TCONS_00065403 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00065403
Unique Name	TCONS_00065403
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1579

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_439:139743..153088-
coding sequence from alignment at scaffold_439:139743..153088-

transcript sequence

>TCONS_00065403 ID=TCONS_00065403|Name=TCONS_00065403|organism=Clytia hemisphaerica|type=transcript|length=1579bp
gtgaagatagggcatAAGCATCGAACACAAAATGGCGGCTAAAGTTGCGA
TTAAAATATTGAGCTGTCTGAAATTCTGAAATTTGTGCCTGAGATGTGTA
TTTTTGCACACCAATTTCACCTTTCCAAACTGCCAAATGTCAAACGTAAG
GAGGATCAAACTTTGACTTAAGGTCAGTTTATACAGCTTAAAAAAACATA
ATGGCAACAGCACAAGCCCAACGTGAAGAAGTAGAGGAGATGGAGGATGA
CGGGGGTCCGATCCTCATCAACAAATTGGAACAACATGGTATCAGTGCTT
CTGATATAAAAAAGTTAAGTGAGGCTGGTTACTATACCATAGAATCTTTG
GCATATACACCAAAGAAGACATTGTTGGCCATCAAGGGGATCAGTGAAGC
TAAAGCTGACAAAATATTGAACGAAGTTTTGAAATTAGTACCCATGGGGT
TTACAACAGCCACAGAGTTTCATCAGAAACGTTCTGAGATTATTCAAGTG
ACAACTGGTTCTAAAGAACTTGATAAACTGTTACAAGGTGGTATTGAGAC
TGGCTCCATCACAGAGATATTTGGAGAATTCAGAACTGGTAAAACACAGA
TATGTCATCAGTTATGTGTTACTTGTCAACTACCTGTTGACTGTGGAGGT
GCTGAGGGAAAAGCTATGTATGTGGACACCGAAGGTACATTTCGTCCTGA
AAGACTGTTAGCCGtagctgaaaaatataaacTGAATGGGCAGGAAGTTT
TAGACAATGTTGCTTATGCCAGAGCTTATAACTCAGATCACCAGACACAG
CTCTTAATCCATGCCTCAGCTATGATGTCAGAATCGAGATATGCGTTACT
GATCGTGGATAGTGCAACTGCTTTATACAGAACTGACTATGCAGGCCGAG
GTGAACTATCAGCCCGGCAAATGCATATGGCTAGATTTTTGCGTACACTC
TTGGGTCTAGCTGATCAGTATGGTGTTGCTGTTGTTATCACCAACCAGGT
TGTGGCCCAAGTTGATGGCGCATCAATGTTCCAAGCTGATCCTAAGAAAC
CAATCGGTGGAAACATCATGGCACATGCCTCAACAACTAGACTTTATTTA
CGTAAAGGACGTGGTGAAACAAGAATCTGTAAGATCTATGATTCACCCTG
TCTACCTGAAGCAGAGGCCATGTTTGCCATTTATCCTGATGGGATTGGGG
ATAGTAAAgactaattttcatttttcttgtaCTGTTTTTCGNGGGATTGG
GGATAGTAAAGACTAATTTTCATCTTTCTTGTGCAGTTTTTCTTTACTCA
GGGGTCTTTCTGAGAATAATTTCAGTAGtattcattttaattttggctTT
TGCCTTTCGCcctcttttgaaattttaagattttcgtTTTTATATCCTCT
GGGAGGAAATGCTGtacaattttaatgaaaatagcCTGCATCCTTCAATT
GATCtcgttaaatataatttttgattactgttctttcttttgtaaatatt
gatattttatgGTGACATAAACCCACGCAATATATTGGTTAATGggatgt
ttttttgaaatatattcttttacaTACCT

