TCONS_00065703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065703
Unique NameTCONS_00065703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065703 ID=TCONS_00065703|Name=TCONS_00065703|organism=Clytia hemisphaerica|type=transcript|length=1829bp
ATTTTAAAAAAGGATCGATTTCAATAATACCTGACAAGGATatGCTTCAT
GGCCACCCATACAGTAGCTTATCCAACCATTCCAGCTCCAATTCACCTTT
ACCGTCACCGGCGAGTCAAATATCAAGAGGACATCACGGACCGTTGACTG
GATTCTCCAAAATCGTTGAAGGCACTATCAGTAGTATAGGAAATATTAAT
TTGAGCAATTCAGCGCCGACGTATGAGAAAGCACCAGGATCTGGACGTCG
AAGCAGTAGTAGAGACAGTGATCACCATAGTTCATTTTTCGGTCATTCGC
TTGGTTCTGAACCACATACACCATCCAGGTCAATGTCAGCTTCGGCTCCT
TCATTCTACCCTGGACCATTGCCAGACGAATCGGCACTGGACAGTGGCCT
ATTAGAAGCATTATCGACAGTAGACAATACGTTCGATTTCGATTTCCCGG
ACAATTCTTCCGTCAGCTCCTCCATTGGCGGGAGCACGGGCATCGGGGGC
GGTACCGGCTCACTGAGTGGCGGATTCAATAATAGTAGTTTATTAGGACA
ATTTTCAAATAACGGCTCCACAGAGCCAGTATCAATACCTGGGTCACACG
AATCAAGGCACATGTCATTTAACTCACAGCAGTCACATTCACCGACCTCG
CCCAGTCTCCAACAACACAACAGTGGACCCAATAGTAGTTATTATATTAA
TCAGaacGAATCTGACCTGTTTTCTTCATTCTCGTCTGGTTCGAAAAAGT
CCATACTGAATTCAAGTCGTTTATCTGGATCAAGGGCAGGCTTTGTACGG
AGTCCCAAATCAAACCCGTTGAACTTATACGACATGATGTCCTCACCTAA
ATTTCAATCTCCCTCCCTAACGTCACCGCTCGCTTTCGGAAGCGGAAACC
TGAATTCGAGTAGCCTGGACGTACAACGACTAACAGACGAAGTCTTATCA
TTACGTAATAAGTTGTCGTCATGGGAGGAGTCGTGGAATCAGGCAAAAAT
GACGTGTGAAGCGTGGAAACGAGAGGCTAACGAACAAGCGGAGAAAGCCA
AAGCCGTGGATAGAGAAAGGATACAATACGGAATGAAATTAGGAGAAATG
GAGAATGAAATTCGAACGTTACGCCATGAGCTCGAGAATCGAAGTAGATT
GGGTAGCGTTGGAAGCAATAACAGCAACACAGCacatttattaaaaaatg
tcaaCGACTTGGAAAACCTCCCTGTACTAGAACTGAAACAATTATTTAAT
CAATTGAAACTAGATTTAGATAAAGTGGAAAAGGTAATTAGCAAGAAAGA
ATCTATGAAATGTACAATTTGTGAAGAGACTCCACGATGTGTTGTCACTT
ATCCATGCACGCACTGTGTGATGTGCGAAAAGTGTGCTGGCGGACAGTCA
GAATGTCCATTCTGCAAACAGGCCATCACTCAACGAAACACCATTTTCAT
TCCTGTATGATTATGTTTGATGCATGGTGGTTTGGTTGATAGGTGATGAA
TGATGactgttaaacaatttttagttccaaaaaaaagaagaatcatAAAA
CATTTTAgaattattatattattgtcattataattatttctttaaacttt
tagcttaaaaaaatataattgccCCCCAATATGTTTAGTTTGGcactgtt
taaaaaaaatgtaaaattttttgactaatttttagAAGGATATATGTCCA
