TCONS_00065695 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065695
Unique NameTCONS_00065695
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2959

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065695 ID=TCONS_00065695|Name=TCONS_00065695|organism=Clytia hemisphaerica|type=transcript|length=2959bp
cgattagtttcaattgcgatttttgttcgaagttgttcgattgacaccgt
ctgttGATATGAGATGAAGTCCTTGATATTTTCTATGTTATTTTCTTGTG
GAACCACAGTGAATATCTCTAAAATCTGTAAATTTCTAAATAGTAGCTCT
ATAACTACAATGTatccttaacttgaacaagttttctttttctttttttt
tgtatttccgCACGTGTTCGAGTTTTTGAAACTCCACTGTAgctgaaatt
ttccaaaatcctCGAAGGCCATTATAGCCATGGCATTTAAAGCAATTAGA
TTGACGATTGTAGAGATTGAATAGAAAAGTATATGACATAAGTGTataca
gtcagggaaatccctcaatcgCGGTAGTAATTTTTTGCTGCAAATGCGTT
ATAAACatcacttttacatttttcatatactGCTATTGCAGTATATTCAT
TTTGTATATCAGactctttcaataaaaaaagctttcttgtacaatttttt
acagtcaatgtttgtttatctttgttgaCCAGCACTATATctggtaccgt
gagtggtcctaaatccgacagccctgcctaaatccgacagccctgcctaa
atccgacagccctgcctaaatccgatggggtctttcaaagatacaaacta
aaattaaactcacacttttttatcacattaattgacatcttgacattata
acCATCTTgctagatgttttgttttgagagtccttgcaatagtttattat
TCAACTCGGAgaaggaatgtttgtaaacatagaatttttttcataacagt
tatttggggtgtcggaattaggcagggctgtcagatttaggaccactcac
ggtacaaTATAGGACACTAGTGTATTCTGTAAAGTCATTGAGCAGgatat
tttcatttaataaccTATAACTATTTATTAGTGATGATCAAATAGAATTA
GTTGTTGAGCTACCactgttgaaatttctttttgaaaaaattgcagaaaa
ttcttgacgaaacaaattttatttattgttctatGGCAAGACCTTCAGAA
AAATATAGGTCGGTCAGTAGTTATAATAAGAATAAATCTcttaaaatcta
gggtcggaAAATCAAGATCTAACCGGAtctaaaacatttttgaagcagta
agcctatttttcaaattcatcaagTTCTTGGATGAAATTATACACTTTTC
AAATTGTTCAGTTAAAAACATCTGCTAAAAACTTATAAATatgattttct
ttcattttagtgCCGTTGGAAAAACGTGCTTGTTGATCAGTTACACAACG
AATGCCTTTCCTGGTGAATATATTCCTACTGTATTTGATAATTACTCAGC
CAATGTTATGGTAGATGGTAAACCAATCAATCTTGGATTGTGGGATACAG
CAGGTCAAGAAGATTACGACAGATTGAGACCCCTTTCATACCCACAAACA
GATGTATTCTTGATCTGCTTCTCACTGACCAGTCCTGCATCTTTTGAAAA
CGTCCGTGCAAAATGGTTTCCAGAAGTTAATCATCACTGTCCTAACGCAC
CAGTCGTTCTTGTTGGTACAAAGCTTGATTTACGAGAGGATAAAGaaaca
attgaaaaattaaaggaaAAGAAATTAGTGCCTATTACTGCTACTACCGC
TTTACAAATGTCAAAAGAAATCGGAGCTGTCAAATACCTAGAGTGCTCTG
CTCTCACACAAAAAGGACTTAAACAAGTTTTCGATGAAGCTATTCGTGCT
GTACTTTGTCCTAAGAAACCAACTAAAGCAAAGAAAGGATGTACGCTGTT
ATAGAATCGGTTTCAAAGAAGCACAACATACCCTTCGCACTGTTATTATA
TGTTGACCCCAAAGTAAATTAATATACATCGCAATCGACTCCGAAAGCTG
GCCATAGTTTTGCTGGGTTTAACTGGATCAATCTACACTAAGCCAACAAA
GTGATTTACACCTGACGTGATTTTATCGGTATACAAATTTAATGaagata
cacattttttatactGATGTACgtaaaaaaactgaaactttATGGTTTTC
AGtatttgatattgttgtgaCAAGGACTGTCTCAAAAAAGAGTGATAAAA
TTATTGGAAATTGAAACAAAAGATTCAAAgacaaattttcctttttcatc