Run BLAST on NCBI

protein sequence of TCONS_00065403-protein

>TCONS_00065403-protein ID=TCONS_00065403-protein|Name=TCONS_00065403-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MATAQAQREEVEEMEDDGGPILINKLEQHGISASDIKKLSEAGYYTIESL
AYTPKKTLLAIKGISEAKADKILNEVLKLVPMGFTTATEFHQKRSEIIQV
TTGSKELDKLLQGGIETGSITEIFGEFRTGKTQICHQLCVTCQLPVDCGG
AEGKAMYVDTEGTFRPERLLAVAEKYKLNGQEVLDNVAYARAYNSDHQTQ
LLIHASAMMSESRYALLIVDSATALYRTDYAGRGELSARQMHMARFLRTL
LGLADQYGVAVVITNQVVAQVDGASMFQADPKKPIGGNIMAHASTTRLYL
RKGRGETRICKIYDSPCLPEAEAMFAIYPDGIGDSKD

Run BLAST on NCBI

transcript from alignment at scaffold_439:139743..153088-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00065403 ID=TCONS_00065403|Name=TCONS_00065403|organism=Clytia hemisphaerica|type=transcript|length=13346bp|location=Sequence derived from alignment at scaffold_439:139743..153088- (Clytia hemisphaerica)
GTGAAGATAGGGCATAAGCATCGAACACAAAATGGCGGCTAAAGTTGCGA
TTAAAATATTGAGCTGTCTGAAATTCTGAAATTTGTGCCTGAGATGTGTA
TTTTTGCACACCAATTTCACCTTTCCAAACTGCCAAATGTCAAACGTAAG
GAGGATCAAACTTTGACTTAAGGTCAGGTAAGTATAATTTATTCAATATC
CAATAATCTATTCAATTAAGGAACGCTTTAGTGTGTAGTGAGAGGCAATT
TGATTTTTGACGCAGGCCATTTTTCATGGCATCATGCCCTTTAAGCGACG
GGTTATCAGACACTGCCCCTCTTGAAATTACTAAAATATTGGTAAAAACA
GCCTTTTTAGTGGAAAAACACTGGCAGTCAGGCACAACCTGGCAAATGAA
CGGGGTAAGCATTTGCATGGGGTATTCGTCATCCAGTCATATTTCAAACT
GAAAAAGGGAAAAAAGGAAGAAAACTGGGAACTTTATTTTTTCATTAAAA
GTTTCTTCAATCTTCGAAGACAAAATTGACCCATGGAAAAAAAATTTCAT
CTATGCAGTTCTTTGTTTTGAAATGAAGCAAAATATTTCCAACCCGGTTC
AATTAAACTGGGTATTCGGCGNCAAAATTGACCCATGGAAAAAAAAATTC
ATCTATGCAGTTCTTTGAAATGAAGCAAAATATTTTCAACCCGGTTCAAT
TAAACTGGGTATTCGGCGCTATTACGTCACTTTCGTTTTCGACCCAGTTC
ATTTGCCAATGGTCGCAAGTGAAAAATACCCCGTTCATTTGCCAGGATGT
GCCTGACTGACTGGAAAAAGTGCCCTTTTTGGCCACCAACGGACGCCGCC
TTGTCTTTCTAAAATGTTCTAAAATATGGCCTGTTGAGTGTTCTTTTTAT
AAAGAATGACCAAAGAGGGTCACGCCACAGAATTAATTACATGATCAAGA
TAATGAAAAGTTTGGAATTGAATGGCTAATAGACCTTTTTTTAAAGAGGC
AGCCATGTTGAATAATTATGTACTCCAGCATAAAAACAATGGATACAGCG
CCATCCCATGCATAATTTACTGTATCATGCATATTTTAAAAATTATGCAT
GGCTGTATCATTGTTTTTATGCTGGAGTATATACATAATTATTCAACATG
GCTGCCTCTTTAAAAAAAGGTCTATCATCATGCAAACAGCTTTTGGAGGG
GCCGTCAACTTTCGATTTTTGAATTTTTTAGCGGCATTTGGCCTAATGGA