ATTTATATTTTGGTTCTACTTTCCTCTAGACTTAGAGCTTTTATTGATGT
TTattataaattgttttttcaacaTATGCTGGACTCTTTCAAACCTAAAA
TTAGAATTTCTTGATATCGTCAATTGAGN
Run BLAST on NCBI

protein sequence of TCONS_00065703-protein

>TCONS_00065703-protein ID=TCONS_00065703-protein|Name=TCONS_00065703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp
FKKGSISIIPDKDMLHGHPYSSLSNHSSSNSPLPSPASQISRGHHGPLTG
FSKIVEGTISSIGNINLSNSAPTYEKAPGSGRRSSSRDSDHHSSFFGHSL
GSEPHTPSRSMSASAPSFYPGPLPDESALDSGLLEALSTVDNTFDFDFPD
NSSVSSSIGGSTGIGGGTGSLSGGFNNSSLLGQFSNNGSTEPVSIPGSHE
SRHMSFNSQQSHSPTSPSLQQHNSGPNSSYYINQNESDLFSSFSSGSKKS
ILNSSRLSGSRAGFVRSPKSNPLNLYDMMSSPKFQSPSLTSPLAFGSGNL
NSSSLDVQRLTDEVLSLRNKLSSWEESWNQAKMTCEAWKREANEQAEKAK
AVDRERIQYGMKLGEMENEIRTLRHELENRSRLGSVGSNNSNTAHLLKNV
NDLENLPVLELKQLFNQLKLDLDKVEKVISKKESMKCTICEETPRCVVTY
PCTHCVMCEKCAGGQSECPFCKQAITQRNTIFIPV
Run BLAST on NCBI

transcript from alignment at scaffold_443:308304..318753+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065703 ID=TCONS_00065703|Name=TCONS_00065703|organism=Clytia hemisphaerica|type=transcript|length=10450bp|location=Sequence derived from alignment at scaffold_443:308304..318753+ (Clytia hemisphaerica)
ATTTTAAAAAAGGATCGATTTCAATAATACCTGACAAGGATGTAAgtcat
aggccatttcacagtccaaatggatcatgggtaattaAATTAATCAGGCT
TTCTGTTCGCAAGACTGCTATTAAAATAATTGTACTGCACTGTTGAATAA
ATTGCCCCATTGAACATCGAGACATGTCTACACTCTTAATTTTAAGGTAA
CTGTAATGGTTTACAAACTAACTTTTTTCCCAACTAACAATAACCCGACT
AGGTATCCATCTAAAATATattactttttgatattttagatGCTTCATGG
CCACCCATACAGTAGCTTATCCAACCATTCCAGCTCCAATTCACCTTTAC
CGTCACCGGCGAGTCAAATATCAAGAGGACATCACGGACCGTTGACTGGA
TTCTCCAAAATCGTTGAAGGCACTATCAGTAGTATAGGAAATATTAATTT
GAGCAATTCAGCGCCGACGTATGAGAAAGCACCAGGATCTGGACGTCGAA
GCAGTAGTAGAGACAGTGATCACCATGTAATAgttgttatgttttttttt
gatacaTTCAATACATGAATAAGTTTTCCAATTCATGCGTTGAAAGCTAA
AACTTTTAAATGCATTTAAAATGAACTATAATAGTTACCTCATACTTttg
tagattttgaaaaaaataccaaaacttaTTACTTCCAAGTTTATATCGGA
AGATGATAGGGGACACAGCATTTAGTGCAACGCATGATTGGTTTATAGCC
ACCAGATTCCCACTCCAATGATATATTCTTTCCATTTCTTTACAGAGTTC
ATTTTTCGGTCATTCGCTTGGTTCTGAACCACATACACCATCCAGGTCAA
TGTCAGCTTCGGCTCCTTCATTCTACCCTGGACCATTGCCAGACGAATCG
