TCONS_00065425-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065425-protein
Unique NameTCONS_00065425-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065425-protein ID=TCONS_00065425-protein|Name=TCONS_00065425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
MKGEEYFSQDLLDAPKSPTRSVCTTPDDDFEESIKKREELKLKEQEKRLQ
IEREILEGQEDTAKLVANAEQQRHKFHVDLEKSNLQAQTELAEQFNHENQ
QRNKLLEELYLGEESHFNETVNLLVSMAERRKHTDQILEELEQEQERIDA
LVRITSEETERLRKQEMIEAMAYVLKEMELNKAKWEEYENRKKETMVKSI
CRDVQDQEDLEKVLKEKDEDQSRLLQTVITEEEKQRAAFEMLQFQKDSRL
NRIKKEVKIIETELARLSLLERQKREEKHDDEVNTLAEMRLQTAILLSQL
IDEQEKREQRLKSTIHKMEEERDDQTKDFWLIQFQRLVDNKPQLLIDDEN
KLDMYVVEILLHAGAREYLPHFARHHVTEMEMNQMTRDRLKEIGVHNEEM
ISNILSNIDSTKSIKTKFVEKETEIFSPQKEVVEDPLANATPSHVPKMIA
PPALDVCSESECVICLEEQPSVVFLTCGHVCCCATCCQPLDICPLCRQPI
TQKCRLYRSM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041002XLOC_041002Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065425TCONS_00065425Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR001841Znf_RING
IPR013761SAM/pointed
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 124..158
NoneNo IPR availableCOILSCoilCoilcoord: 250..280
NoneNo IPR availableCOILSCoilCoilcoord: 301..328
NoneNo IPR availableCOILSCoilCoilcoord: 35..62
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 459..502
e-value: 5.3E-11
score: 42.1
NoneNo IPR availableGENE3D1.10.1170.10coord: 30..509
e-value: 1.1E-11
score: 44.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 452..503
IPR001660Sterile alpha motif domainPFAMPF07647SAM_2coord: 364..410
e-value: 2.2E-4
score: 21.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 462..497
score: 10.63
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 461..500
e-value: 5.61329E-7
score: 45.8996
IPR013761Sterile alpha motif/pointed domainSUPERFAMILY47769SAM/Pointed domaincoord: 356..415

Blast
[Close]
BLAST of TCONS_00065425-protein vs. Swiss-Prot (Human)
Match: LRSM1 (E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens GN=LRSAM1 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.020e-52
Identity = 167/528 (31.63%), Postives = 283/528 (53.60%), Query Frame = 0 
Query:    3 GEEYF--SQDLL------------DAPKSPTRSVC------TTPDDDFEESIKKREELKLKEQEKRLQIEREILEGQEDTAKLVANAEQQRHKFHVDLEKSNLQAQTELAEQFNHENQQRNKLLEELYLGEESHFNETVNLLVSMAERRKHTDQILEELEQEQERIDALVRITSEETERLRKQEMIEAMAYVLKEMELNKAKWEEYENRKKETMVKSICRDVQDQ-EDLEKVLKEKDEDQSRLLQTVITEEEKQRAAFEMLQFQKDSRLNRIKKEVKIIETELARLSLLERQKREEKHDDEVNTLAEMRLQTAILLSQLIDEQEKREQRLKSTIHKMEEERDDQTKDFWLIQFQRLVDNKPQLLIDDENKLDMYVVEILLHAGAREYLPHFARHHVTEMEMNQMTRDRLKEIGVHNEEMISNILSNIDSTKSIKTKFVEKETEIFSPQKEVVEDPLANATPSHVPKMIAPPALDVCSESECVICLEEQPSVVFLTCGHVCCCATCCQPLDICPLCRQPITQKCRLYRS 509
            G EY+  SQ LL            D+P  PT               D+E    KR+E K+ E   +L+ ER +  GQ +  +L+  +  Q+ +    +++   + +  L+E   H N +R +L E+L   E+ + +  +  L+   +R+K + +IL+ LE E+ R++ L+ IT EETE LR++++  AM  +L E   N+     YE+ +++ +V+  C  + +  E  +++L  +  DQ++ +  ++ E   Q+AAFE LQ +KD    +I+ ++K+IETEL +L+ LE +++    +     ++E R   + LL QL+ E+++RE+ L+  + ++E + + + +++WLIQ+QRL++ KP  L   E  ++  +V +L    A  YLP FA H ++   ++QM+   L ++GV    +   IL  +             + E+  P  EVV  P A   P    +  APPA      SECV+CLE +  ++FL CGHVCCC  CCQPL  CPLCRQ I Q+ R+Y S
Sbjct:  209 GLEYYPPSQYLLPILEQDGIENSRDSPDGPTDRFSREELEWQNRFSDYE----KRKEQKMLE---KLEFERRLELGQREHTQLLQQSSSQKDEILQTVKEEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQ-NISSRIQKLLQDNQRQKKSSEILKSLENERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYES-QRQNLVQQACSSMAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIETELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKSETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLLSQMSPGDLAKVGVSEAGLQHEILRRVQEL----LDAARIQPELKPPMGEVV-TPTAPQEPPESVRPSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIYHS 722
The following BLAST results are available for this feature:
BLAST of TCONS_00065425-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRSM16.020e-5231.63E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens... [more]
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