CCTTTTTTCAAAGAGGCCACCCTGTTGAATAATTATGTAGTCCAGCAGAA
AAACAATGATACACCCATGCATAATTATTACAATATGCATGAAACAGTAA
TTATGCATTGCTGTATCATTGTTTGTATGGTTGGACTACATAATTATTCA
ACAGGGTTGCCTCTTTGAAAAAAGGTCTATGCCGTTAAGAAAATTCAAAA
GTAAATTGCATTTCATTTGCTTCTAAATTCCACGATTCTGCACACAAACC
AGAGCAAGATCAACTGTCTTCGACTTCGTCCCTTCGCTAAAGAATATATA
ACATATTCCATGTATATACCGTCAACTGCTCCAACTTGGGACTATCTTAC
GCAACATGGGACGGCCATTCCACCACCATTTCACCGAACCTCCAAAGTCA
TTTGATTTGAGTTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTCTGAAAATTTAAAATAAGTGAGTATGCCCC
TGTTTCATTGGAGCAGGTAACTGAAGTAGATGGCCGAGAATATTTTGACA
TGACTTGATTTTATTACAAACCTATTACAAATGACCCTTTCGAGCCAGAA
TATTGACAGGGTCATTTAATTAATATGACCTTTTTAAACTTCATTATAGT
AAGAATTATCAATGTGCTGAATAAGATGCTTTGAATTTTACTAAATTTTT
AGTAGAAAATGCTAAAAGAGAGATTTTTGAAGGTGCCAATTGAACTTTTG
TCTATTATTGATAAAGTGACATTATTTGACAAAAATATTATTATAGTTAT
TGAATATAAATCCCTACGAACCAATCTCAAGAAGTATTATGACACTACTC
GATATGATGCAGATAATACAAAAGGATACAGTTAATGACCTATATTTAAT
CTCGAAGAGCGTTTAAATAACGTTTTAGCCAATTGGATCTTTATAAAGGA
GACAGGGGTGTATAATAATAACTGATTAGAATATTTACATATGTTTTCTT
ATAGTCTAGCAAGCTAGACGACTAATTCATACATAGTAGAAATAAAGCAA
AAGGTAATAAAGGGAACAATTTTAGTCGTCTAGAAACCTTTGTGCACTAA
CTCCAAACAAAAGAAAAGTGTCAATATTTGCAATTATAATTTTTTCCCGC
TCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAGTTCTGGTCTGTAAAGTAT
CCAAACGGATTAGGTAGTCAGTATTAAGTATTAAGTAGTAAGTATTAAGT
AGTAGGTATTAGGCGTTTTAGACCTGCACATTATAGAATCGATTGAACCA
ATCAAACGCAATTGAAATTTGATTGTTGAATGCAATCAAATCTCAATTGA
ATATTACCTCTATTTTCAGGATTAGATTTTGTTTTGATTGAGATTAGATT
GCGTTTGATTGTGTTTTCAATTACTCGAATGTGCCATATTATGTGGGGGG
GGGGGCGTACGTAAAAAACGATAAAAAGTGTTCGGGAAACGGTGTGTGCA
AGAGTCACAGTGACAGTAAAACACCTGATTTTTCTTCCGGGATGAGGTAA
TTCTTATAAAAAACAACTGTATTTCGGTAAAAGTCACAGGAGTCAGCAAA
AAGTTAAAAGAATCTTACACCATTTCATAAAAAACCTTATTTGAAACGTT
AATACAAATGTGCACGGGGCTTTATAAAGCCCAGTTTCTATGAAAAGTGG
AAACTTTTTGTTTTGTTTATTTCAATTATCAAGGGGCGTGGAGAAACCGG
ACTGTTGACTCAAATGTTTTTTTTCGAATTCTATCAGCTCGTCTTATGTT
GTTATGTTTCGCTTTAGTGTGTTGGTTTGTGCAAAACGTAAAGAAATGTC
TGTTTCCTATGTCATCAATTGCAGAGCTATTTTTTATACTTTTAAAAACT
CTGGAAGAAATTACTGGGACACCCGGTACATTTTTTTCTTTAGAAAGGTA
TTTTATCTCTCTAAATTTTTGCAATCGAAACAAAATACAAAAATAGTGAT
CTACCTCATACACATCCTATTCCATTTTGCTGAATTTTTGACTTCTAGTC
