TCONS_00065425 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065425
Unique NameTCONS_00065425
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3016

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065425 ID=TCONS_00065425|Name=TCONS_00065425|organism=Clytia hemisphaerica|type=transcript|length=3016bp
tAAGATtaataaacaaaaacattaagAATAGATATAAGGGTGCACGAAGG
AATATATTCAAAATGTAAAATCCTGAATAAGCAGGCACTGTTATTACAAC
ACAACTTACTAGAAGATTTAAAAGGTGGAGGAAACCTTGAAGacctttca
aaacttttgGTGCTCGACTTGTCTCACAATCGTTTGAAAGTTTTACCAAA
AGAAATAAAATGTTTGGTGAACTTACAGAGATTTGATATATCACATaaca
aaatcaagaaacttCCAGATGAGATAGGATCACTGAAAGCGTTGGAAAAA
TTCGACTGCTCAAATAATGATTTGTCTGGCCTTCCTGGAACGATCAAATA
CTTCAAGAATCTAACTACCTTAAACATCACAGAGAATAGATTTATTACTA
GTCTCCCGGTCAACTTATGTTTCTGTAAAAAATTAAAGGAATTCATTTTC
GATGTTGACAGAATCACATACCCAAGCAAACaatttacAAGTCAAGGGAT
TGAAGAAATTCAGCGCTTTTTCAAAAAGATGAAAGGCGAAGAGTATTTCT
CTCAAGATCTCCTTGATGCTCCCAAATCCCCAACACGATCCGTATGCACA
ACTCCTGATGATGATTTTGAAGAAAGTATCAAGAAACGGGAAGAACTGAA
ATTAAAAGAACAAGAAAAGCGCTTACAGATTGAGCGTGAGATTTTGGAGG
GTCAAGAAGATACAGCCAAACTGGTTGCTAATGCAGAACAACAAAGACAT
AAATTCCATGTGGATCTAGAAAAGAGCAACCTCCAAGCACAGACGGAGCT
AGCTGAACAATTTAATCACGAAAACCAACAACGAAATAAACTCCTGGAGG
AACTTTATTTAGGAGAGGAAAGTCATTTCAATGAAACTGTCAACCTACTT
GTTAGCATGGCCGAAAGGCGGAAACATACAGATCAGATACTGGAAGAGCT
GGAACAAGAACAAGAACGTATAGATGCTTTGGTGAGGATCACGAGCGAAG
AAACAGAAAGATTACGTAAACAAGAAATGATCGAGGCAATGGCTTATGTT
TTGAAAGAAATGGAACTCAACAAAGCGAAATGGGAAGAATATGAAAATCG
AAAGAAAGAAACAATGGTCAAATCAATCTGCAGGGACGTTCAAGATCAAG
AAGATCTTGAAAAAGTGttgaaagaaaaagatgaaGATCAATCACGTCTC
CTGCAAACTGTCATTACGGAGGAAGAGAAACAACGTGCAGCCTTCGAGAT
GCTTCAATTTCAAAAGGATTCAAGGCTGAATCGAATCAAGAAAGAGGTGA
AGATAATCGAGACAGAGTTAGCGAGATTATCATTGTTGGAACGACAGAAA
CGTGAAGAAAAACACGACGATGAAGTTAACACGCTTGCAGAGATGAGATT
GCAGACTGCCATCTTGTTATCACAGTTGATAGATGAACAAGAGAAACGAG
AACAAAGATTGAAATCCACTATCCACAAAATGGAAGAGGAGAGAGATGAC
CAAACTAAAGATTTCTGGTTGATTCAATTCCAACGTCTCGTGGATAACAA
ACCACAACTCTTGATCGATGACGAAAACAAACTGGATATGTATGTTGTGG
AAATACTCTTACATGCCGGTGCACGTGAATATCTTCCACATTTTGCAAGA
CATCACGTGACTGAAATGGAAATGAACCAAATGACACGTGACCGATTGAA
AGAGATCGGTGTACATAATGAAGAAATGATAAGCAACATTTTATCAAACA
TTGATTCCACAAAGAGCATCAAAACGAAATTTGTCGAAAAAGAAACAGAA
ATATTTTCACCACAGAAGGAGGTGGTAGAGGATCCATTAGCAAATGCAAC
TCCATCACACGTGCCAAAGATGATTGCACCACCAGCTCTCGATGTGTGTT
CAGAATCCGAATGTGTCATTTGTCTAGAAGAACAGCCATCAGTTGTATTT
TTGACTTGTGGTCACGTGTGTTGTTGCGCAACATGTTGCCAACCATTGGA
TATATGTCCGTTATGCCGGCAGCCGATCACACAGAAATGTCGCTTGTACC
GAAGtatgtaaaatgaaaaaaagatgtAACCTCCTAGCTACGCTACAGAT
GTACAATACCCAAAAAGCGCACTGCATTGTGGGTAGTAAAATGAAATTAT
AGCTTCCACTGTCAAATTACCGTGATAAGATGACATGGAGAGATCTTGGA
ATTTTGTCTATTACATGATACTAACACTAACATTGCGTTTATCAAACCAA
GGTGTGATCAAATGTATTATACTTATTTGATGTATCATGTCTAAGCGTAC
GCAACAAGCATGTTAGACGTTATAATTTCATAATATCTACCCAATGAACA
ATCGGAGCAATCAGAAAATGTAATATGTAATCCCTGGTCTAACTAGTATA
TTGGTATAAGTAATAAGTAACGGTAAATAATTATTTGGAAGTAAGATGGA
TCATGATTTTACATGATGTTGGCATCACTAaatggagaaaaatgaaaaag
ttgatCGAATTTTCAGTCATGAAATAATTTTTGGCCTTCATTCAAAATGT
TTATATAGTAATTGATAATGAAATGacttatttattttaaatgatACTCT
TGGAATTATAAGTTCAGTTAATTTTTCAGCGTTCTTTCTAATTAGTGGGC
ATTGTCACGGAAATGAACAATGATGGAAAAAGGGGTAGTAGCAAATCATA
AGAATTTTCAACCTTTCGAAAGTATTTTGAGAGTGTTAGGCTTACGTCAT
ATCTTACTTCATTTCGAGCGTAAAATTCCTTCTCTTCGAGATATGTGCAC
TGCTcgtgttttgaatattgaaatccTCCGAATACACCGCATGCGACGGT
GGTCCCTCATAACCTATAGAActagagtaaggcctaaaagcctgtaCTTC
GTACCACGTTTATCGCTTTGTAGTacatagcctgggaatccatgctatga
tttcttctttgataaactgatggcgaaatgtatagcatggtacgggctga
gagtttgaatttctca
Run BLAST on NCBI

protein sequence of TCONS_00065425-protein

>TCONS_00065425-protein ID=TCONS_00065425-protein|Name=TCONS_00065425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
MKGEEYFSQDLLDAPKSPTRSVCTTPDDDFEESIKKREELKLKEQEKRLQ
IEREILEGQEDTAKLVANAEQQRHKFHVDLEKSNLQAQTELAEQFNHENQ
QRNKLLEELYLGEESHFNETVNLLVSMAERRKHTDQILEELEQEQERIDA
LVRITSEETERLRKQEMIEAMAYVLKEMELNKAKWEEYENRKKETMVKSI
CRDVQDQEDLEKVLKEKDEDQSRLLQTVITEEEKQRAAFEMLQFQKDSRL
NRIKKEVKIIETELARLSLLERQKREEKHDDEVNTLAEMRLQTAILLSQL
IDEQEKREQRLKSTIHKMEEERDDQTKDFWLIQFQRLVDNKPQLLIDDEN
KLDMYVVEILLHAGAREYLPHFARHHVTEMEMNQMTRDRLKEIGVHNEEM
ISNILSNIDSTKSIKTKFVEKETEIFSPQKEVVEDPLANATPSHVPKMIA
PPALDVCSESECVICLEEQPSVVFLTCGHVCCCATCCQPLDICPLCRQPI
TQKCRLYRSM
Run BLAST on NCBI

transcript from alignment at scaffold_439:363349..382880-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065425 ID=TCONS_00065425|Name=TCONS_00065425|organism=Clytia hemisphaerica|type=transcript|length=19532bp|location=Sequence derived from alignment at scaffold_439:363349..382880- (Clytia hemisphaerica)