ttcaagtgtacattttgcaattttcttcatattttgttacatttttgtcc
atgtttttttttgccttttattttttttggggggCGCGAATCTATCTTTC
AATACATCTTAATTTTGACGATTTCTTGGAATTTTGTTGTCTTAGTTTTT
AAAATCTAGCTCTCACGACATAAATTTTGATACTTCTCTTCAAAGTAATA
ATCAGTAACAACTTGAAGTTGTctgtaaaatttttatttatcaaggaaaa
aagtcttgaaattcTTAGGCTTTTTTTTGATAGATACCATATATAtagta
ataaaataataaattgtattctagaaaatttttttgctctCTGTGTAATT
CTAGTCTAACACGtgattttttatagaaaaaatgtgtttttattTGTTCC
AGAATAATTGCCCAATTTTGATTTGGAATTTCACCTGGTGAATTTCTATA
TTGTTTAGCGATACTGAATGATCTATAAaatgagatgccttggagttttt
acaagatacttcactaattggtcatctaaagtgatagagatgacgcgttc
tttagaaaaagtaataagattcttttattacatcttaacgaccaaccaaa
tcaaataagagcttgtaaaaactccagcttgtccctatAAAATACACCTT
CTAAAAGCAATTTTAGTctggaaattacaaattacatTACGCATTGTTGT
AACCTCATTTCCGTAGcacaattcttttgaaattgtaGCAAACTTGTTTC
GAAATCAAATTGACATTTCTTATTGTCGAGGAATATCAAATTTCCATATT
GGTTAATAT
Run BLAST on NCBI

protein sequence of TCONS_00065695-protein

>TCONS_00065695-protein ID=TCONS_00065695-protein|Name=TCONS_00065695-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MIFFHFSAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGL
WDTAGQEDYDRLRPLSYPQTDVFLICFSLTSPASFENVRAKWFPEVNHHC
PNAPVVLVGTKLDLREDKETIEKLKEKKLVPITATTALQMSKEIGAVKYL
ECSALTQKGLKQVFDEAIRAVLCPKKPTKAKKGCTLL
Run BLAST on NCBI

transcript from alignment at scaffold_443:235377..239786+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065695 ID=TCONS_00065695|Name=TCONS_00065695|organism=Clytia hemisphaerica|type=transcript|length=4410bp|location=Sequence derived from alignment at scaffold_443:235377..239786+ (Clytia hemisphaerica)
cgattagtttcaattgcgatttttgttcgaagttgttcgattgacaccgt
ctgttGATATGAGATGAAGTCCTTGATATTTTCTATGTTATTTTCTTGTG
GAACCACAGTGAATATCTCTAAAATCTGTAAATTTCTAAATAGTAGCTCT
ATAACTACAATGTatccttaacttgaacaagttttctttttctttttttt
tgtatttccgCACGTGTTCGAGTTTTTGAAACTCCACTGTAgctgaaatt
ttccaaaatcctCGAAGGCCATTATAGCCATGGCATTTAAAGCAATTAGA
TTGACGATTGTAGAGATTGAATAGAAAAGTATATGACATAAGTGTataca
gtcagggaaatccctcaatcgCGGTAGTAATTTTTTGCTGCAAATGCGTT
ATAAACatcacttttacatttttcatatactGCTATTGCAGTATATTCAT
TTTGTATATCAGactctttcaataaaaaaagctttcttgtacaatttttt
acagtcaatgtttgtttatctttgttgaCCAGCACTATATctggtaccgt
gagtggtcctaaatccgacagccctgcctaaatccgacagccctgcctaa
atccgacagccctgcctaaatccgatggggtctttcaaagatacaaacta
aaattaaactcacacttttttatcacattaattgacatcttgacattata
acCATCTTgctagatgttttgttttgagagtccttgcaatagtttattat
TCAACTCGGAgaaggaatgtttgtaaacatagaatttttttcataacagt
tatttggggtgtcggaattaggcagggctgtcagatttaggaccactcac
ggtacaaTATAGGACACTAGTGTATTCTGTAAAGTCATTGAGCAGgatat
tttcatttaataaccTATAACTATTTATTAGTGATGATCAAATAGAATTA
GTTGTTGAGCTACCactgttgaaatttctttttgaaaaaattgcagaaaa