GCACTGGACAGTGGCCTATTAGAAGCATTATCGACAGTAGACAATACGTT
CGATTTCGATTTCCCGGACAATTCTTCCGTCAGCTCCTCCATTGGCGGGA
GCACGGGCATCGGGGGCGGTACCGGCTCACTGAGTGGCGGATTCAATAAT
AGTAGTTTATTAGGACAATTTTCAAATAACGGCTCCACAGAGCCAGTATC
AATACCTGGGTCACACGAATCAAGGCACATGTCATTTAACTCACAGCAGT
CACATTCACCGACCTCGCCCAGTCTCCAACAACACAACAGTGGACCCAAT
AGTAGTTATTATATTAATCAGGTAAGACTATTTTTATAATACTTTTCCTT
ATTgtacctaccccggtggaggtcctataaattaacctttgtccgttcgt
ccgttcgttagttattagctttcctcatgattggctcgttagttttttct
gattttttgcacaaagatgcataactataaaccctcgaatgtgacagagc
ccgattttcaaaacaaattttttttggccaaatatggtccaaaaaacggc
taaaaaacgggttttttggactttgtgaaaagttaggtcgttaatttttt
ctgattttttgcaggaaaatatggtaccatcataggtaaaagatggttca
aacagatttttgcaaaaaaattttgttggctcaaaaaacgcatgtttatc
tataagaatcactattaataaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaatcactatt
aataagcatacatcaatgttcttaaaattactgaattttttgatgagata
tgtttttttgctctcgaactcttgaatatgaaagaatatttcgagagcat
gaaattttgttttctaaacgtgttttttataagaaacaaacaactaattt
taatagatcgtcactatttgtgttctgaatgattgtttaatggtcacgct
tatgtagatatcaaTTATATATGTGTTAAATGCATAACCAGGTAGGTCCA
TAAAAGTATCACTTGTTTTCATATGGATGGATTTTTTGTCCACCCTTTAA
GGTTTTCTCTTTAAGTATAAAACTCTGTCTATATGATGTACAAAATCTAT
GTATGAGGTGCTAGTCTAGGATGGTTGTTTCAGACTAATAATAGAACTAT
GAGTTTCCCTTATGGCAGAGTTTATATTCAGGTTCATTTTAATTTACTAC
TGCTAGATTGCAAGTCTTGTCGCAATCTCTGAGTCAATCAACAAAAAGGT
CAACCCAAGAAATAACCAAGACAGAGTTAGCAGAGGAGGTGTTTTGAAAC
TTTGGGAGTGTGTAAGAAATTAGGTTTTAGGTTTACGCAGGTTGTGATTT
TTTAGGCCTTATTATCGAAAAAGGTTTGtcggtttttttaattttcaaga
cCAAACCAAGTATGAGAGATTTGTCCTTTGAGCACGTTTAGTATCAGTGT
TTGAAtagcttgaaagttagatttcggtTTAGGACTTATTATGAATGAGG
AACTGCGGGTGAcgctgaaatattttttttgagacTTTGAAATTGCGACT
TCAAAATAGATAATCACGCTTGCCCATAAGTCTGATTACTCTATAGATAT
AATTCTCATATTGGAAACCTTTTCGACATTGACGGaaattttgtgacatt
tttttctttgccaTTCTTTAAATCCCTGCTTCTCCCCTTCTTTGCTTATT
CCGTGATCTCAATctttttctcttgtttttttcataattcatgatattat
atTCATTTATCCATAAATGATTGAAAACGAATGAAATCATATATGCAAAA
AAAGtagaaagaaatgaaattatATAATATTTGCTCCGTCGCTCCACTCA
CTCAAGTAAAAGAGggaagcaaaagaaaaaacttttaaggCTTCTTCTAC