TAAGATTAATAAACAAAAACATTAAGAATAGATATAAGGGTGAGCTATGA
TTGTTTAGAAGATTAAAATAACACATGCATTTTTAAGCTAAAAAGTCAGA
TTTTCTGGTTCTCACAACAGTGAGTTGTTATTCTGATATTGCGTAATACC
TCTAATACATTCTTTATTTAATTTAGGTGCACGAAGGAATATATTCAAAA
TGTAAAATCCTGAATAAGCAGGTAAGTTATTGAACAGTATTTTGTAAGAC
AGAAAAGATGTATTTTTTAAGGTTTTAGTTATGACACTGGCATTCCAAAC
AGAAATTGGATCCCCTCCACAGTTAATCTTATATTGATTTGAGATTTGGG
TTGTACATTCGTTCGCTAGCAGTCTTTAATATCGTCAAATGAATTTAGGA
CTTTTTAACTATTATTCCTTTTTTTCTTTGGTATTATTCACAGCAAACAT
GTATAGCCATGATTTACATGATAATATTCACCTTTTTTAACTTGTAAAAT
TGATGATATTTTATTTTTTCTTGCAGGCACTGTTATTACAACACAACTTA
CTAGAAGATTTAAAAGGTGGAGGAAACCTTGAAGACCTTTCAAAACTTTT
GGTATGTACCTTCATTCATAGCAGCAGATATTTTCTTCAAAAGTCCTCAA
ACATTTAAGATAATATTTGCTGTTTTGTATAGTTTATAAAACTTATCAGA
GTATACTTCAATACTATGTCTTCCATGCCTGCAGCCTCATCCTTCAGCTA
CAATAACAAATTGATTTAACATTGAGAAAGCAATTATGCTGATTTCCTAC
ACCAGAGAAATAGTGTATATGTAATTCTTTTTTTATATTACCTTTAGGTG
CTCGACTTGTCTCACAATCGTTTGAAAGTTTTACCAAAAGAAATAAAATG
TTTGGTGAACTTACAGGTATGTGCGCCAAAATGTTATTATTCAAATATTT
GTATCATTAGTATATTGCTAGTGTTCGGCCTGAAAGTATTGCTTTTCATT
AAAGGTTTTATTTTTACAAAAGTGTTCTCGTTTCATATGTACTAGTTATC
GCATGACTTCGAGTGCAATACGAGAAATATTTTACGAGTTCCGAGATTTT
TCCGTAATATTTTTCCGAGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCAACGCGGTCATATTTCCAGACTAAAGAAATATGAAATAT
CGCAAATATCTCGATGCTCTCGACCAATCAAAACGCTGATATTTTTTTGG
GTCGGCAATAACAGACACTATTATGAAGAGGGTGTCTCCCTTGTGCTGAA
TAAACAAAAAATTATATTTCCTTTTCTTATTCTGATCAATTTTGGTCCAT
TTAATGTGAAAAACGACGAGTAATCAAACGATATCACTCTTGTTTAAAAA
CAAAACCTTTAATTTGCTCTTACATTCTAGCAATATTTTCTTGATACTAA
TTAATTTTTAGAGATTTGATATATCACATAACAAAATCAAGAAACTTCCA
GATGAGATAGGATCACTGAAAGCGTTGGAAAAATTCGACTGCTCAAGTAA
GTTCTTATGAAGCCCAAAAGTTTCAATAACTAGATTATTTGTTATCATTT
TTCAAACAACTCAAAAAAAGCTTCCTTTTTACCACTGATGGTCAAAACCA
GGCGTTCGTAAATTATTACAACATTAACTCTTATTGTTTGATTTTCAACA
CTATATCCTAAACTCGAGATGAAAGCCAACTTCAAATTGATATTCAAAAG
TAAATATTACCAACTTCAATGTTTCTCGTTTCTCTCTTCCAGATAATGAT
TTGTCTGGCCTTCCTGGAACGATCAAATACTTCAAGAATCTAACTACCTT
AAACATCACAGAGAATAGATTTATTACTAGTCTCCCGGTCAACTTATGTT
TCTGTAAAAAATTAAAGGTATATCAAAATACTTATATTGAATTTTCTTCT
ATAACCCATCATAATTCACTTTAAAATATCACTGATTTGATATATTAAAT
TTTGATTAGACAATAAAGAAGTTGTCAATGGCTCCTATTACATCTTTTTT
GTCTTTCTTTAGTCTTTCTTTCATTTTTATGGATTTCTAGAAACTATTTA
ACTTAGCAGGTTCATTTTGTAAGTGTTTATTCAGTATTTTCTTCGATATT
TTGCAGGAATTCATTTTCGATGTTGACAGAATCACATACCCAAGCAAACG
TAAGAATGAGATTATTTTGATTGCAGTCTTCGTATCTTAACTCGATATTT
ATAATTACTTATATTACTTTGCACTGACTTAAATCTGTATTGAAGAATCG
AAGAAATATCAAAATTGGAACCAGTTATATTCATTTCGACCAGTTTTCCA
GACTTTGATAGCCAAATAACTGTCTTTGTTTTTAGAATTTACAAGTCAAG
GGATTGAAGAAATTCAGCGCTTTTTCAAAAAGAGTATGTAGTGATTAGCT
TAAATTTTTATCCTGACCATTGCCATAACAATGCTATCTCTTCTGAAACT
TTTCGTCTCTAACCCTTTCCGTGCCAAAATTGAATTTATGCTGTTCCACT
TTCCTTCAACTTTTATAAGCGTTTTTTCTAAAAGGTTTTATACCAAAAAC
ATTCAAACCAATGGTTTTAAAAATCAGCAAGTAGTAAATCTTCGTTTTTA
TCTTTTGAAAAAGACTTTTACCAATTTCAAGCTAAATTTCAATGCTTGAT
TTTCTTTTCTTTTCTTTTTTTAAGCACTAAAATGACTAACATATTGGTCA
AATGGCACGGAAAGGAATAAAGAGACCTAAGAACCTAAGAGTGGTAACGA
TCTTCGTATGTTAATAAACTTTGTTGTTCTTTTTCAGTGAAAGGCGAAGA
GTATTTCTCTCAAGATCTCCTTGATGCTCCCAAATGTAAGAATCGTTATA
TTTAAATGATTTCAATATCTATTACACTCTCTTAAAGTCTAAATCTTTGC
CTACAATTTAGAATTTAAATATCATATCAATCGTACTTATTGGGCTATCC
TGAACTTTGAGGATATTGATTTTCCAAGCCTTTCTTAATCACCTCCACTG
CAGCTTGAAATATGATATTTTCAACAGTACAGGTAAAATATATTCCAGTA
AAACCCATGATGCTTTTTCTAGATTTAAGTTTAACCCTACCCTTTAATAC
TAGAAATTTTGATTATAAATTCTCTTACAGCCCCAACACGATCCGTATGC
ACAACTCCTGATGATGATTTTGAAGTAAACTTTATATTTCTTTTCTATTC
TTCTTTTCCATACATATATCAGTTGACGATGATATTGAAATTGATTCTCT
ATTATTAAATCTCTGATGTTTTTAATGTGACTGTCTCTATGAGACAATAT
GTTTTCATTGATTTTGATGAGGTTTTTATTAACATTTTGAGACTGATTCA
CAAAATAATAATAGGTAGTTCGTGAAGTGACTTATAACAATAGACCTTTA
TACTCGTCATCTTCTCTTTACAGATTTCATTCAGACTTTTCTGAAACTTG
ATAAACGTGACATTTGCATGGCTTACTAAAGCCCTAAAAAACTAGAGTGG
CGTTCATATTTTTTAGTTCATACTTATTATACCTCATCAGTATAAGTTTC
TGAATTTTTTTTTGCTATAAGAAAAATATTCTTCTTTAAATGAAATCTTG
GTTGATTGATATAGATCTCAGATAGCTCAGATTATTTAAGTTTTGCCTAA
AGGTTTTTACCTTCGAAAAAAACTCTGTGATTAAGGTTATTCTCAATCTT
TTTCATTCCATTAGGAAAGTATCAAGAAACGGGAAGAACTGAAATTAAAA
GAACAAGAAAAGCGCTTACAGATTGAGCGTGAGATTTTGGAGGGTCAAGA
AGATACAGCCAAACTGGTTGCTAATGCAGAACAACAAAGACATAAATTCC
ATGTGGATCTAGAAAAGGTTTGGGGTGTAACGGGAGGTTATGTATTGAGC
CACTACTTCTATCTATATTCTTAGATCGCAATAGTGAATAAAAGCAGCCA
AGTGTACACACCTAGATAAGGCTCAATTGGATAAAAAAGACGTTTTGTGA
ATGTTCTAACATATAGGATACTATAATCGGATTAACTTTCGCGAGATTAA
ATTTCGCGATTTCGCGAGTTTTTGCCATTTCCGTGAAATTAAAACTCGTG
AAAACGCGTGAGATTCCCGACTCGCGAAACTAAACCCACCGCAAAATTTA
AGAAAATCACATTTTCGGCAGAGAAACCAGTCCAAAGTTTCCATTTGTTG