ttcttgacgaaacaaattttatttattgttctatGGCAAGACCTTCAGAA
AAATATAGGTCGGTCAGTAGTTATAATAAGAATAAATCTcttaaaatcta
gggtcggaAAATCAAGATCTAACCGGAtctaaaacatttttgaagcagta
agcctatttttcaaattcatcaagTTCTTGGATGAAATTATACACTTTTC
AAATTGTTCAGTTAAAAACATCTGCTAAAAACTTATAAATatgattttct
ttcattttagtgCCGTTGGAAAAACGTGCTTGTTGATCAGTTACACAACG
AATGCCTTTCCTGGTGAATATATTCCTACTGTGTAAGTAACTTCCTTGTC
AAATAAACCAAGCCATNCCTGGTGAATATATTCCTACTGTGTAAGTAACT
TCCTTGTCAAATAAACCAAACCATTCTAATAAGGCTGGACATTGTctgtt
ggtggccaaaaagggcaactTGTTTAGTAATTTCCACTAAGAAGGCTTAC
AAGTATGTGCTGCCCTTAAGGATGCCTTATTTTGAGTCCTTGTAATCATA
aaggttgaaaaataagaaaatgttaacTTTTTGCTCATTGTGTATGATCA
TAATTTGGTCAGACTAGTCTGTATTAGcccatattttccttttttccatC
CTTTTCAGTCACAAAAAGGGTCAGAGGGTTGAAAGTTGAGCAGTACAACC
GTCAGCTAGCAACCCTTGTACCAACCACCTCCCCCTGGAGCAGATTCTTT
ATAGCTTTCTATCAATTCTCTCATTATCTCATTTAAAATACTTCTTACAG
ATTTGATAATTACTCAGCCAATGTTATGGTAGATGGTAAACCAATCAATC
TTGGATTGTGGGATACAGCAGGTTGGTTTTTaatcttttacaaaaatgat
ttaaatgTCTAACAGTTTTAGGACAACTAAACGATTAATACAATGTGTCA
ATTTTGGGATCTTAGATCTTACAGAGCTTTATTGTGACTCTGTTTTTATA
TGTGATCATAACATAATCTGTGATAATTAGTCAcaacttcaaaatttcat
atttgaaAAGCCTACTGAAAATCTTCTTTACATTTTCTGATTAGCAATCA
GGTAGTTCGAAACCTTCGCTTTTCTCAACCAATCAGAATGtcttattcat
tattttttcaagaagtctAAAAATAATATGAAACCTGTTTTTACTGGAGA
GAATTTATGTAGAATGATTTCATGAATTACATACTAAGGTATAAATTTAA
TTTCTAGGTCAAGAAGATTACGACAGATTGAGACCCCTTTCATACCCACA
AACAGTAAGTGCCTTTTGAAGtcaattttactactttatactAAGGGAAC
TAATTAAGAATAgagaatgaaaaattgaatcatgaaatattttgctaGCA
CTCATTTTGGCAtgcattattttttttaatttggcaaGCAACAGGGTGAA
TTTTCTCTCTAAAGACGTGTTTAAAACGGAAATGAAGGGCTATTTTGGAA
AACTCACCAAATCTACCAAGATTAATTCtagccaaaattagttcccttaa
ggtatgttGTTTCTTGTGTCGCGTATTTAGTTTTTACAGCTTTTCCAGAA
GACCCAAATTCATTTAGGTTCATTATTTCCAACATGAACAAACTCACTGA
GTTCTGTGGTTGCTTTAGCTTTAAAAGCTAAAACCATTGAacttttacat
agttataatgtatgttgattcagcatattgaaataaatagaatcttttgt
aatgaataaagaaaaatgtgaagcaagattttcttcttctttttatttac
aaatttgaaaggactcttttattaaaattttgctgacatcagtttcagac
gagtcgggtgtatatataacaccgtataattcctttaaTTTGCTTCCTTA
GGATGTATTCTTGATCTGCTTCTCACTGACCAGTCCTGCATCTTTTGAAA
ACGTCCGTGCAAAATGGTTTCCAGAAGTTAATCATCACTGTCCTAACGCA
CCAGTCGTTCTTGTTGGTACAAAGCTTGATTTACGAGAGGATAAAGaaac
aattgaaaaattaaaggaaAAGAAATTAGTGCCTATTACTGCTACTACCG
CTTTACAAATGTCAAAAGAAATCGGAGCTGTCAAATACCTAGAGTGCTCT
GCTCTCACACAAAAAGGACTTAAACAAGTTTTCGATGAAGCTATTCGTGC
TGTACTTTGTCCTAAGAAACCAACTAAAGCAAAGAAAGGATGTACGCTGT
TATAGAATCGGTTTCAAAGAAGCACAACATACCCTTCGCACTGTTATTAT
ATGTTGACCCCAAAGTAAATTAATATACATCGCAATCGACTCCGAAAGCT
GGCCATAGTTTTGCTGGGTTTAACTGGATCAATCTACACTAAGCCAACAA
AGTGATTTACACCTGACGTGATTTTATCGGTATACAAATTTAATGaagat
acacattttttatactGATGTACgtaaaaaaactgaaactttATGGTTTT
