TCONS_00063956-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00063956-protein
Unique Name	TCONS_00063956-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	351

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00063956-protein ID=TCONS_00063956-protein|Name=TCONS_00063956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MNFSNWNVTQFTNWTQPEHGHNLTHEFSTTLGIFFILLPIIAIVCNVVLI
GTVVTNRTLHNSTNAFIISLAVSDLLIAMFVIPQDALFLLKGYHVGGRIS
CGFKEALFFLSLPASVLNLLLLTVERYTKIISPYKHRFVFCKRNTAIMLT
LLWLYTIGVALYPILNPLVVHGYLPIFVFNGVCWLQFSLTYVFFQLCANF
MAPTFITLILNGLMLAVAQKHSKSISQLSISQGNKQSCTSVSWVHILRNM
KAAKTIALLVGVFLTCWLTFLITAIINVRCNECLRRELTWAANGINYTSC
ALNPIIYGLLNRPIRNALPFKKTRKLKHSVSEATKLLRNKIPKCDISSSW
V

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040081	XLOC_040081	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00063956	TCONS_00063956	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 30..54 score: 17.08 coord: 144..165 score: 15.41 coord: 289..315 score: 26.57 coord: 252..276 score: 28.69 coord: 192..215 score: 17.72 coord: 108..130 score: 28.95 coord: 63..84 score: 37.22
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 46..307 e-value: 1.3E-37 score: 129.4
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 114..130
None	No IPR available	GENE3D	1.20.1070.10		coord: 2..341 e-value: 5.2E-56 score: 189.4
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 10..319
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 45..307 score: 31.706

Blast

[Close]

BLAST of TCONS_00063956-protein vs. Swiss-Prot (Human)
Match: ADA1A (Alpha-1A adrenergic receptor OS=Homo sapiens GN=ADRA1A PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 3.364e-28
Identity = 86/348 (24.71%), Postives = 164/348 (47.13%), Query Frame = 0

Query:    1 MNFSNWNVTQFTNWTQPEHGHNLTHEFSTTLGIFFILLPIIAIVCNVVLIGTVVTNRTLHNSTNAFIISLAVSDLLIAMFVIPQDALFLLKGYHVGGRISCGFKEALFFLSLPASVLNLLLLTVERYTKIISPYKHRFVFCKRNTAIMLTLLWLYTIGVALYPILNPLVVHGYLPIFVFNGVCWLQFSLTYVFFQLCANFMAPTFITLILNGLMLAVAQKHSKSI-SQLSISQGNKQSCT------------------------SVSWVHILRNMKAAKTIALLVGVFLTCWLTFLITAII-----NVRCNECLRRELTWAANGINYTSCALNPIIYGLLNRPIRNAL 318
            M F + N +  +N TQP    N++   +  LG+    L +  ++ N+++I +V  +R LH+ T+ +I++LAV+DLL+   V+P  A+F + GY   GR+ C    A+  L   AS++ L +++++RY  +  P ++  +  +R   + L  +W  ++ +++ P+          P      +C +     YV F    +F  P  I L++   +  VA++ S+ + S L   + + +  T                        SV  +   R  KAAKT+ ++VG F+ CWL F +   I     + + +E + + + W    + Y +  +NPIIY   ++  + A 
Sbjct:    1 MVFLSGNASDSSNCTQPPAPVNISK--AILLGVILGGLILFGVLGNILVILSVACHRHLHSVTHYYIVNLAVADLLLTSTVLPFSAIFEVLGYWAFGRVFCNIWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQRRGLMALLCVWALSLVISIGPLFG-----WRQPAPEDETICQINEEPGYVLFSALGSFYLPLAIILVMYCRVYVVAKRESRGLKSGLKTDKSDSEQVTLRIHRKNAPAGGSGMASAKTKTHFSVRLLKFSREKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPDFKPSETVFKIVFW----LGYLNSCINPIIYPCSSQEFKKAF 337

The following BLAST results are available for this feature:

BLAST of TCONS_00063956-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00063956-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADA1A	3.364e-28	24.71	Alpha-1A adrenergic receptor OS=Homo sapiens GN=AD...	[more]

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TCONS_00063956-protein (polypeptide) - C. hemisphaerica