CAAAAAATGGCTATTTTTCAGCTGTTTTCAGACTTATTCGCGAAATTGAA
TCCAGGCGAAATTTTTCAAAACTCTGACTGGCGAAATTAAATCCAGGAAA
TTTCTCGATTTTTCTCGCTCGCAAAATCTAATCTCGTGAACTTAAACTAA
TCCGATTAAAGTATCTAGAAAGCACTCTTAAATTATACGAGTGTATATAT
TATAAGATACCGTATTACTTCAAATAAACGCCCCCTTCTTTTAAACGCCC
CCTCGAATAAACGCCCCTCCTAAAAGGAAAATTATTCAATAAATGCCCCC
CTCAAATAAACGCCCCCTTCGAATAAACGCCCCCTCTAGGGGAGGGGCGT
TTATTAGAAACTTATGACTTTAATACTTCAGTACCAGTATTGATTGGGTT
TGAAAAAGAAGATTTTTAGTCATTTCTTGTAACCAGAGCAGTTTTCGATG
CAATTTTAGCCGTTGAGCCAAAGAAATTTTGCACTAAAACCCTGACAAAG
AACTAATCCAAAGGGTATATTTGCTCTAAATATTCGACTTTAGACTAAAT
TAATTTAATAAACGCCCCCTTCTTTTAAACGCCCCCGTCGAATAAACGCC
CCTCCAAAAATCGAAAAATTTTAATAAGCGCCCCGGGCGTTTATTCGAAG
TAATACGGTATGAGAAATCACTCTCTTACTAATTTTGTCATTATATAGAG
CAACCTCCAAGCACAGACGGAGCTAGCTGAACAATTTAATCACGAAAACC
AACAACGAAATAAACTCCTGGAGGAACTTTATTTAGGAGGTATGGTATCT
CAACTATTCGTTTTTGTTTTTGCATTGAATAGGTTGTCTTTATAATAAGA
TATAAAATATCCCTTTCACAATTGTTTTTGTCTCTATTTCTAGAGGAAAG
TCATTTCAATGAAACTGTCAACCTACTTGTTAGCATGGCCGAAAGGTAAT
GTACATTTTAAAACGGTATCGTTAAAATCCTTGTTTGAAAAATGATCTCA
CTTGTCCAGTTGTTTATTTGAAATTACGCGAAATTCAACCAGCGGTAGAA
CACTTAGCGACAATTTTCCCTTATCACTGACATAGTTTTGATCGTAACAA
AACACGTCATATTAGAGGGAATCTTGCAGCCTAACAACGAGACGATTGAA
AAACATACACTGCTCGGCAACCTGTAACTAAAACTACACTGACTATGATT
AGTAAGGTTTGGTGAGATGGTTCGCCTTGACCTCGTTTCTGGAAGGTCTA
AATCTTTTCCCATTCCTTTTCAAGGCGGAAACATACAGATCAGATACTGG
AAGAGCTGGAACAAGAACAGTAAGATTTTCTCTTCGCTTCTTTTTGTCAA
TCACTGGTTAACTAGAATCGTTTGCGGTTTGCGTTTCATTCCAGTGGTAT
GCATAGTAAAATAGTTTAAAGGTTTTAATTTTACATCAGGGTTTCCGTCT
CATATCAGACACATGTCTCTATCAGGGCAATATCTGTCTATTGTTTATAT
GCTGATACTAGTCATAGCTTTCACTAAATGCCCCCACATAAAGATCATGT
CATGCACTTATAAAGCTTTAATGCTTTAAAGGGGATCTAACGTCAGAAAA
TTCATGTACCTCATTTTTTTACATAGGAAAGCTCTGATAGAAACAAAAAT
ATTGAAAAAAGAACGAACTTAAAATCTTTTAAATTCATTAAGTTATTGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAGGGATATTATA
ACACATTGACTGAAGATCTTTTGATGTAACATAGCTCTTTCGAAAGCTCT
CGTTATAAATTTTTTAAAACTTTCCAAAAAAGTGTGATGAAGGATTTGAC
GTTAGATCCCCTTTAAAGATTAAACATTAAAAAATAATCAGGAATAATTG
ATTGATTTATTGATTGATTGGTTGATTGATTGATTGATTGATTGATTGAT
TGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTG
ATTGATTGATTGATTAATTGAGGCGTTTGCTTGAAAAAAGAATTATATTC
CATTATAAAAAAATACATACTTGAAGAATTCATGCAGCTTGATAACTTAG
TAAAATTTAAGGAAAAGCTGGAAAAGCCTCTCAAAAATATATTTAAAAAG
TTATGGTATCATTATCTTACTGATTTTCACATCTCCTGTTCGTTTGTTTT
TTCTCCTAGTTTCTTTCTTATAACGATATATGTCATGATTATTATTCACT
AAATAGACCTTTTCTAATAATGTCGCAGACATCTTAGATTGTAGGCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCA
TTGTGGTTCATTCAGACGTACAGTCGAGAAAAGTTAAAATGCACCTAAAT
TTCTTTTCAAGTGCATAGTCCTTTTTCATGATGCAATCTTTTCTCCAAGC
CGATTGCAGCGCAGAGCAGACAATGAAGAGACGTGCCTTCAGGAAGCTAG
ACTTTTTGAGTTTATAGCTAGCGATATACTTTCCCTTTATGGTGTTTCTG
TATGACTGTCTGTGTACCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGC
CAGAATTTGGAGCTATTTCACCAAACCACTGGAGCGTAAGTTATTTAGGC
TATCACAACTGCATGAAAAAGTTTAACGTGCGCATGTAAAGGTTAACGAG
TAAACAAACTTTTTTCAGGTTTTTGAAAAAGATTTACCACACTGAAAAGA
CCTAAAAACACTCTAAGTGAGGTAAATTATTTTGAAGACCAAAAGAAAAA
GTCAACCACGTTTGGATTCAACTTTACATATGCGTACATTCATCTTTTTT
GTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TAAGTTAAGAAGGACTTTCTCGAGTTACGACCATATGATGGTATTTAAAG
CTCAAGAAGCCCTATAAACAATAAAGGTAGTTATCAATAAAATGACAGAC
AAAGTTAAATTAGAGCTTGAACAAAAATATCAAATGTACATTTGAAAACT
TAAGCAAATTTCTTTAAAGATTCTGGAAAAAGAATTGAAATCATTGCTGC
AGTGAACTTCTGACTAAATTACAGTAGTTAGTATTCAGTTTCAAAGACAA
GAAACAAAATTTGACATACAAAACACTTTTTCTAGTCAATGAATCAGCTC
ATCATCATCATAACCAGTCTGCCATTTTGTTTGTTTTGATTTGCACAAGT
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGTAA
TATGAAAATATGTATACTACCGTCCCGGAAAAAAAACCGAACATTTACGG
AAGAGACTAACTACGGATATGCTTACGCGACAACAACAACAACAACAACA
AAACAAGTCGCAAAATTTTGAGATTCCAGTCCAATATCTATGCGTGAAAC
TATGAGTGCCTCCTCGTCGCTACGCTCCTGCGGGGGCAATAAGTAAAAAT
ATGTTTTTCTTTTCCGCTTTCTGACCAATCTTGCTCCACATCCGTGTCAA
TCCAATGTGAAAAAGCTTATAAAATAAAAATTGATGAGTAAGAATAACGA
GATCACTATTATTTAAGAACAAAACATTTAAGAGGTTTTCGTTCAGTAGT
TTTGACTCCAACGCTATTGCTTCTCATTTCAGAGAACGTATAGATGCTTT
GGTGAGGATCACGAGCGAAGAAACAGAAAGATTACGTAAACAAGAAATGA
TCGGTATGTTTGTTTAGGGTTCTGATCGGGCTGTGATCGCGGCTTTTTTA
AATAATGCATAGGTGGGCTGGATTATCTTCATGTAACTTTTATAGCACTC
AATAGATATTTCATAATCATGAATTTTATTTGATACCTTGCAGAGGCAAT
GGCTTATGTTTTGAAAGAAATGGAACTCAACAAAGCGAAATGGGAAGAAT
ATGAAAATCGAAAGAAAGAAACAATGGTCAAATCAATCTGCAGGTATTTG
TAAAACAATACTAGGGATTCGATTTGGTGATCTATTGATACGAGTAATTT
TCACAACACAAAATATCTAGTAAATAAACTCATTTTGGTAAAAATTTTCC
CACGTAAGCATATAATTTTCGAAATGAGGCACATTTACACTTCCTGGCCA
AACAGGATGTATTTTCCTTTTATTTGGTGAAAGTTTAAAACGAAATCAAA
AAGTTTGTTGATTCAAATCCCCTTCGTCTTGTCTTGAAATTCAAAAAGCA
