGA
ATACGGATGTAATCTAGCTGTCATGAAAGGTTCAGATAAAGTGATTGGGA
CGAAAGTAGGTATCAATGCTATGAGTTGCATCAACGAGATCCTATCAAAG
AAGTTCATCCCCGCAGAATACGAATCATTCCTCTTCCAAATGTTTCAACA
GACTTTCAAACTGCTACAAGTGATGACGTCTGGCAGTGAAGGAGGGGTTC
TCAAAACTGTCGATGAGAGGTGTGATTTCGTTGTTTGAATTCCAAAGTTT
TCTTAGAAAACTTTCAATTCTAGATTGTGAagcaaacattcaaaaagtgc
ACGATACAGTTATAATGTTTTATGaatataaaaatatcttttt
Run BLAST on NCBI

protein sequence of TCONS_00062828-protein

>TCONS_00062828-protein ID=TCONS_00062828-protein|Name=TCONS_00062828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
MASDEATLKGLNDLLDEFFGPTSNNDRKRQIEELLNNFGLQDGAWRQCIY
FLTKSSNQYVQMYSFSIFENLINQRWHGLLGEDKQQIRKFLYNYMVNKYN
AVPPFIRNKSIKSVVIIGRYDWPMFYPNFFSNIIKLLQNPDTSLVGVLAL
QMISEEFISPREDLSMQRRQELKESLLQHIPNALHILTELLTSISHKFKH
IVSTVTPPPSPIQRSPYTTPNHSPIHRLTVPGSTTSPQKIEAVVMSAQSE
ELCIAIFDCLTQYISWLPLSRFITPSLVTKIFNYAEYGCNLAVMKGSDKV
IGTKVGINAMSCINEILSKKFIPAEYESFLFQMFQQTFKLLQVMTSGSEG
GVLKTVDERCDFVV
Run BLAST on NCBI

transcript from alignment at scaffold_372:168628..171866-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062828 ID=TCONS_00062828|Name=TCONS_00062828|organism=Clytia hemisphaerica|type=transcript|length=3239bp|location=Sequence derived from alignment at scaffold_372:168628..171866- (Clytia hemisphaerica)
CTCTTAGTTAAGGCTTTAAATAAAAGAAACATTTAAACTGTGAGATAATG
GCAGCAGTTTATACTGCTCTGGAATAAAAGAAAAAATGAAGAAGAATAAA
AGTTAGTTGACATTTTTTCATCAAGGACTGCAACACTCAAGAAATGGTAA
GCACAATGTTTTTATTGATTTATGACAAAAAAATCTACCATTTACTTGAA
CAGAATTTTAAACAAAAGAATAACAATTTTCTCCCCTTTCAGTCCTGCGC
GAGCACAAATTTTGAAAAATCCTTTTGTTTTTCTGCTTTGTCACTTTTTA
CCAATTCTTTCATAAGAAAAATAACTATGGTATAGTATTTTGTGTTTCCA
TGTGTTTTTTCTTTTCGTATCACATTTAAGGCATCTGACGAGGCTACGTT
AAAAGGTTTAAATGACTTACTGGATGAGTTCTTTGGACCAACCAGCAACA
ATGACAGGAAACGGCAAATAGGTAATTCTTTTCCAAAGGAATGTATTAGG
GTCGTATATATGTTGTTTGTAGGAAGAAATATAACAATTGTCCATACTTT
CTCTTTCTATGTGATATGCTCAAGAAAAAAACCTGAAATGCCTCTAGTTG
GAATATCCACTTTTGAACAGCAAAGTCCTTAGGGCCAAAATCTCATATTC
GTATTCATGCAATATCACATAATATGATACCATTTGAAAGTTTTCAAAAT
AGAATACTTTTATCAGGTATAACTTCCTCACTCGGGATTCAAATTGAAGT
TTATCTTTACTTTGCTTGACAAAATGACCATAAACCACTAAATTTCTAAT
GTTTCTTTTACCAGAAGAACTTTTGAATAATTTTGGTTTACAAGACGGAG
CATGGAGACAGTGTATCTATTTCTTGACCAAGTCGTCCAATCAATATGTT
CAGATGTATTCTTTCAGTATTTTTGAGGTATTTTTATTTTTATTATAGAT
CTCAAAAATATAAATTTGACCTGTGTATCCCTGGATTGAATAATTGATAT
TTTGGCTAGTAACCATATACTCAAAATTCTTGAGAAGGACAATTTGAAAA
GCTGGTGGCATATGTTATTATTATCTATCAAGAATTAGTGTAGGAACAAC