CTTATAATTTTATGGGAAAAACAGCGGGACCGGTATTTTCGATTTAATTT
TGGACAGGATACGGTAATTTTCAAAAAATGGCCGGGATGGCGGAAATTCA
AAACCTCGTACGACCCCCACTATTATTCAAGAATTTGTCTGTACAGTAAC
AGGGGCGGACGACACAGAATTTCTGAGGGAAAAACATTTTCACCAAAATT
CAGGTAGGAACATTTGGCGAGTTCCTGTACGCGGCCGCAATAAAAAAATC
ATAACCCCTCTCACAAAAAATTTACGTTTGCGTCTTTTTTTATCGTTTTT
TGCTTAAACAATATAGCAAACATAGTAAGTATAAGTAGACTGTGCCTTTA
ATTGGCTGTAAAAACTTTTTGTGTCGGTTGAAATTTCTCCAACTTTCAAC
AATGATAGAAGATCACCTAGAAGATCATTTGCTTTGGTCTCCGGCTTAGG
GAAGTAGTAATGTTTTTGATTGTTTTCGATGGAAAATAGTAAGAAACTTA
AGTTTACAAGTGTCATTTAGTTTTTGTTGGCTGATAGAATGGCAGGATCC
TCCTGGATGGCTTCCCTAACTGAAATTAAAGATTTCCAAGATTTCCAAAA
TTTATGAATTTCCAAGGCAATTGAATTAAAATCGGCAAGGAATTTCTGAC
GCATTTCTTGCAAGTACATGGATTTTCAGTGGAATTTCCGACCACCAATG
GAAAAAATTATTTCCAAGGCTAGAAATAATTTAAAATTGTACGTCGTCTG
ACAGGCAGTCTAGACTTATACTCCTATATCAGGATTAGAAACTAGACTAG
TCTTACAGCTTTTATTTTTCCATTTGCAACAATACAATGCTGACAAACTG
ACACAACACATTGACAAGTAATCCCTGTGAGAAGTTTATATTGAAATTTG
CAACAAAACTAAAGTGGTCGCTTCTACTGATTGCTTCGTGGTGCTCCTTT
GCACAGACTGTTTATTTGATTTCCACCAATGAGATTCCACATTTCACACA
CATCCCTTCTTTTTGGCACCCGTGGCCTATCAGTGCCTTGCCTGACAGGC
AGCTGTAAAATCTCACCCTTCAAATCACCTCTTTTATTTGTTTCAAACCG
TGATCCCAAGATGTAGACTATATTTCATCTTCAATTTTTTGAAGAAAGCT
GGAAATTTGATGCAAGAGTTAGATTGTCAAAAAATTGCCATAAAAAGTCA
TTGAATAAAAGAAGAACTTAAAATCTTAAATATTTTCATTTTGAAGAATT
GGTGCAAAAAATTGAAACATTTCATTTTTTATGGTTTTGATTGAAATGGG
GGATTTGGAAAATTTTCTATGCTTGGTTTTTTACACAAACACCTTTTAAG
TAACTATGGGCGAGTACCTCGTTGCTAAGATGTTGACTTGAAATCAAAAA
TGAAACCACTGAAAACAAAAGTAAAATCAGCCTGCATTGCAAATCCTGTA
ATCTTGATATAGGAGTTTTCGTCTACACTAGCAGGGGTAACGAAAATTTT
CTCAAATGGCCCATTATGTTTGATCACTTGAATATGTTCGATTGTTACCA
TAGGGTAGTCAGTATAGCCCTAACTCTTCAAATAAAATTTATGGGAAACA
CATATTTGGACTTTGTACCCAATGCTGCATGCAAGCACTTAAGCTTTAAA
GTCCCGCAAAAGCCTGACAAAAATCAGTTTTTTGAAGTTGAAACACACAT
AGAAGATCTTTCAAATTCAGTATGTGGATGGAGCAGTAGAAAATACAACT
TTTCTTTTTTTCTTTTTTTGCATAAGGCAATTACTTTTTTTATTTTCTGG
TTTACTGAATCGCCAACGTTTTTTTGCAAAAATAAAATAAAAATAAAATT
GGATTTTACAGTATTTTATTTATTTATGCTCTTCCGACCTTGTACTGAAC
AGCCATAAAAAGGAAACTTTATAGAAAATTACATTTTATAAAAGCAAGAA
GGGCAAGTAAAAGGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCGGTACTAAGTTGTGGGGGCCAGTGCCGGGTGGTG
GTCTGATAAGGTAAGTAAAAAACAACTTAGTACATGGTACTAAGTGGTGG