CAGtatttgatattgttgtgaCAAGGACTGTCTCAAAAAAGAGTGATAAA
ATTATTGGAAATTGAAACAAAAGATTCAAAgacaaattttcctttttcat
cttcaagtgtacattttgcaattttcttcatattttgttacatttttgtc
catgtttttttttgccttttattttttttggggggCGCGAATCTATCTTT
CAATACATCTTAATTTTGACGATTTCTTGGAATTTTGTTGTCTTAGTTTT
TAAAATCTAGCTCTCACGACATAAATTTTGATACTTCTCTTCAAAGTAAT
AATCAGTAACAACTTGAAGTTGTctgtaaaatttttatttatcaaggaaa
aaagtcttgaaattcTTAGGCTTTTTTTTGATAGATACCATATATAtagt
aataaaataataaattgtattctagaaaatttttttgctctCTGTGTAAT
TCTAGTCTAACACGtgattttttatagaaaaaatgtgtttttattTGTTC
CAGAATAATTGCCCAATTTTGATTTGGAATTTCACCTGGTGAATTTCTAT
ATTGTTTAGCGATACTGAATGATCTATAAaatgagatgccttggagtttt
tacaagatacttcactaattggtcatctaaagtgatagagatgacgcgtt
ctttagaaaaagtaataagattcttttattacatcttaacgaccaaccaa
atcaaataagagcttgtaaaaactccagcttgtccctatAAAATACACCT
TCTAAAAGCAATTTTAGTctggaaattacaaattacatTACGCATTGTTG
TAACCTCATTTCCGTAGcacaattcttttgaaattgtaGCAAACTTGTTT
CGAAATCAAATTGACATTTCTTATTGTCGAGGAATATCAAATTTCCATAT
TGGTTAATAT

Coding sequence (CDS) from alignment at scaffold_443:235377..239786+

>TCONS_00065695 ID=TCONS_00065695|Name=TCONS_00065695|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_443:235377..239786+ (Clytia hemisphaerica)
atgattttctttcattttagtgCCGTTGGAAAAACGTGCTTGTTGATCAG
TTACACAACGAATGCCTTTCCTGGTGAATATATTCCTACTGTATTTGATA
ATTACTCAGCCAATGTTATGGTAGATGGTAAACCAATCAATCTTGGATTG
TGGGATACAGCAGGTCAAGAAGATTACGACAGATTGAGACCCCTTTCATA
CCCACAAACAGATGTATTCTTGATCTGCTTCTCACTGACCAGTCCTGCAT
CTTTTGAAAACGTCCGTGCAAAATGGTTTCCAGAAGTTAATCATCACTGT
CCTAACGCACCAGTCGTTCTTGTTGGTACAAAGCTTGATTTACGAGAGGA
TAAAGaaacaattgaaaaattaaaggaaAAGAAATTAGTGCCTATTACTG
CTACTACCGCTTTACAAATGTCAAAAGAAATCGGAGCTGTCAAATACCTA
GAGTGCTCTGCTCTCACACAAAAAGGACTTAAACAAGTTTTCGATGAAGC
TATTCGTGCTGTACTTTGTCCTAAGAAACCAACTAAAGCAAAGAAAGGAT
GTACGCTGTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041160XLOC_041160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065695-exon-scaffold_443-1491911889:235377..236708TCONS_00065695-exon-scaffold_443-1491911889:235377..236708Clytia hemisphaericaexon
TCONS_00065695-exon-scaffold_443-1510915933:235377..236708TCONS_00065695-exon-scaffold_443-1510915933:235377..236708Clytia hemisphaericaexon
TCONS_00065695-exon-scaffold_443-1575043694:235377..236708TCONS_00065695-exon-scaffold_443-1575043694:235377..236708Clytia hemisphaericaexon
TCONS_00065695-exon-scaffold_443-1491911889:237177..237247TCONS_00065695-exon-scaffold_443-1491911889:237177..237247Clytia hemisphaericaexon
TCONS_00065695-exon-scaffold_443-1510915933:237177..237247TCONS_00065695-exon-scaffold_443-1510915933:237177..237247Clytia hemisphaericaexon