ATGGGCCTTGTCACTAAGTTAGGAAATATTCAAATCCTACAGTTCTTCCA
GCCTTAGTCTACACTTTGTGAAAACTACTGCTCCACTCAATCATAAAGAA
TTGTATAATTTTTTGTTTGTTTTTTTAGAACCTTATAAATCAGAGATGGC
ATGGTCTACTGGGTGAAGACAAACAACAGATTCGTAAATTTCTTTACAAT
TACATGGTCAATAAGTATAATGCAGTGCCACCTTTTATCCGTAACAAATC
CATCAAATCAGTGGTCATCATCGGACGTTATGATTGGCCAATGTTTTATC
CAAACTTCTTCTCGAATATAATCAAAGTAAGTTTAAATGTTGGGACCGAA
TTTTCTGAAAGGGTTCAAGATTTTTTAAAGATATTCGAGAAACAAAATAC
ACAACTTCCGTTTTGTTATTAAGAGGGTTTATGGTCAAATGACACACCAA
TTCAACGATTTTCCAAGATTTCCGTGCATATTCACATAAGCTAGTTGCAA
CACCTGGGTATAGTCAATGTTTATGGAGCTGTTTTAAGGAGATACGCTAG
TTTTGGAATAGGCTTCTAGCTTTACTGGAGAGTAAAGAGGGAGTGCCATT
CAAATACTGAATGATTTTATACGGTAATTGGTGTTATCTTTCAACTAAAA
CAAGAGTTTTTTGCTGGGTACTTTACAGTAAGGTTCTTCCAAAATGGCAT
TCTATTCATGGCTGATTTTGAATACCACAATAGAATGCAGCTGCTGAAAA
TCTAAAATGTTTACATTTTTCTTAATTCTAGCTTTTGCAAAATCCTGACA
CATCCTTGGTTGGTGTACTAGCTCTACAAATGATCTCAGAAGAATTCATC
TCACCCAGGGAAGACTTGAGCATGCAACGGCGACAAGAACTGAAAGAATC
CTTATTACAACATATTCCCAATGCACTACACATTTTAACAGAACTACTCA
CATCTATATCACACAAGTTTAAACATATCGTCAGCACAGTTACACCACCG
CCCTCGCCTATACAACGCTCACCCTACACCACGCCCAACCATTCACCCAT
ACACCGTCTCACTGTTCCCGGCTCCACCACGTCGCCGCAAAAGATTGAGG
CCGTCGTCATGTCAGCTCAGTCAGAGGAGCTTTGTATAGCGATTTTTGAC
TGTTTAACACAATATATTTCTTGGTTGCCACTTTCACGTTTCATTACGCC
CAGCCTTGTGACAAAGATTTTCAACTACGCAGAATACGGATGTAATCTAG
CTGTCATGAAAGGTTCAGATAAAGTGATTGGGACGAAAGTAGGTCAGTAG
ACATTTACTTTAAAGATTCTTAGATTTTCAGGCTTTTCGTTAACAGTTTA
GAGTAATAACTAGAAAAGTTTTGACAAATTTCAGCCTTCAAAATGTTTTT
ATAATCTGGGATATCTGAATTGAAATTCTGAAAATCGATATTATCCATAT
TCTCCCATTTCGCAGACGCTGCTCGTATGCATCTCCATTGAATCTCCTTA
TTTTCAGCTAAAATTAACAATTTGAAAATTATAATCCTCTCAGGACCACA
GAAGTAATAAAATTTCTAACAATTTAGGGCTACTTAGACTACACAATATA
TTGATGAGCAATAGTCGACAATATAGTTTTCGGACCGTAATGTACGGAGT
AAACAACATGTGCTCTATTATAAACAATTAAGTATGGGAACACGATTCAG
AGGTTTTCCTCAACTGAAACAAATGTATTGGTCAGAAAGGACGTCTTTCC
CAGAATAAGCAAATAGAATGCTTTGTGGATAAGAAATATACTTTAATGTT
GGTCATGGTTAGACTTTGAATAAGTCAATAGAATTATACTTTTCTCTTTT
TCTAGGTATCAATGCTATGAGTTGCATCAACGAGATCCTATCAAAGAAGT
TCATCCCCGCAGAATACGAATCATTCCTCTTCCAAATGTTTCAACAGACT
TTCAAACTGCTACAAGTGATGACGTCTGGCAGTGAAGGAGGGGTTCTCAA
AACTGTCGATGAGAGGTGTGATTTCGTTGTTTGAATTCCAAAGTTTTCTT
AGAAAACTTTCAATTCTAGATTGTGAAGCAAACATTCAAAAAGTGCACGA
TACAGTTATAATGTTTTATGAATATAAAAATATCTTTTT

Coding sequence (CDS) from alignment at scaffold_372:168628..171866-

>TCONS_00062828 ID=TCONS_00062828|Name=TCONS_00062828|organism=Clytia hemisphaerica|type=CDS|length=6570bp|location=Sequence derived from alignment at scaffold_372:168628..171866- (Clytia hemisphaerica)