TCCTAATTGAAAAAAGCATTTTTGCAACTTTGTATCAAGGGACTAAATGG
TGGTCTCGATACCAAATAATGAGGCATCAAGTTAGTATCTGGTACTCAAA
ATCCTGAAAAATCACAAAAAAATTCTTATTATAGGCAGTCTATATTAATT
TCTTACCATTTTATGGGATGTTTATTACATTTATTGTATATTAAACTTGT
CTTTTTGTTTTCCCCTGGGTGTTATCATAGTAGGCCTGATTGGTGTAATT
ATCGTGCAAATTTGGAACAAAGCGCCAAATTTGGACCAGACATGACATAT
ATGACCAGACATATAAGAAGGGCGGCCCAGAAAATTTTTAAGGGTAGCCC
TTATTTCTGGACCCATTTTTTGAAAGCTAGGGTAAAGCCCAAGAGCTCAT
TTTTTATGGAAATTTTAAACTCATTTTAGGCCAAAACCAATTATAGAATC
TGAAAGCTCTTTTTAAAAATAATATAAAAGACTTTTAAGCGAGTATGGCC
AATTTCTGTATTGAACGGGAGCTATTTGATGAAGAAGTGGTGGTTTCCTC
CTCATTTTGGTCATAAATCGCTTATAAAATGACACTTCTACATCAAATAA
CTCCCATTCAGTACAGAAACCAGCCATACTTGCTTAAAAGTCTTCTATAT
TATTTTTCAAGAGCTTTCTGATTCTATAATTGGTTTTGGCCTAAAATGAG
TTTGAAATTTCCATAAAAAATGAAGTTAAAAAAGGAAAGTTTTTTAGAAA
ATTTAAAGGGGGTGCGTACCAGAAAGTATCATTACTAAGAATTAAAGGGT
GGTATACCTATTTTGAGTAGGGAAATCAACTAAGTACAGGGTACTTAACA
GTGGTGTGTCATTTTTCAATGGTGATACCAAGATTGTACCGGGTACTAAG
GGGTGGTATACCTATTTTAAGGGGTAAATTCAACTTAGTACCATGGTACT
AAGTGGTGGTGGTCTCAGATAAATTTCAAAAAACAAAAAAGTACAACTTT
TCGGCACTGGTCCAGTACCACAACTTGGTACCCCCCCTGAATAAATGATA
AAAAATTAAAATATTGAACAAAGTTTGCAAGAACATTAGATTCAAATCAT
TTTGATTATAGTTAAATTTAGCACTTTCTGGGTAGTATGTAGTTTAAAAG
TNTGGTCCCCCCCCCCCCCTGCTTTAATGTATGTAAGTTTTCTCAAAACA
TATTTTTTCAATTTTTTACAACATTAAAGTGTTTGAAAAGAGCAATTTTA
TTTTTATTTTTTTTCCATCCTCCGGTCCAAAAGATCATCTCTAAATGTCC
GTAAACCAGAAAATAAAAAAGTAATTGCCTAAGTTCCAGAAATGAAAATG
AAGGGAAAATGATAATAATTGAATAAAATTCACTGATGATCTGCGACACT
ATGGTAAAGCTAAAGAATCATATTCTAGTTTTCATGTTATTAGATGCTGT
TTTAAAGATTTAGTGCCGAACTACACTGCTAACCTTTTCAGTTCCATGGG
AACTTTTGGATTACCACTCCCAAGACTTCAGTTTTCTTAGGGGATCCATC
CAACTCAGGCTTGCCATAAAACATTGTTGATTGGACGTTATATTTAACAA
CCCAGAATAAGCTTACACCATTGTGAGGGAGTGGCAAAAATGTGTAACCC
ATACTTTAAAAAAAACATATATTAAGCACCTAAAAGCAGATTATTCCTAA
AGAGCAAGCTGCAAACACTTTTTAATCTTCTAGGTATTGTAGAAGTGATC
TTGCGATCGCGGTGGGTGTCGTTGTTGATCCGGGTATCAGGCTATTTCCA
ATGCTATGACCAATTTTTAAAGCTTTTAGGACACAAACTAAACAATCTAT
TGGGCCTGGCTATAAATAGCCTGGCTGGAATCGATATCACAGCACATTCT
AGTAACTATTCATTCATGATACTTTATAGCACCCTGAAAATTTCATTTCA
AACAATGATCCTATCAAAATTTAGAAGGCAAAAACCCAATTTCCTTAACA
GTCAGGGCTTCCTCAGCCTCCAGAGGCTGGGTTTGTCCAGGTCTAAGATA
GTAGAGTTGCATAAACCAAGACAAATTTCGTTAATGTCATAGAAGCTATA