CAGTATTATAAGTCGAGTTGCACTGTACCAACAGTTTCATAACCGTATTT
GACCGTATGGACGTCCAAGCCTGTGAACCTAGTGATGATTATAAGCTTGA
GGAAGCAAGCTAAAGCTGGAATGTTTTTTATTTAGACGTATTTTGATAGA
TTATCTTGAAATAATTGTATGCTAAAGGTTTTTCTATATTACTTCACAGG
GACGTTCAAGATCAAGAAGATCTTGAAAAAGTGTTGAAAGAAAAAGATGA
AGATCAATCACGTCTCCTGCAAACTGTCATTACGGAGGTAATGAAAAGTT
TCACATTATGGAGCTAATTTAATGAATCTTTAGTTTGATGATACTTAAAA
AGTCTTATTTAAAATATGGTTTTCTGCTATTTGGATCCGACCTTGCTTAG
TTTATTGTAAAACAGATATCTGTGGACACCACTTAGTTTTGTTTTCCTGC
TTTGACTTTCTTAGGAAGAGAAACAACGTGCAGCCTTCGAGATGCTTCAA
TTTCAAAAGGATTCAAGGCTGAATCGAATCAAGAAAGAGGTACAACTGCT
AATTAACACAAATCATATAAGGAAACCATCTTCTTGCTCCAATGCAAACC
CTTAAAAAAAAGTTATGTTTACGAAATTCATTTGAGAACTGCACTGTAAT
CGGAATAAATTTTGCGATTTCGCGAAATTAAATCTACCACAAAATTTTTA
AAATCGCATTTTTGGCTGAGAAACCAGTCCGAAATCTCCAGCTGTTTTCA
GGCTTGTTTGAGAAATTAAATAAATTCAATCCGATTAATTTTAGTGGTCT
AGTAATGAAATCTAGTTTATTCAATAATTGAATTGGAACGGTTTTGGCAC
TTTTTATACGACAAACTTGCGAGCCACAGTGCTGTGAGCTGTTTGCATAG
TACTGGTTTAACCCAAGGTAAACCTAGGGTTTTATTTTTTTGGCACCTCT
TGTTATCTGTTATCTCAGAATTCTTTACTTCTTTAAATATTTCAGGTGAA
GATAATCGAGACAGAGTTAGCGAGATTATCATTGTTGGAACGACAGAAAC
GTGAAGAAAAACACGACGATGAAGTTGTAAGCTACTAATTTTTTTCTTTT
TTCATTGCACATGTTTTATAATAAACAGTAGATTTTTAGTATTTTAAGAT
AAAATTGTTGAGGTATTTAGACCATATTCAGACGTTACGGTTTCGCATCG
CTCCGGTATGGTTTTTGTTAGGGAAGTGTTCATACGTATAGGTTTCGGAA
CCTTTTGGAGCGAGAAACAGAGCAGTTCCAGCCCAATGAAAAAAGTGTAG
CGTAACTGTTTCCGTCAGTTTTTCTTTGAAGCGTCCTCTTTTTTGATCCT
TTTGATGAAGTTCTAAATTTTTATTGTCTGCACAGTGGACCGGGACTGTT
TTATTTGGAACCGTAATGTCTGAACATATTCTTAGGCTCTGCACCTTATT
TTTACTATAACTTTTTATCTGCTTAAAGCTCAGTAACCTAGGTTCAGCTT
TGTTCTTAAGTTATTCTTTTAAAATTCTTCTAGTAAAATAGAAGTATTTT
GGACTATTCAAGAAAAAGTCCTTCCCTATTCTATGGTTTATATACTACGG
TATCCAGGGAGAATCCACATTGTCAAAACACAAGGAGGTTTATCAGATTT
TAAGATTAAATATCCAGGGAGACTTTTGTCGAGAAAGAAATAAGGTCTTC
TAGATTTTCATAAAAATGACCTCTAACTAGTCATTTATCAAAATCTAAAA
GAGCATACACGATGTTGCTACTCCTCTTCCATTCGGGTGTCACTGAGGAT
TTGAAAAGATGTTTGATACCGCATTGCTTGATGTTTGATGCTGAAGATTC
AAATATGGCTGGAGAAATATAAGATAAGAAATGATAAACTGAGCAAATTT
TTCCATTTCAGAACACGCTTGCAGAGATGAGATTGCAGACTGCCATCTTG
TTATCACAGTTGATAGATGAACAAGAGAAACGAGAACAAAGATTGAAATC
CACTATCGTAAGTACAGTTAACATTCTCTAATTCGACGGGGAATCTTATT
TGTTCGTATAACAAAAAGATTCGAATTATTAGTAAAGGGAGGACCCGTGA
CCTATCTTTAATGCGACGCAGCCAAACCTGCTCCGTTTCGACGAATGAAG
TATTTAAAGAGTTTTTCGCAAGGGAGGTTTTTTGCTAAGGCCTAGGAAAA
ATTTTTAGGACTCGAAAACTGATGTCACAAGCAAAACCCCTTGACCCCTA
AAATTTGACGAAATTTCAAAGTCAATAAAACCCGATACCACTTATACCAA
AGCTCAAATCATATAAAAAAAACTATATAGAGGACTTTTAAGTGGATATT
AACGAGAAAATTAACGTAAAAATTACGAAGAGTTGACTGTACAACCTATT
GTTATAATTTTCTCAACTTTGATTGGTCTATTCCAAAGATTATAGGCACA
ATACCCATGGTAGTGTTTTAAAAGCCAGTGATTTATGAGGCTATTTGCTC
ATGTTGCAAAACCAATGCAGAATATTTATTTTCTCAATTCTTTTAATTCT
TTCAAATCGCGTTAAAAGGTTCTAAAATAATAATCTGCGCTTCATAAATG
TAGAAAAGTCTTCTATCGTTAAAATGAAAAGTCAACTGACGAAACGCGCG
CTGTTTTGTTCCAATGAATTACCTTTTCGACGTAGACTTCGCTAAATAGG
GTCAATGTACCTTCAATCCTTTTTTACGATTCTGATTGTCGTAAACCCAA
GGTCAAAAAGTGATAAGTAAGTAAGTCTGTGACCGCAGTCGGAGGTGACC
TGGAGGCTCCTCTTTCGATCGATAGCTACCTGAAGGTAGAGGAGGGCGCC
ACTCTTTCTCCCTGGGTTGCTCCACTTATCTTTGATCCCTCTCTTAATTG
CTGATAATCAAGCAGAGAGGCATCAAGTATCATTTTGTACTAAGTAAGAA
GTTTTTGGTATGACCCGGCCGAAGGTTGCACCCACGACCTTGTGCATCGT
AGCGGATGCTCTACCATTGCATTACGGTCGCTTATTTATCACAAAGAGTG
ATCAATTCAGGTTCACTGCAAAAATCTCAATGTTTAACTTTTTCACATCT
CAAATCTCCAATTTCTTCTTCATTGCCATAGCACAAAATGGAAGAGGAGA
GAGATGACCAAACTAAAGATTTCTGGTTGATTCAATTCCAACGTCTCGTG
GATAACAAACCACAACTCTTGATCGATGACGTAAGTATGACGTAATCTCG
GATACAGCCGCCTATCCATTCGTGGTATTCATTACGTAATGTTTTATACG
GAAGCACCCGAAAAAGACCAGGTTTTTGACACTAACTTTGAACTGAAACA
ATAAAATTAGTTGTAAACAACCGGGCTATTTTGGGTGCTTACGTACATAA
CATTATACGTCATGAATATCATGAATAACTCGAACCTTGTCTCTTCGTTT
CCGACTCTGTATAATTCTAACTTTCTATGACTTGAACGAGTACTGATCTA
GATTGCTGTTTGACCTATAGGGACACTAATTTAGTACCTTAGTACCAGAA
GAAAACAACTATTTTGGAACATGATTGGGTCTAAAATTGGTAAAAAGGTA
CACAATAAGACATTTCTGTGAACCCCTGGTAAAGTGTAAATGAAATTTAT
CCCCCTACTTTTCTATTTAGGAAAACAAACTGGATATGTATGTTGTGGAA
ATACTCTTACATGCCGGTGCACGTGAATATCTTCCACATTTTGCAAGACA
TCACGTGACTGAAATGGAAATGAACCAAATGACACGTGACCGATTGAAAG
AGGTTCCTTTTTTATTTGTTCTCCGTATTATTAGTTCTAAACTATCACAC
ATTCCCACTGCTCGGCTTATTACTCTTTGAAACCTCTTATCTCATGAATT
TAAATTTGATTGTCCTATTAATCCCAACGGGGTACGGGCCTATCGCCCGT
AAACGCACCGCCTTTATATTAGTAGGGGCTGAAGGTTGTAAAAGTTAAAA
GAAACTAATTTCAGGCATAATGGCGTAAATTTTAATTCTGGTCCCTNCAC
CGCCTTTATATTAGTAGGGGCTGAAGGTTGTAAAAGTTAAAAGAAACTAA
TTTCAGGCATAATGGCGTAAATTTTAATTCTGGTCCCTGAAAGGCTATAT
TCCTGAAGAATACTTCCAATGAGGGTCACAAAGTTCTTGAAATTTCTAGC
TTCAATTTTAGCTTCTACTTCTTTCACTAAAGATTTTTGTGCCAAAATTT
GGGGCGATATATACCGTCGGTTACCCGACAAACTTAAAACACCGCCCTCC