GTATCAATGCTATGAGTTGCATCAACGAGATCCTATCAAAGAAGTTCATC
CCCGCAGAATACGAATCATTCCTCTTCCAAATGTTTCAACAGACTTTCAA
ACTGCTACAAGTGATGACGTCTGGCAGTGAAGGAGGGGTTCTCAAAACTG
TCGATGAGAGGTGTGATTTCGTTGTTTGACTTTTGCAAAATCCTGACACA
TCCTTGGTTGGTGTACTAGCTCTACAAATGATCTCAGAAGAATTCATCTC
ACCCAGGGAAGACTTGAGCATGCAACGGCGACAAGAACTGAAAGAATCCT
TATTACAACATATTCCCAATGCACTACACATTTTAACAGAACTACTCACA
TCTATATCACACAAGTTTAAACATATCGTCAGCACAGTTACACCACCGCC
CTCGCCTATACAACGCTCACCCTACACCACGCCCAACCATTCACCCATAC
ACCGTCTCACTGTTCCCGGCTCCACCACGTCGCCGCAAAAGATTGAGGCC
GTCGTCATGTCAGCTCAGTCAGAGGAGCTTTGTATAGCGATTTTTGACTG
TTTAACACAATATATTTCTTGGTTGCCACTTTCACGTTTCATTACGCCCA
GCCTTGTGACAAAGATTTTCAACTACGCAGAATACGGATGTAATCTAGCT
GTCATGAAAGGTTCAGATAAAGTGATTGGGACGAAAGTAGAACCTTATAA
ATCAGAGATGGCATGGTCTACTGGGTGAAGACAAACAACAGATTCGTAAA
TTTCTTTACAATTACATGGTCAATAAGTATAATGCAGTGCCACCTTTTAT
CCGTAACAAATCCATCAAATCAGTGGTCATCATCGGACGTTATGATTGGC
CAATGTTTTATCCAAACTTCTTCTCGAATATAATCAAAAAGAACTTTTGA
ATAATTTTGGTTTACAAGACGGAGCATGGAGACAGTGTATCTATTTCTTG
ACCAAGTCGTCCAATCAATATGTTCAGATGTATTCTTTCAGTATTTTTGA
GGCATCTGACGAGGCTACGTTAAAAGGTTTAAATGACTTACTGGATGAGT
TCTTTGGACCAACCAGCAACAATGACAGGAAACGGCAAATAGATGGTATC
AATGCTATGAGTTGCATCAACGAGATCCTATCAAAGAAGTTCATCCCCGC
AGAATACGAATCATTCCTCTTCCAAATGTTTCAACAGACTTTCAAACTGC
TACAAGTGATGACGTCTGGCAGTGAAGGAGGGGTTCTCAAAACTGTCGAT
GAGAGGTGTGATTTCGTTGTTTGACTTTTGCAAAATCCTGACACATCCTT
GGTTGGTGTACTAGCTCTACAAATGATCTCAGAAGAATTCATCTCACCCA
GGGAAGACTTGAGCATGCAACGGCGACAAGAACTGAAAGAATCCTTATTA
CAACATATTCCCAATGCACTACACATTTTAACAGAACTACTCACATCTAT
ATCACACAAGTTTAAACATATCGTCAGCACAGTTACACCACCGCCCTCGC
CTATACAACGCTCACCCTACACCACGCCCAACCATTCACCCATACACCGT
CTCACTGTTCCCGGCTCCACCACGTCGCCGCAAAAGATTGAGGCCGTCGT
CATGTCAGCTCAGTCAGAGGAGCTTTGTATAGCGATTTTTGACTGTTTAA
CACAATATATTTCTTGGTTGCCACTTTCACGTTTCATTACGCCCAGCCTT
GTGACAAAGATTTTCAACTACGCAGAATACGGATGTAATCTAGCTGTCAT
GAAAGGTTCAGATAAAGTGATTGGGACGAAAGTAGAACCTTATAAATCAG
AGATGGCATGGTCTACTGGGTGAAGACAAACAACAGATTCGTAAATTTCT
TTACAATTACATGGTCAATAAGTATAATGCAGTGCCACCTTTTATCCGTA
ACAAATCCATCAAATCAGTGGTCATCATCGGACGTTATGATTGGCCAATG
TTTTATCCAAACTTCTTCTCGAATATAATCAAAAAGAACTTTTGAATAAT
TTTGGTTTACAAGACGGAGCATGGAGACAGTGTATCTATTTCTTGACCAA
GTCGTCCAATCAATATGTTCAGATGTATTCTTTCAGTATTTTTGAGGCAT
CTGACGAGGCTACGTTAAAAGGTTTAAATGACTTACTGGATGAGTTCTTT
GGACCAACCAGCAACAATGACAGGAAACGGCAAATAGATGGTATCAATGC
TATGAGTTGCATCAACGAGATCCTATCAAAGAAGTTCATCCCCGCAGAAT