CGTCTTTGGGGGATGTCATCAGGGCGCAGTCCTTTCTAATTTCAAGCTCT
TTTCTGGATTTTTCATACTCCTCTATTGTGAATTCCTTGTCGTTGATTTC
AACATCATCATGTCAATTTGTTTGTCCTGATCTTCAACATCACCAGGCTG
TTTACCTTGAATGTTCTGGAAAAGATTGAACCACGTACGTACTCGTGCTT
TTGGACTGGAACCAGCAACCTGCCCTTTCTTTGACTTTTTCTGTTACCGG
ATATTTTGTGTATCATCTTCCAGGCCTCCCCATATATTGATGAGTATCAT
GAAGATTTTCTAGCTGAACTTTTTTTTCTTCCTCTGTTTTTGAATTTTCT
CTGGTGCTTTTTATAAAATGTTCCTCCTGCTAGAACCAAATTTTTGGTAG
TTTGACATATTTCCGAAAAAGACATACACTTTTCACATTGAAACAGATTA
ACATTTAATAATCAATACCTGCTGTAATCTGTCATGTTTTTGTTTCCTGA
ATTAACAAAAAATCTTTCTATTACTTGGTTTGGAAAACTACACCCCTGTT
TCACATCTCAGGTGGAACTTTTATTTCCAGTGGGGCTTGGGTCCCAGCAG
GTCTTTGACACAGGGTTCTGAAATATGGACAAAATCAATAATGGGAGTGC
TTTGTAAGTATATTATAACAAATTTTAATTAAATAAACTATTAGTTTATA
CAGCTTAAAAAAACATAATGGCAACAGCACAAGCCCAACGTGAAGAAGTA
GAGGAGATGGAGGATGACGGGGGTCCGATCCTCATCAACAAATTGGAACA
ACATGGTATCAGTGCTTCTGATATAAAAAAGTTAAGTGAGGCTGGTTACT
ATACCATAGAATCTTTGGCATATACACCAAAGAAGACATTGTTGGCCATC
AAGGGGATCAGTGAAGCTAAAGCTGACAAAATATTGAACGAAGTTTTGAA
ATTAGTACCCATGGGGTTTACAACAGCCACAGAGTTTCATCAGAAACGTT
CTGAGATTATTCAAGTGACAACTGGTTCTAAAGAACTTGATAAACTGTTA
CAAGGTGGTATTGAGACTGGCTCCATCACAGAGATATTTGGAGAATTCAG
AACTGGTAAAACACAGATATGTCATCAGTTATGTGTTACTTGTCAACTAC
CTGTTGACTGTGGAGGTGCTGAGGGAAAAGCTATGTATGTGGACACCGAA
GGTACATTTCGTCCTGAAAGACTGTTAGCCGTAGCTGAAAAATATAAACT
GAATGGGCAGGAAGTTTTAGACAATGTTGCTTATGCCAGAGCTTATAACT
CAGATCACCAGACACAGCTCTTAATCCATGCCTCAGCTATGATGTCAGAA
TCGAGATATGCGTTACTGATCGTGGATAGTGCAACTGCTTTATACAGAAC
TGACTATGCAGGCCGAGGTGAACTATCAGCCCGGCAAATGCATATGGCTA
GATTTTTGCGTACACTCTTGGGTCTAGCTGATCAGTATGGTGTTGCTGTT
GTTATCACCAACCAGGTTGTGGCCCAAGTTGATGGCGCATCAATGTTCCA
AGCTGATCCTAAGAAACCAATCGGTGGAAACATCATGGCACATGCCTCAA
CAACTAGACTTTATTTACGTAAAGGACGTGGTGAAACAAGAATCTGTAAG
ATCTATGATTCACCCTGTCTACCTGAAGCAGAGGCCATGTTTGCCATTTA
TCCTGATGGGATTGGGGATAGTAAAGACTAATTTTCATTTTTCTTGTACT
GTTTTTCGNGGGATTGGGGATAGTAAAGACTAATTTTCATCTTTCTTGTG
CAGTTTTTCTTTACTCAGGGGTCTTTCTGAGAATAATTTCAGTAGTATTC
ATTTTAATTTTGGCTTTTGCCTTTCGCCCTCTTTTGAAATTTTAAGATTT
TCGTTTTTATATCCTCTGGGAGGAAATGCTGTACAATTTTAATGAAAATA
GCCTGCATCCTTCAATTGATCTCGTTAAATATAATTTTTGATTACTGTTC
TTTCTTTTGTAAATATTGATATTTTATGGTGACATAAACCCACGCAATAT
ATTGGTTAATGGGATGTTTTTTTGAAATATATTCTTTTACATACCT

