TCONS_00065403-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065403-protein
Unique NameTCONS_00065403-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065403-protein ID=TCONS_00065403-protein|Name=TCONS_00065403-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MATAQAQREEVEEMEDDGGPILINKLEQHGISASDIKKLSEAGYYTIESL
AYTPKKTLLAIKGISEAKADKILNEVLKLVPMGFTTATEFHQKRSEIIQV
TTGSKELDKLLQGGIETGSITEIFGEFRTGKTQICHQLCVTCQLPVDCGG
AEGKAMYVDTEGTFRPERLLAVAEKYKLNGQEVLDNVAYARAYNSDHQTQ
LLIHASAMMSESRYALLIVDSATALYRTDYAGRGELSARQMHMARFLRTL
LGLADQYGVAVVITNQVVAQVDGASMFQADPKKPIGGNIMAHASTTRLYL
RKGRGETRICKIYDSPCLPEAEAMFAIYPDGIGDSKD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040993XLOC_040993Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065403TCONS_00065403Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR016467DNA_recomb/repair_RecA-like
IPR011941DNA_recomb/repair_Rad51
IPR013632DNA_recomb/repair_Rad51_C
IPR020588RecA_ATP-bd
IPR020587RecA_monomer-monomer_interface
IPR033925Rad51_DMC1_RadA
IPR027417P-loop_NTPase
IPR010995DNA_repair_Rad51/TF_NusA_a-hlx
Vocabulary: Molecular Function
TermDefinition
GO:0008094DNA-dependent ATPase activity
GO:0003690double-stranded DNA binding
GO:0000150recombinase activity
GO:0003697single-stranded DNA binding
GO:0005524ATP binding
GO:0003677DNA binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0000724double-strand break repair via homologous recombination
GO:1990426mitotic recombination-dependent replication fork processing
GO:0006281DNA repair
GO:0006259DNA metabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
biological_process GO:0006281 DNA repair
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:1990426 mitotic recombination-dependent replication fork processing
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008094 DNA-dependent ATPase activity
molecular_function GO:0003690 double-stranded DNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0000150 recombinase activity
molecular_function GO:0003697 single-stranded DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 117..304
e-value: 3.5E-7
score: 39.9
IPR016467DNA recombination and repair protein, RecA-likePIRSFPIRSF005856Rad51coord: 8..337
e-value: 3.5E-140
score: 464.5
NoneNo IPR availablePFAMPF14520HHH_5coord: 30..75
e-value: 3.6E-7
score: 30.6
NoneNo IPR availableGENE3D1.10.150.20coord: 32..95
e-value: 8.7E-26
score: 89.5
NoneNo IPR availableGENE3D3.40.50.300coord: 98..333
e-value: 9.1E-41
score: 139.6
IPR011941DNA recombination/repair protein Rad51TIGRFAMTIGR02239TIGR02239coord: 23..337
e-value: 3.4E-183
score: 605.8
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 82..334
e-value: 3.8E-130
score: 432.6
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 96..267
score: 50.017
IPR020587DNA recombination and repair protein RecA, monomer-monomer interfacePROSITEPS50163RECA_3coord: 274..337
score: 20.529
IPR033925Rad51/DMC1/RadACDDcd01123Rad51_DMC1_radAcoord: 100..333
e-value: 1.08773E-146
score: 415.444
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 99..333
IPR010995DNA repair Rad51/transcription factor NusA, alpha-helicalSUPERFAMILY47794Rad51 N-terminal domain-likecoord: 19..82

Blast
[Close]
BLAST of TCONS_00065403-protein vs. Swiss-Prot (Human)
Match: RAD51 (DNA repair protein RAD51 homolog 1 OS=Homo sapiens GN=RAD51 PE=1 SV=1)

HSP 1 Score: 563.533 bits (1451), Expect = 0.000e+0
Identity = 267/323 (82.66%), Postives = 297/323 (91.95%), Query Frame = 0 
Query:   15 EDDGGPILINKLEQHGISASDIKKLSEAGYYTIESLAYTPKKTLLAIKGISEAKADKILNEVLKLVPMGFTTATEFHQKRSEIIQVTTGSKELDKLLQGGIETGSITEIFGEFRTGKTQICHQLCVTCQLPVDCGGAEGKAMYVDTEGTFRPERLLAVAEKYKLNGQEVLDNVAYARAYNSDHQTQLLIHASAMMSESRYALLIVDSATALYRTDYAGRGELSARQMHMARFLRTLLGLADQYGVAVVITNQVVAQVDGASMFQADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIYPDGIGDSKD 337
            E+  GP  I++LEQ GI+A+D+KKL EAG++T+E++AY PKK L+ IKGISEAKADKIL E  KLVPMGFTTATEFHQ+RSEIIQ+TTGSKELDKLLQGGIETGSITE+FGEFRTGKTQICH L VTCQLP+D GG EGKAMY+DTEGTFRPERLLAVAE+Y L+G +VLDNVAYARA+N+DHQTQLL  ASAMM ESRYALLIVDSATALYRTDY+GRGELSARQMH+ARFLR LL LAD++GVAVVITNQVVAQVDGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAI  DG+GD+KD
Sbjct:   17 EESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 339
The following BLAST results are available for this feature:
BLAST of TCONS_00065403-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAD510.000e+082.66DNA repair protein RAD51 homolog 1 OS=Homo sapiens... [more]
back to top