AGCAGACCTTTATTGCTTAATTTGATCATGAAATTACATTCGTACTATTA
GCCTGTGCCACTTGTCATTTTTATATTTTTGCGTTAAACTTTCGCACAGG
CTAGTGTTTTTCAGCTTCGTAAAATTTTGGATCTTGATCATTAATAATCC
GTTTGACATGCCAATAACAAGTCCTATATAACACCCCTTTCTCACAGCCC
CCGGGAAACTTTTTCCCACAGCGGAGATAAGATTTTCTATCGAAATCCCG
ATGGGAACAAAGATTCTATTGTTCTAAAGTCGCAGATTCAAGTGGGGATG
GTTTTGGAGTGCAATTTTTTACATCGAATTTTGAAGAGGGGGTGGTATCA
AAGTCTATTTCCAAGTGGGGCTGAAATTGTAGGGTAATCTTCCCACCGGG
GACAAAATTTTGGCCAAATTTCCCAGTGGGGCTGGGGTCCCAGCGGGTTT
GTGACAGAGAGGTGTTTTATAATAATCTCATGTCATCCCTTTGTTCTTAT
CTTTCTTAGATCGGTGTACATAATGAAGAAATGATAAGCAACATTTTATC
AAACATTGATTCCACAAAGAGCATCAAAACGAAATTTGTCGAAAAAGAAA
CAGAAATATTTGTAAGTTTCATTTTCTCCGGGTGCTCTCTACAATGAAAT
TCAATAAGTTGATAGTTGTTGAAAGGATTTCTAAACCATTAAGTACCATT
AACTACGCACTTACTTCTACATAACTGAATCCTAACTTAAAACATATGCT
ACATTTGGACAGGGGTGTAGTTAAGAAAGTCATGTGAAAATGTTCCAGTC
CGACTTTACCTTTAACCCCCCCCCTCCATTGAATTATTATAGTTCCCGAT
AATTTACAGAAAGGTTAGTGGTAAAGTGTGTAAAGTGTGAGAGTGGCCTC
AATTATCACTATAAATCTTTCCTTGAGACCCGTGCACGTACACTTATCGA
TGTCCTTGGTCCCCTAGCCTTCTGCTCAGTAACTTGGTAACATTTCTTAG
GCAAACATTCTTTCCACATTTGAAATCGAATGGGGAATCTTATTTGTTCG
AGTTACAGAGAGATTCAAATTATAGAAAGTATTTAAAAAGGTTTCTCCTT
GACGGGGACTTTGAACAAGTTTTATTTATAGAAAGATTGGAATAATAGAA
GTTCGAATAAGCGAGAGTCTACTGTATATTAATCATATTGTTTATACTCC
TTTATCAGTCACCACAGAAGGAGGTGGTAGAGGATCCATTAGCAAATGCA
ACTCCATCACACGTGCCAAAGATGATTGCACCACCAGCTCTCGATGTGTG
TTCAGAATCCGAATGTGTCATTTGTCTAGAAGAACAGGTAACTCATAATT
TCACGACGAAAATATAAGTATTTTAAATAAAAAAATCTATTCGTTTGATA
CTTAAATATACAATTAATTTTAAATTTTTTTCTAATCCCACGCCACGTTA
ATTCAGTTTAGAATCTTCAATCTGTTTCGTTCGATTTTGGTCCTATTGAA
TTTGAAAGCTTTTAATTTATTCCCCAATAAGTCTTTAGGCCCAAAATTCG
GTTTTGACTTATTAGGAAGGGTCGGCCATTATCAGACTCGGCGTACGAGG
ACCAGGTATTATTTATATATTTGTATAATTTCTACATTTCTACCTTTTCA
GCCATCAGTTGTATTTTTGACTTGTGGTCACGTGTGTTGTTGCGCAACAT
GTTGCCAACCATTGGATATATGTCCGTTATGCCGGCAGCCGATCACACAG
AAATGTCGCTTGTACCGAAGTATGTAAAATGAAAAAAAGATGTAACCTCC
TAGCTACGCTACAGATGTACAATACCCAAAAAGCGCACTGCATTGTGGGT
AGTAAAATGAAATTATAGCTTCCACTGTCAAATTACCGTGATAAGATGAC
ATGGAGAGATCTTGGAATTTTGTCTATTACATGATACTAACACTAACATT
GCGTTTATCAAACCAAGGTGTGATCAAATGTATTATACTTATTTGATGTA
TCATGTCTAAGCGTACGCAACAAGCATGTTAGACGTTATAATTTCATAAT
ATCTACCCAATGAACAATCGGAGCAATCAGAAAATGTAATATGTAATCCC
TGGTCTAACTAGTATATTGGTATAAGTAATAAGTAACGGTAAATAATTAT
TTGGAAGTAAGATGGATCATGATTTTACATGATGTTGGCATCACTAAATG
GAGAAAAATGAAAAAGTTGATCGAATTTTCAGTCATGAAATAATTTTTGG
CCTTCATTCAAAATGTTTATATAGTAATTGATAATGAAATGACTTATTTA
TTTTAAATGATACTCTTGGAATTATAAGTTCAGTTAATTTTTCAGCGTTC
TTTCTAATTAGTGGGCATTGTCACGGAAATGAACAATGATGGAAAAAGGG
GTAGTAGCAAATCATAAGAATTTTCAACCTTTCGAAAGTATTTTGAGAGT
GTTAGGCTTACGTCATATCTTACTTCATTTCGAGCGTAAAATTCCTTCTC
TTCGAGATATGTGCACTGCTCGTGTTTTGAATATTGAAATCCTCCGAATA
CACCGCATGCGACGGTGGTCCCTCATAACCTATAGAACTAGAGTAAGGCC
TAAAAGCCTGTACTTCGTACCACGTTTATCGCTTTGTAGTACATAGCCTG
GGAATCCATGCTATGATTTCTTCTTTGATAAACTGATGGCGAAATGTATA
GCATGGTACGGGCTGAGAGTTTGAATTTCTCA

Coding sequence (CDS) from alignment at scaffold_439:363349..382880-

>TCONS_00065425 ID=TCONS_00065425|Name=TCONS_00065425|organism=Clytia hemisphaerica|type=CDS|length=1533bp|location=Sequence derived from alignment at scaffold_439:363349..382880- (Clytia hemisphaerica)
ATGAAAGGCGAAGAGTATTTCTCTCAAGATCTCCTTGATGCTCCCAAATC
CCCAACACGATCCGTATGCACAACTCCTGATGATGATTTTGAAGAAAGTA
TCAAGAAACGGGAAGAACTGAAATTAAAAGAACAAGAAAAGCGCTTACAG
ATTGAGCGTGAGATTTTGGAGGGTCAAGAAGATACAGCCAAACTGGTTGC
TAATGCAGAACAACAAAGACATAAATTCCATGTGGATCTAGAAAAGAGCA
ACCTCCAAGCACAGACGGAGCTAGCTGAACAATTTAATCACGAAAACCAA
CAACGAAATAAACTCCTGGAGGAACTTTATTTAGGAGAGGAAAGTCATTT
CAATGAAACTGTCAACCTACTTGTTAGCATGGCCGAAAGGCGGAAACATA
CAGATCAGATACTGGAAGAGCTGGAACAAGAACAAGAACGTATAGATGCT
TTGGTGAGGATCACGAGCGAAGAAACAGAAAGATTACGTAAACAAGAAAT
GATCGAGGCAATGGCTTATGTTTTGAAAGAAATGGAACTCAACAAAGCGA
AATGGGAAGAATATGAAAATCGAAAGAAAGAAACAATGGTCAAATCAATC
TGCAGGGACGTTCAAGATCAAGAAGATCTTGAAAAAGTGTTGAAAGAAAA
AGATGAAGATCAATCACGTCTCCTGCAAACTGTCATTACGGAGGAAGAGA
AACAACGTGCAGCCTTCGAGATGCTTCAATTTCAAAAGGATTCAAGGCTG
AATCGAATCAAGAAAGAGGTGAAGATAATCGAGACAGAGTTAGCGAGATT
ATCATTGTTGGAACGACAGAAACGTGAAGAAAAACACGACGATGAAGTTA
ACACGCTTGCAGAGATGAGATTGCAGACTGCCATCTTGTTATCACAGTTG
ATAGATGAACAAGAGAAACGAGAACAAAGATTGAAATCCACTATCCACAA
AATGGAAGAGGAGAGAGATGACCAAACTAAAGATTTCTGGTTGATTCAAT
TCCAACGTCTCGTGGATAACAAACCACAACTCTTGATCGATGACGAAAAC
AAACTGGATATGTATGTTGTGGAAATACTCTTACATGCCGGTGCACGTGA
ATATCTTCCACATTTTGCAAGACATCACGTGACTGAAATGGAAATGAACC
AAATGACACGTGACCGATTGAAAGAGATCGGTGTACATAATGAAGAAATG
ATAAGCAACATTTTATCAAACATTGATTCCACAAAGAGCATCAAAACGAA
ATTTGTCGAAAAAGAAACAGAAATATTTTCACCACAGAAGGAGGTGGTAG