Coding sequence (CDS) from alignment at scaffold_439:139743..153088-

>TCONS_00065403 ID=TCONS_00065403|Name=TCONS_00065403|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_439:139743..153088- (Clytia hemisphaerica)
ATGGCAACAGCACAAGCCCAACGTGAAGAAGTAGAGGAGATGGAGGATGA
CGGGGGTCCGATCCTCATCAACAAATTGGAACAACATGGTATCAGTGCTT
CTGATATAAAAAAGTTAAGTGAGGCTGGTTACTATACCATAGAATCTTTG
GCATATACACCAAAGAAGACATTGTTGGCCATCAAGGGGATCAGTGAAGC
TAAAGCTGACAAAATATTGAACGAAGTTTTGAAATTAGTACCCATGGGGT
TTACAACAGCCACAGAGTTTCATCAGAAACGTTCTGAGATTATTCAAGTG
ACAACTGGTTCTAAAGAACTTGATAAACTGTTACAAGGTGGTATTGAGAC
TGGCTCCATCACAGAGATATTTGGAGAATTCAGAACTGGTAAAACACAGA
TATGTCATCAGTTATGTGTTACTTGTCAACTACCTGTTGACTGTGGAGGT
GCTGAGGGAAAAGCTATGTATGTGGACACCGAAGGTACATTTCGTCCTGA
AAGACTGTTAGCCGTAGCTGAAAAATATAAACTGAATGGGCAGGAAGTTT
TAGACAATGTTGCTTATGCCAGAGCTTATAACTCAGATCACCAGACACAG
CTCTTAATCCATGCCTCAGCTATGATGTCAGAATCGAGATATGCGTTACT
GATCGTGGATAGTGCAACTGCTTTATACAGAACTGACTATGCAGGCCGAG
GTGAACTATCAGCCCGGCAAATGCATATGGCTAGATTTTTGCGTACACTC
TTGGGTCTAGCTGATCAGTATGGTGTTGCTGTTGTTATCACCAACCAGGT
TGTGGCCCAAGTTGATGGCGCATCAATGTTCCAAGCTGATCCTAAGAAAC
CAATCGGTGGAAACATCATGGCACATGCCTCAACAACTAGACTTTATTTA
CGTAAAGGACGTGGTGAAACAAGAATCTGTAAGATCTATGATTCACCCTG
TCTACCTGAAGCAGAGGCCATGTTTGCCATTTATCCTGATGGGATTGGGG
ATAGTAAAGACTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040993	XLOC_040993	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00065403-protein	TCONS_00065403-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00065403-exon-scaffold_439-1575043694:152912..153088	TCONS_00065403-exon-scaffold_439-1575043694:152912..153088	Clytia hemisphaerica	exon
TCONS_00065403-exon-scaffold_439-1575043694:139743..141144	TCONS_00065403-exon-scaffold_439-1575043694:139743..141144	Clytia hemisphaerica	exon
TCONS_00065403-exon-scaffold_439-1510915933:152912..153088	TCONS_00065403-exon-scaffold_439-1510915933:152912..153088	Clytia hemisphaerica	exon
TCONS_00065403-exon-scaffold_439-1510915933:139743..141144	TCONS_00065403-exon-scaffold_439-1510915933:139743..141144	Clytia hemisphaerica	exon
TCONS_00065403-exon-scaffold_439-1491911889:152912..153088	TCONS_00065403-exon-scaffold_439-1491911889:152912..153088	Clytia hemisphaerica	exon
TCONS_00065403-exon-scaffold_439-1491911889:139743..141144	TCONS_00065403-exon-scaffold_439-1491911889:139743..141144	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_439	supercontig	scaffold_439:139743..153088 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
52.6648	50.4716	63.9527	70.8263	17.3172	13.6798	16.565	18.2704	14.6456	13.4995	13.7249	7.57498	10.5509	8.62607	10.1718	10.0611	18.9486	16.0235	3.78939	5.12229	11.8234	11.224	43.3368	39.1051	21.4333	20.0199	7.30971	6.63179	21.975	25.5749