ACGAATCATTCCTCTTCCAAATGTTTCAACAGACTTTCAAACTGCTACAA
GTGATGACGTCTGGCAGTGAAGGAGGGGTTCTCAAAACTGTCGATGAGAG
GTGTGATTTCGTTGTTTGACTTTTGCAAAATCCTGACACATCCTTGGTTG
GTGTACTAGCTCTACAAATGATCTCAGAAGAATTCATCTCACCCAGGGAA
GACTTGAGCATGCAACGGCGACAAGAACTGAAAGAATCCTTATTACAACA
TATTCCCAATGCACTACACATTTTAACAGAACTACTCACATCTATATCAC
ACAAGTTTAAACATATCGTCAGCACAGTTACACCACCGCCCTCGCCTATA
CAACGCTCACCCTACACCACGCCCAACCATTCACCCATACACCGTCTCAC
TGTTCCCGGCTCCACCACGTCGCCGCAAAAGATTGAGGCCGTCGTCATGT
CAGCTCAGTCAGAGGAGCTTTGTATAGCGATTTTTGACTGTTTAACACAA
TATATTTCTTGGTTGCCACTTTCACGTTTCATTACGCCCAGCCTTGTGAC
AAAGATTTTCAACTACGCAGAATACGGATGTAATCTAGCTGTCATGAAAG
GTTCAGATAAAGTGATTGGGACGAAAGTAGAACCTTATAAATCAGAGATG
GCATGGTCTACTGGGTGAAGACAAACAACAGATTCGTAAATTTCTTTACA
ATTACATGGTCAATAAGTATAATGCAGTGCCACCTTTTATCCGTAACAAA
TCCATCAAATCAGTGGTCATCATCGGACGTTATGATTGGCCAATGTTTTA
TCCAAACTTCTTCTCGAATATAATCAAAAAGAACTTTTGAATAATTTTGG
TTTACAAGACGGAGCATGGAGACAGTGTATCTATTTCTTGACCAAGTCGT
CCAATCAATATGTTCAGATGTATTCTTTCAGTATTTTTGAGGCATCTGAC
GAGGCTACGTTAAAAGGTTTAAATGACTTACTGGATGAGTTCTTTGGACC
AACCAGCAACAATGACAGGAAACGGCAAATAGATGGTATCAATGCTATGA
GTTGCATCAACGAGATCCTATCAAAGAAGTTCATCCCCGCAGAATACGAA
TCATTCCTCTTCCAAATGTTTCAACAGACTTTCAAACTGCTACAAGTGAT
GACGTCTGGCAGTGAAGGAGGGGTTCTCAAAACTGTCGATGAGAGGTGTG
ATTTCGTTGTTTGACTTTTGCAAAATCCTGACACATCCTTGGTTGGTGTA
CTAGCTCTACAAATGATCTCAGAAGAATTCATCTCACCCAGGGAAGACTT
GAGCATGCAACGGCGACAAGAACTGAAAGAATCCTTATTACAACATATTC
CCAATGCACTACACATTTTAACAGAACTACTCACATCTATATCACACAAG
TTTAAACATATCGTCAGCACAGTTACACCACCGCCCTCGCCTATACAACG
CTCACCCTACACCACGCCCAACCATTCACCCATACACCGTCTCACTGTTC
CCGGCTCCACCACGTCGCCGCAAAAGATTGAGGCCGTCGTCATGTCAGCT
CAGTCAGAGGAGCTTTGTATAGCGATTTTTGACTGTTTAACACAATATAT
TTCTTGGTTGCCACTTTCACGTTTCATTACGCCCAGCCTTGTGACAAAGA
TTTTCAACTACGCAGAATACGGATGTAATCTAGCTGTCATGAAAGGTTCA
GATAAAGTGATTGGGACGAAAGTAGAACCTTATAAATCAGAGATGGCATG
GTCTACTGGGTGAAGACAAACAACAGATTCGTAAATTTCTTTACAATTAC
ATGGTCAATAAGTATAATGCAGTGCCACCTTTTATCCGTAACAAATCCAT
CAAATCAGTGGTCATCATCGGACGTTATGATTGGCCAATGTTTTATCCAA
ACTTCTTCTCGAATATAATCAAAAAGAACTTTTGAATAATTTTGGTTTAC
AAGACGGAGCATGGAGACAGTGTATCTATTTCTTGACCAAGTCGTCCAAT
CAATATGTTCAGATGTATTCTTTCAGTATTTTTGAGGCATCTGACGAGGC
TACGTTAAAAGGTTTAAATGACTTACTGGATGAGTTCTTTGGACCAACCA
GCAACAATGACAGGAAACGGCAAATAGATGGTATCAATGCTATGAGTTGC
ATCAACGAGATCCTATCAAAGAAGTTCATCCCCGCAGAATACGAATCATT
CCTCTTCCAAATGTTTCAACAGACTTTCAAACTGCTACAAGTGATGACGT
CTGGCAGTGAAGGAGGGGTTCTCAAAACTGTCGATGAGAGGTGTGATTTC