AGGATCCATTAGCAAATGCAACTCCATCACACGTGCCAAAGATGATTGCA
CCACCAGCTCTCGATGTGTGTTCAGAATCCGAATGTGTCATTTGTCTAGA
AGAACAGCCATCAGTTGTATTTTTGACTTGTGGTCACGTGTGTTGTTGCG
CAACATGTTGCCAACCATTGGATATATGTCCGTTATGCCGGCAGCCGATC
ACACAGAAATGTCGCTTGTACCGAAGTATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041002XLOC_041002Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065425-proteinTCONS_00065425-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065425-exon-scaffold_439-1575043694:382842..382880TCONS_00065425-exon-scaffold_439-1575043694:382842..382880Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:382660..382704TCONS_00065425-exon-scaffold_439-1575043694:382660..382704Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:382280..382354TCONS_00065425-exon-scaffold_439-1575043694:382280..382354Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:381965..382033TCONS_00065425-exon-scaffold_439-1575043694:381965..382033Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:379935..380019TCONS_00065425-exon-scaffold_439-1575043694:379935..380019Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:379564..379688TCONS_00065425-exon-scaffold_439-1575043694:379564..379688Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:379282..379324TCONS_00065425-exon-scaffold_439-1575043694:379282..379324Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:379048..379095TCONS_00065425-exon-scaffold_439-1575043694:379048..379095Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:378596..378643TCONS_00065425-exon-scaffold_439-1575043694:378596..378643Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:378257..378300TCONS_00065425-exon-scaffold_439-1575043694:378257..378300Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:377564..377716TCONS_00065425-exon-scaffold_439-1575043694:377564..377716Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:376442..376532TCONS_00065425-exon-scaffold_439-1575043694:376442..376532Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:376286..376337TCONS_00065425-exon-scaffold_439-1575043694:376286..376337Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:375912..375956TCONS_00065425-exon-scaffold_439-1575043694:375912..375956Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:370878..370948TCONS_00065425-exon-scaffold_439-1575043694:370878..370948Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:370638..370737TCONS_00065425-exon-scaffold_439-1575043694:370638..370737Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:370094..370181TCONS_00065425-exon-scaffold_439-1575043694:370094..370181Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:369842..369916TCONS_00065425-exon-scaffold_439-1575043694:369842..369916Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:369305..369385TCONS_00065425-exon-scaffold_439-1575043694:369305..369385Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:368374..368469TCONS_00065425-exon-scaffold_439-1575043694:368374..368469Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:367151..367249TCONS_00065425-exon-scaffold_439-1575043694:367151..367249Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:366579..366710TCONS_00065425-exon-scaffold_439-1575043694:366579..366710Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:365470..365571TCONS_00065425-exon-scaffold_439-1575043694:365470..365571Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:364744..364872TCONS_00065425-exon-scaffold_439-1575043694:364744..364872Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1575043694:363349..364429TCONS_00065425-exon-scaffold_439-1575043694:363349..364429Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:382842..382880TCONS_00065425-exon-scaffold_439-1510915933:382842..382880Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:382660..382704TCONS_00065425-exon-scaffold_439-1510915933:382660..382704Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:382280..382354TCONS_00065425-exon-scaffold_439-1510915933:382280..382354Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:381965..382033TCONS_00065425-exon-scaffold_439-1510915933:381965..382033Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:379935..380019TCONS_00065425-exon-scaffold_439-1510915933:379935..380019Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:379564..379688TCONS_00065425-exon-scaffold_439-1510915933:379564..379688Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:379282..379324TCONS_00065425-exon-scaffold_439-1510915933:379282..379324Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:379048..379095TCONS_00065425-exon-scaffold_439-1510915933:379048..379095Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:378596..378643TCONS_00065425-exon-scaffold_439-1510915933:378596..378643Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:378257..378300TCONS_00065425-exon-scaffold_439-1510915933:378257..378300Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:377564..377716TCONS_00065425-exon-scaffold_439-1510915933:377564..377716Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:376442..376532TCONS_00065425-exon-scaffold_439-1510915933:376442..376532Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:376286..376337TCONS_00065425-exon-scaffold_439-1510915933:376286..376337Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:375912..375956TCONS_00065425-exon-scaffold_439-1510915933:375912..375956Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:370878..370948TCONS_00065425-exon-scaffold_439-1510915933:370878..370948Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:370638..370737TCONS_00065425-exon-scaffold_439-1510915933:370638..370737Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:370094..370181TCONS_00065425-exon-scaffold_439-1510915933:370094..370181Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:369842..369916TCONS_00065425-exon-scaffold_439-1510915933:369842..369916Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:369305..369385TCONS_00065425-exon-scaffold_439-1510915933:369305..369385Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:368374..368469TCONS_00065425-exon-scaffold_439-1510915933:368374..368469Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:367151..367249TCONS_00065425-exon-scaffold_439-1510915933:367151..367249Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:366579..366710TCONS_00065425-exon-scaffold_439-1510915933:366579..366710Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:365470..365571TCONS_00065425-exon-scaffold_439-1510915933:365470..365571Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:364744..364872TCONS_00065425-exon-scaffold_439-1510915933:364744..364872Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1510915933:363349..364429TCONS_00065425-exon-scaffold_439-1510915933:363349..364429Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:382842..382880TCONS_00065425-exon-scaffold_439-1491911889:382842..382880Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:382660..382704TCONS_00065425-exon-scaffold_439-1491911889:382660..382704Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:382280..382354TCONS_00065425-exon-scaffold_439-1491911889:382280..382354Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:381965..382033TCONS_00065425-exon-scaffold_439-1491911889:381965..382033Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:379935..380019TCONS_00065425-exon-scaffold_439-1491911889:379935..380019Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:379564..379688TCONS_00065425-exon-scaffold_439-1491911889:379564..379688Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:379282..379324TCONS_00065425-exon-scaffold_439-1491911889:379282..379324Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:379048..379095TCONS_00065425-exon-scaffold_439-1491911889:379048..379095Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:378596..378643TCONS_00065425-exon-scaffold_439-1491911889:378596..378643Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:378257..378300TCONS_00065425-exon-scaffold_439-1491911889:378257..378300Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:377564..377716TCONS_00065425-exon-scaffold_439-1491911889:377564..377716Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:376442..376532TCONS_00065425-exon-scaffold_439-1491911889:376442..376532Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:376286..376337TCONS_00065425-exon-scaffold_439-1491911889:376286..376337Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:375912..375956TCONS_00065425-exon-scaffold_439-1491911889:375912..375956Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:370878..370948TCONS_00065425-exon-scaffold_439-1491911889:370878..370948Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:370638..370737TCONS_00065425-exon-scaffold_439-1491911889