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR003593	AAA+_ATPase
IPR016467	DNA_recomb/repair_RecA-like
IPR011941	DNA_recomb/repair_Rad51
IPR013632	DNA_recomb/repair_Rad51_C
IPR020588	RecA_ATP-bd
IPR020587	RecA_monomer-monomer_interface
IPR033925	Rad51_DMC1_RadA
IPR027417	P-loop_NTPase
IPR010995	DNA_repair_Rad51/TF_NusA_a-hlx

Vocabulary: **Molecular Function**
Term	Definition
GO:0008094	DNA-dependent ATPase activity
GO:0003690	double-stranded DNA binding
GO:0000150	recombinase activity
GO:0003697	single-stranded DNA binding
GO:0005524	ATP binding
GO:0003677	DNA binding
GO:0000166	nucleotide binding

Vocabulary: **Biological Process**
Term	Definition
GO:0000724	double-strand break repair via homologous recombination
GO:1990426	mitotic recombination-dependent replication fork processing
GO:0006281	DNA repair
GO:0006259	DNA metabolic process

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0006281	DNA repair
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:1990426	mitotic recombination-dependent replication fork processing
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008094	DNA-dependent ATPase activity
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0000150	recombinase activity
molecular_function	GO:0003697	single-stranded DNA binding

Blast

[Close]

BLAST of TCONS_00065403 vs. Swiss-Prot (Human)
Match: RAD51 (DNA repair protein RAD51 homolog 1 OS=Homo sapiens GN=RAD51 PE=1 SV=1)

HSP 1 Score: 562.762 bits (1449), Expect = 0.000e+0
Identity = 267/323 (82.66%), Postives = 297/323 (91.95%), Query Frame = 3

Query:  243 EDDGGPILINKLEQHGISASDIKKLSEAGYYTIESLAYTPKKTLLAIKGISEAKADKILNEVLKLVPMGFTTATEFHQKRSEIIQVTTGSKELDKLLQGGIETGSITEIFGEFRTGKTQICHQLCVTCQLPVDCGGAEGKAMYVDTEGTFRPERLLAVAEKYKLNGQEVLDNVAYARAYNSDHQTQLLIHASAMMSESRYALLIVDSATALYRTDYAGRGELSARQMHMARFLRTLLGLADQYGVAVVITNQVVAQVDGASMFQADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIYPDGIGDSKD 1211
            E+  GP  I++LEQ GI+A+D+KKL EAG++T+E++AY PKK L+ IKGISEAKADKIL E  KLVPMGFTTATEFHQ+RSEIIQ+TTGSKELDKLLQGGIETGSITE+FGEFRTGKTQICH L VTCQLP+D GG EGKAMY+DTEGTFRPERLLAVAE+Y L+G +VLDNVAYARA+N+DHQTQLL  ASAMM ESRYALLIVDSATALYRTDY+GRGELSARQMH+ARFLR LL LAD++GVAVVITNQVVAQVDGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAI  DG+GD+KD
Sbjct:   17 EESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 339

The following BLAST results are available for this feature:

BLAST of TCONS_00065403 vs. Swiss-Prot (Human)

BLAST of TCONS_00065403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RAD51	0.000e+0	82.66	DNA repair protein RAD51 homolog 1 OS=Homo sapiens...	[more]

You are here

TCONS_00065403 (transcript) - C. hemisphaerica