TCONS_00065695-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065695-protein
Unique NameTCONS_00065695-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length187

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065695-protein ID=TCONS_00065695-protein|Name=TCONS_00065695-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MIFFHFSAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGL
WDTAGQEDYDRLRPLSYPQTDVFLICFSLTSPASFENVRAKWFPEVNHHC
PNAPVVLVGTKLDLREDKETIEKLKEKKLVPITATTALQMSKEIGAVKYL
ECSALTQKGLKQVFDEAIRAVLCPKKPTKAKKGCTLL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041160XLOC_041160Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065695TCONS_00065695Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR003578Small_GTPase_Rho
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 107..127
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 101..114
score: 50.36
coord: 39..61
score: 50.07
coord: 149..171
score: 32.23
coord: 22..38
score: 30.58
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 7..174
e-value: 8.1E-11
score: 36.9
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 7..174
e-value: 3.6E-13
score: 54.7
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 7..174
e-value: 1.2E-124
score: 430.1
NoneNo IPR availableGENE3D3.30.70.1390coord: 6..69
e-value: 1.1E-17
score: 63.3
NoneNo IPR availableGENE3D3.40.50.300coord: 70..175
e-value: 1.9E-30
score: 104.5
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 7..172
e-value: 4.7E-51
score: 172.5
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 7..152
e-value: 3.1E-34
score: 116.1
IPR003578Small GTPase superfamily, Rho typePROSITEPS51420RHOcoord: 1..171
score: 27.255
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..171

Blast
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BLAST of TCONS_00065695-protein vs. Swiss-Prot (Human)
Match: RAC1 (Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens GN=RAC1 PE=1 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.881e-115
Identity = 154/181 (85.08%), Postives = 163/181 (90.06%), Query Frame = 0 
Query:    7 SAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLTSPASFENVRAKWFPEVNHHCPNAPVVLVGTKLDLREDKETIEKLKEKKLVPITATTALQMSKEIGAVKYLECSALTQKGLKQVFDEAIRAVLCPKKPTKAKKGCTLL 187
             AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSL SPASFENVRAKW+PEV HHCPN P++LVGTKLDLR+DK+TIEKLKEKKL PIT    L M+KEIGAVKYLECSALTQ+GLK VFDEAIRAVLCP    K K+ C LL
Sbjct:   12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
The following BLAST results are available for this feature:
BLAST of TCONS_00065695-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAC11.881e-11585.08Ras-related C3 botulinum toxin substrate 1 OS=Homo... [more]
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