:370638..370737Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:370094..370181TCONS_00065425-exon-scaffold_439-1491911889:370094..370181Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:369842..369916TCONS_00065425-exon-scaffold_439-1491911889:369842..369916Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:369305..369385TCONS_00065425-exon-scaffold_439-1491911889:369305..369385Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:368374..368469TCONS_00065425-exon-scaffold_439-1491911889:368374..368469Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:367151..367249TCONS_00065425-exon-scaffold_439-1491911889:367151..367249Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:366579..366710TCONS_00065425-exon-scaffold_439-1491911889:366579..366710Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:365470..365571TCONS_00065425-exon-scaffold_439-1491911889:365470..365571Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:364744..364872TCONS_00065425-exon-scaffold_439-1491911889:364744..364872Clytia hemisphaericaexon
TCONS_00065425-exon-scaffold_439-1491911889:363349..364429TCONS_00065425-exon-scaffold_439-1491911889:363349..364429Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:363349..382880 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.8775	19.1156	15.292	14.4381	23.2824	17.945	22.0277	24.0882	22.0486	24.1707	30.0438	20.3386	33.8333	32.5562	17.8576	25.3673	19.9008	24.0595	40.0142	45.5268	40.0219	40.4363	25.1792	34.0264	54.6366	52.2342	40.8344	36.609	28.5746	26.2407
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR001841Znf_RING
IPR013761SAM/pointed
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00065425 vs. Swiss-Prot (Human)
Match: LRSM1 (E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens GN=LRSAM1 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 3.771e-61
Identity = 208/691 (30.10%), Postives = 354/691 (51.23%), Query Frame = 1 
Query:   49 GIYSKCKILNKQALLLQHNLLEDLKGGGNXXXXXXXXXXXXXH-NRLKVLPKEIKCLVNLQRFDISHNKIKKLPDEIGSLKALEKFDCSNNDLSGLPGTIKYFKNLTTLNITENRFITSLPVNLCFCKKLKEFIFDVDRITYPSKQFTSQGIEEIQRFFKKMKGEEYF--SQDLL------------DAPKSPTRSVCTTPDDDFXXXXXXXXXXXXXXXXXXXXXXREILE-------GQEDTAKLVANAEQQRHKFHVDLEKSNLQAQTELAEQFNHENQQRNKLLEELYLGEESHFNETVNLLVSMAERRKHTDQIXXXXXXXXXRIDALVRITSEETERLRKQEMIEAMAYVLKEMELNKAKWEEYENRKKETMVKSICRDVQXXXXXXXXXXXXXXXXSRLLQTVITEEEKQRAAFEMLQFQKDSRLNRIKKEVKIIETELARLSLLERQKREEKHDDEVNTLAEMRLQTAILLSQLIDEQEKREQRLKSTIHKMEEERDDQTKDFWLIQFQRLVDNKPQLLIDDENKLDMYVVEILLHAGAREYLPHFARHHVTEMEMNQMTRDRLKEIGVHNEEMISNILSNIDSTKSIKTKFVEKETEIFSPQKEVVEDPLANATPSHVPKMIAPPALDVCSESECVICLEEQPSVVFLTXXXXXXXXXXXQPLDICPLCRQPITQKCRLYRS 2055
            G ++ CK+L K+ L++  N L  L            + +   H N+L  LP ++  L  LQ  ++  N++ +LP  IG+L  L+  +  +N L  LP T+   ++L TLNI+ N  I  LP  L   + L+    D   + YP ++    G   I +F  K  G EY+  SQ LL            D+P  PT        D F     + +      ++++ Q   E LE       GQ +  +L+  +  Q+ +    +++   + +  L+E   H N +R +L E+L   E+ + +  +  L+   +R+K + +IL+ LE E+ R++ L+ IT EETE LR++++  AM  +L E   N+     YE++++  + ++     +  E  +++L  +  DQ++ +  ++ E   Q+AAFE LQ +KD    +I+ ++K+IETEL +L+ LE +++    +     ++E R   + LL QL+ E+++RE+ L+  + ++E + + + +++WLIQ+QRL++ KP  L   E  ++  +V +L    A  YLP FA H ++   ++QM+   L ++GV    +   IL  +             + E+  P  EVV  P A   P    +  APPA      SECV+CLE +  ++FL CGHVCCC  CCQPL  CPLCRQ I Q+ R+Y S
Sbjct:   47 GAFATCKVLQKKVLIVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLPRSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNE-IQRLPQMLAHVRTLEMLSLDASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQYLLPILEQDGIENSRDSPDGPT--------DRFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVKEEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQ-NISSRIQKLLQDNQRQKKSSEILKSLENERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSSMAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIETELLQLTQLELKRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKSETRQENYWLIQYQRLLNQKPLSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLLSQMSPGDLAKVGVSEAGLQHEILRRVQEL----LDAARIQPELKPPMGEVV-TPTAPQEPPESVRPSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIYHS 722
The following BLAST results are available for this feature:
BLAST of TCONS_00065425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRSM13.771e-6130.10E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens... [more]
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