TCONS_00065695-exon-scaffold_443-1575043694:237177..237247TCONS_00065695-exon-scaffold_443-1575043694:237177..237247Clytia hemisphaericaexon
TCONS_00065695-exon-scaffold_443-1491911889:237634..237680TCONS_00065695-exon-scaffold_443-1491911889:237634..237680Clytia hemisphaericaexon
TCONS_00065695-exon-scaffold_443-1510915933:237634..237680TCONS_00065695-exon-scaffold_443-1510915933:237634..237680Clytia hemisphaericaexon
TCONS_00065695-exon-scaffold_443-1575043694:237634..237680TCONS_00065695-exon-scaffold_443-1575043694:237634..237680Clytia hemisphaericaexon
TCONS_00065695-exon-scaffold_443-1491911889:238278..239786TCONS_00065695-exon-scaffold_443-1491911889:238278..239786Clytia hemisphaericaexon
TCONS_00065695-exon-scaffold_443-1510915933:238278..239786TCONS_00065695-exon-scaffold_443-1510915933:238278..239786Clytia hemisphaericaexon
TCONS_00065695-exon-scaffold_443-1575043694:238278..239786TCONS_00065695-exon-scaffold_443-1575043694:238278..239786Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065695-proteinTCONS_00065695-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_443supercontigscaffold_443:235377..239786 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
88.7282	88.1757	109.261	119.903	141.832	107.349	127.049	135.035	66.5887	72.4087	80.7827	53.401	65.8124	59.1501	51.9899	49.9978	62.3038	63.2066	82.8338	79.2468	81.8198	78.9714	62.7204	72.7452	73.8964	78.0428	64.2759	59.759	61.9728	64.5455
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR003578Small_GTPase_Rho
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00065695 vs. Swiss-Prot (Human)
Match: RAC1 (Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens GN=RAC1 PE=1 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 8.146e-94
Identity = 155/189 (82.01%), Postives = 165/189 (87.30%), Query Frame = 2 
Query: 1235 INMIFFHFSAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLTSPASFENVRAKWFPEVNHHCPNAPVVLVGTKLDLRXXXXXXXXXXXXXLVPITATTALQMSKEIGAVKYLECSALTQKGLKQVFDEAIRAVLCPKKPTKAKKGCTLL 1801
            I  +     AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSL SPASFENVRAKW+PEV HHCPN P++LVGTKLDLR+DK+TIEKLKEKKL PIT    L M+KEIGAVKYLECSALTQ+GLK VFDEAIRAVLCP    K K+ C LL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
The following BLAST results are available for this feature:
BLAST of TCONS_00065695 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAC18.146e-9482.01Ras-related C3 botulinum toxin substrate 1 OS=Homo... [more]
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