GTTGTTTGACTTTTGCAAAATCCTGACACATCCTTGGTTGGTGTACTAGC
TCTACAAATGATCTCAGAAGAATTCATCTCACCCAGGGAAGACTTGAGCA
TGCAACGGCGACAAGAACTGAAAGAATCCTTATTACAACATATTCCCAAT
GCACTACACATTTTAACAGAACTACTCACATCTATATCACACAAGTTTAA
ACATATCGTCAGCACAGTTACACCACCGCCCTCGCCTATACAACGCTCAC
CCTACACCACGCCCAACCATTCACCCATACACCGTCTCACTGTTCCCGGC
TCCACCACGTCGCCGCAAAAGATTGAGGCCGTCGTCATGTCAGCTCAGTC
AGAGGAGCTTTGTATAGCGATTTTTGACTGTTTAACACAATATATTTCTT
GGTTGCCACTTTCACGTTTCATTACGCCCAGCCTTGTGACAAAGATTTTC
AACTACGCAGAATACGGATGTAATCTAGCTGTCATGAAAGGTTCAGATAA
AGTGATTGGGACGAAAGTAGAACCTTATAAATCAGAGATGGCATGGTCTA
CTGGGTGAAGACAAACAACAGATTCGTAAATTTCTTTACAATTACATGGT
CAATAAGTATAATGCAGTGCCACCTTTTATCCGTAACAAATCCATCAAAT
CAGTGGTCATCATCGGACGTTATGATTGGCCAATGTTTTATCCAAACTTC
TTCTCGAATATAATCAAAAAGAACTTTTGAATAATTTTGGTTTACAAGAC
GGAGCATGGAGACAGTGTATCTATTTCTTGACCAAGTCGTCCAATCAATA
TGTTCAGATGTATTCTTTCAGTATTTTTGAGGCATCTGACGAGGCTACGT
TAAAAGGTTTAAATGACTTACTGGATGAGTTCTTTGGACCAACCAGCAAC
AATGACAGGAAACGGCAAATAGATGGTATCAATGCTATGAGTTGCATCAA
CGAGATCCTATCAAAGAAGTTCATCCCCGCAGAATACGAATCATTCCTCT
TCCAAATGTTTCAACAGACTTTCAAACTGCTACAAGTGATGACGTCTGGC
AGTGAAGGAGGGGTTCTCAAAACTGTCGATGAGAGGTGTGATTTCGTTGT
TTGACTTTTGCAAAATCCTGACACATCCTTGGTTGGTGTACTAGCTCTAC
AAATGATCTCAGAAGAATTCATCTCACCCAGGGAAGACTTGAGCATGCAA
CGGCGACAAGAACTGAAAGAATCCTTATTACAACATATTCCCAATGCACT
ACACATTTTAACAGAACTACTCACATCTATATCACACAAGTTTAAACATA
TCGTCAGCACAGTTACACCACCGCCCTCGCCTATACAACGCTCACCCTAC
ACCACGCCCAACCATTCACCCATACACCGTCTCACTGTTCCCGGCTCCAC
CACGTCGCCGCAAAAGATTGAGGCCGTCGTCATGTCAGCTCAGTCAGAGG
AGCTTTGTATAGCGATTTTTGACTGTTTAACACAATATATTTCTTGGTTG
CCACTTTCACGTTTCATTACGCCCAGCCTTGTGACAAAGATTTTCAACTA
CGCAGAATACGGATGTAATCTAGCTGTCATGAAAGGTTCAGATAAAGTGA
TTGGGACGAAAGTAGAACCTTATAAATCAGAGATGGCATGGTCTACTGGG
TGAAGACAAACAACAGATTCGTAAATTTCTTTACAATTACATGGTCAATA
AGTATAATGCAGTGCCACCTTTTATCCGTAACAAATCCATCAAATCAGTG
GTCATCATCGGACGTTATGATTGGCCAATGTTTTATCCAAACTTCTTCTC
GAATATAATCAAAAAGAACTTTTGAATAATTTTGGTTTACAAGACGGAGC
ATGGAGACAGTGTATCTATTTCTTGACCAAGTCGTCCAATCAATATGTTC
AGATGTATTCTTTCAGTATTTTTGAGGCATCTGACGAGGCTACGTTAAAA
GGTTTAAATGACTTACTGGATGAGTTCTTTGGACCAACCAGCAACAATGA
CAGGAAACGGCAAATAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039357XLOC_039357Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062828-proteinTCONS_00062828-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062828-exon-scaffold_372-1575043694:171721..171866TCONS_00062828-exon-scaffold_372-1575043694:171721..171866Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1575043694:171396..171486TCONS_00062828-exon-scaffold_372-1575043694:171396..171486Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1575043694:170940..171052TCONS_00062828-exon-scaffold_372-1575043694:170940..171052Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1575043694:170441..170638TCONS_00062828-exon-scaffold_372-1575043694:170441..170638Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1575043694:169475..169985TCONS_00062828-exon-scaffold_372-1575043694:169475..169985Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1575043694:168628..168911TCONS_00062828-exon-scaffold_372-1575043694:168628..168911Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1510915933:171721..171866TCONS_00062828-exon-scaffold_372-1510915933:171721..171866Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1510915933:171396..171486TCONS_00062828-exon-scaffold_372-1510915933:171396..171486Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1510915933:170940..171052TCONS_00062828-exon-scaffold_372-1510915933:170940..171052Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1510915933:170441..170638TCONS_00062828-exon-scaffold_372-1510915933:170441..170638Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1510915933:169475..169985TCONS_00062828-exon-scaffold_372-1510915933:169475..169985Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1510915933:168628..168911TCONS_00062828-exon-scaffold_372-1510915933:168628..168911Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1491911889:171721..171866TCONS_00062828-exon-scaffold_372-1491911889:171721..171866Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1491911889:171396..171486TCONS_00062828-exon-scaffold_372-1491911889:171396..171486Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1491911889:170940..171052TCONS_00062828-exon-scaffold_372-1491911889:170940..171052Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1491911889:170441..170638TCONS_00062828-exon-scaffold_372-1491911889:170441..170638Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1491911889:169475..169985TCONS_00062828-exon-scaffold_372-1491911889:169475..169985Clytia hemisphaericaexon
