TCONS_00065703-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00065703-protein
Unique Name	TCONS_00065703-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	485

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00065703-protein ID=TCONS_00065703-protein|Name=TCONS_00065703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp
FKKGSISIIPDKDMLHGHPYSSLSNHSSSNSPLPSPASQISRGHHGPLTG
FSKIVEGTISSIGNINLSNSAPTYEKAPGSGRRSSSRDSDHHSSFFGHSL
GSEPHTPSRSMSASAPSFYPGPLPDESALDSGLLEALSTVDNTFDFDFPD
NSSVSSSIGGSTGIGGGTGSLSGGFNNSSLLGQFSNNGSTEPVSIPGSHE
SRHMSFNSQQSHSPTSPSLQQHNSGPNSSYYINQNESDLFSSFSSGSKKS
ILNSSRLSGSRAGFVRSPKSNPLNLYDMMSSPKFQSPSLTSPLAFGSGNL
NSSSLDVQRLTDEVLSLRNKLSSWEESWNQAKMTCEAWKREANEQAEKAK
AVDRERIQYGMKLGEMENEIRTLRHELENRSRLGSVGSNNSNTAHLLKNV
NDLENLPVLELKQLFNQLKLDLDKVEKVISKKESMKCTICEETPRCVVTY
PCTHCVMCEKCAGGQSECPFCKQAITQRNTIFIPV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041164	XLOC_041164	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00065703	TCONS_00065703	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 363..383
None	No IPR available	COILS	Coil	Coil	coord: 408..428
None	No IPR available	COILS	Coil	Coil	coord: 335..355
None	No IPR available	COILS	Coil	Coil	coord: 307..327
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 434..477 e-value: 2.8E-9 score: 36.6
None	No IPR available	GENE3D	1.10.1170.10		coord: 197..484 e-value: 5.2E-12 score: 45.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..278
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 436..477
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 437..472 score: 9.893
IPR001841	Zinc finger, RING-type	CDD	cd00162	RING	coord: 436..475 e-value: 7.19107E-5 score: 39.3512

Blast

[Close]

BLAST of TCONS_00065703-protein vs. Swiss-Prot (Human)
Match: UNK (RING finger protein unkempt homolog OS=Homo sapiens GN=UNK PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.739e-26
Identity = 121/370 (32.70%), Postives = 175/370 (47.30%), Query Frame = 0

Query:  111 MSASAPSFYPGPLPDESALDSGLLE------ALSTVDNTFDFDFPDNSSVSSSIGGSTGIGGGTGSLSGGFNNSSLLGQFSNNGSTEPVSIPGSHESRHMSFNSQQSHSPTSPSLQQHNSGPNSSYYINQNESDLFSSFSSGSKKSILNSSRLSGSRAGFVRSPKSNPLN--LYDMMSSPKFQSPSLTSPLAFGSGNLNSSSLDVQRLTDEVLSLRNKLSSWEESWNQAKMTCEAWKREANEQAEKAKAVDRERIQYGMKLGEMENEIRTLRHELENRSRLGSVGSNNSNTAHLLKNVNDLENLPVLELKQLFNQLKLDLDKVEKVISKKESMKCTICEETPRCVVTYPCTHCVMCEKCAGGQSECPFCK 472
            M+A+A  FYP     ES ++S L +       ++ ++ TFD     NS+V     GS  IGG            SLL       S+ PV+IPGS  S   SF+S     P S           SS+++ Q +  L     S S+ + L +S   GS          N +N  +++  +S  F SP  TSP AF SG     + ++ RL  E+    + +  WEESW QAK  C+AWK+EA E  E+A A   E      +   +E +++ L+ ELE   RL     +       L   +DLE L +  L  L  QL+  L++V+K +   +S+KC  C+E  R V+  PC H  +CE CA G SECP C+
Sbjct:  497 MNANALPFYPTSDTVESVIESALDDLDLNEFGVAALEKTFD-----NSTVPHP--GSITIGG------------SLLQ------SSAPVNIPGSLGSS-ASFHSASPSPPVS----------LSSHFLQQPQGHL-----SQSENTFLGTSASHGSLG-------LNGMNSSIWEHFASGSF-SPG-TSP-AFLSG---PGAAELARLRQELDEANSTIKQWEESWKQAKQACDAWKKEAEEAGERASAAGAECELAREQRDALEVQVKKLQEELE---RL-----HAGPEPQALPAFSDLEALSLSTLYSLQKQLRAHLEQVDKAVFHMQSVKCLKCQEQKRAVL--PCQHAALCELCAEG-SECPICQ 801

The following BLAST results are available for this feature:

BLAST of TCONS_00065703-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00065703-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UNK	1.739e-26	32.70	RING finger protein unkempt homolog OS=Homo sapien...	[more]

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TCONS_00065703-protein (polypeptide) - C. hemisphaerica