TCONS_00062828-exon-scaffold_372-1491911889:168628..168911TCONS_00062828-exon-scaffold_372-1491911889:168628..168911Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_372supercontigscaffold_372:168628..171866 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.37997	4.82031	2.72757	2.39126	41.0089	33.4726	32.8617	38.6348	21.4864	28.8023	26.308	19.9192	21.7849	21.5002	22.1706	25.0317	22.2646	24.2889	16.296	20.3239	22.3235	24.9198	19.8727	25.9267	26.0657	28.2094	28.0986	23.4865	36.1482	37.7137
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001494Importin-beta_N
IPR013598Exportin-1/Importin-b-like
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0008536Ran GTPase binding
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
molecular_function GO:0005488 binding
molecular_function GO:0008536 Ran GTPase binding
Blast
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BLAST of TCONS_00062828 vs. Swiss-Prot (Human)
Match: XPO6 (Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 2.580e-94
Identity = 160/378 (42.33%), Postives = 237/378 (62.70%), Query Frame = 3 
Query:  144 MASDEATLKGLNDLLDEFFGPTSNNDRKRQIEELLNNFGLQDGAWRQCIYFLTKSSNQYVQMYSFSIFENLINQRWHGLLGEDKQQIRKFLYNYMVNKYNAVPPFIRNKSIKSVVIIGRYDWPMFYPNFFSNIIKLLQNPDTSLVGVLALQMISEEFISPREDLSMQRRQELKESLLQHIPNALHILTELLTSISHKFKHIVSTVTPPPSP-------IQRSPYTTPNHSPIHRLTVPGSTTSPQKIEAVVMSAQSEELCIAIFDCLTQYISWLPLSRFITPSLVTKIFNYAEYGCN-----LAVMKGSDK--VIGT---KVGINAMSCINEILSKKFIPAEYESFLFQMFQQTFKLLQVMTSGSEGGVLKTVDERCD 1226
            MAS+EA+L+ L  L+ EFF   + N+RKR+IEELLNNF  Q GAWR C+YFL+ + N YV MYS ++FENLIN+ W G+  +DK +IR  L   ++  +  +P FIRNK  K +V IGR DWPMFY +FF+NI++L+Q+P T+ +G++ L+  SEE   PREDLS+ R++EL++ LL  +   L +LT +L ++    KH V+  TPPPSP       +  +   +P+ + +    +P            ++  +SE +C    +CL    SW+PLS  ITPSL+T IF++A +GC+     +A + GS +  V G    ++G+ AMSCINE++SK  +P E+E +L +MFQQTF LLQ +T  +    +K+  E  D
Sbjct:    1 MASEEASLRALESLMTEFFHDCTTNERKREIEELLNNFAQQIGAWRFCLYFLSSTRNDYVMMYSLTVFENLINKMWLGVPSQDKMEIRSCLPKLLLAHHKTLPYFIRNKLCKVIVDIGRQDWPMFYHDFFTNILQLIQSPVTTPLGLIMLKTTSEELACPREDLSVARKEELRKLLLDQVQTVLGLLTGILETVWD--KHSVTAATPPPSPTSGESGDLLSNLLQSPSSAKLLNQPIP------------ILDVESEYICSLALECLAHLFSWIPLSASITPSLLTTIFHFARFGCDIRARKMASVNGSSQNCVSGQERGRLGVLAMSCINELMSKNCVPMEFEEYLLRMFQQTFYLLQKITKDNNAHTVKSRLEELD 364
The following BLAST results are available for this feature:
BLAST of TCONS_00062828 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XPO62.580e-9442.33Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1[more]
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