ACTGTCAAAATGTGGTCTTAGATTTTCAAGGGTTATTTTATTCCTGTAGT
TTTTAAATCTCACAGCCCGAACAACAAACCTTGTGGCTAGAGACTGAAAT
ACCTGCAACTCCTAGGCTTTTTTTCCATACCTATTGGCCTCTTGATTTAT
ATCTAtagtttttaaagttttcaaagGGTACCAGAAGCCAAAGCCTCAGG
GTACAAGCTTTGAAGACCAGTTTTACAAAGTCTGAAATTTGTAATAAAAG
AACAAAATGGCAGCAACTTATTAGCAAGAACAGCTTAGGAAAAGGGGTCA
CATTTCGCACGTGGATCCgcactagcaaaaaacagtacACGGTTACACAG
GGAATCTTAGCTATAATAGTAATACACGTTTTTACTTGAGGAAAAAAAAT
GCTCTGACAATAAGAAAACAGTAAGAGTTAAACTTGAACTTGTACACAcg
aaaagttgataaaatatttgTGAAACAATGTTCAATAAACTTCTTTTTCT
GTTAAGTAGTCATTTTACAAAGCATCAAATCAGTCCAAACTTTGCAGCTG
AGTAAAGAAGGAACTTGATAAGGAACTATGAGGTTGAAATTCTCTGAAGA
GATAAGGAACTCTAGGTTCGGAGCCAAGTCAAGATTCCTTATATAAAATA
AACGTGTATACGAAGGAAGCACCACTAGGCCGCTAGCATTAAAAAAAGTG
GTCTCTTAAGAGGTAATTCAACTGTCTACCGGCAGACCCACAGACCTCCT
GTTATTTAGAACGTTTTTAACATCTATATTGTCTTTTTTCCTTCCTTCAA
TATTGACATGCGCTATCCCTTCTTCTATATCTTGTTGGACTTGTTAATTA
TAAAGTTAAACATGGAAGTAGTTGGGATGAAGTGGGTTTTTCACAGTGGT
TTTGTCTTGTAGAACATTTCCTCCGACTTTTGGAATGTTGTTTTGTTTGA
GATACGATACTTCCtcatattggtgtctttttcaaatgataatacgcttt
catttttataagaatcagtaaaTTTCGGCTTAAagtgggctgttcttaat
tttttttaattttcaggtttAGATACGTTCTTAAGGTATTCTTaaaaatg
ggtttaaaatcttttaaaatcagtactgtcttgaggctcagattgtcttt
aattttggccaattttcagcctcgtgttcttataaagaaaatcttGTAAG
GACTCCAGACCACTTCAAgataaaatgtctttttttaacTTACCAATGGG
aacttctttttttaataactTCCGAATGGGATTAGGGTAGCATCAATTCA
ATATTTAAATTTGCACACTTTTTAATTGCCTGAAATGAAAAGAGACCTTC
AAACTTAATTTTCTCTGGAGTCTTTTATCCCATGCAGTTTTAGGTCGGTA
GGTTTTATTTAGCCTTGAGTCTTTCTTATATTAACTATCCGAGGCCAAAT
CAGAGTTAAAAAATATGTTAATGTAAACAAGCCCTTGTTTTCTTGAGTAC
ACGGAACACGATGATTGTTATAATAATAagagggaaaaaataaaaaccct
atgtttttttttttctgtgaaTTTAGTCCAGAGTTGtcccctttttttat
tttggttcaaGTCAAGAATTCTCAAAACAGTGTTTGTAAAATACGATTTA
CTTTTAGAAAATTGTTGCAAATAAGAAAAAGGCTTTTGTATAGTATGAAT
CGAAAGACCTTCttcatttcttattttataCCTTTAAACTAGATTAAAAC
TTGGGAATTTATAAAGTCAAACTTTGGCCAAGCTCAGGAAGGAAATGTTA
AATGTTTAATCTTGTTTTGCGGACTGTGAATTTATAGCTGTCCGGAAATT
TTATCTTTTGGTCTTTTGGAAACATAAACTTTAActgaatttgttttgat
tttttgcgaCCTTGCTTTTTTTGGtttggagttttttatttttatggaAT
CATAATTTCGAACGTCATTGGCTCACATCTTGgttgatttgatttaaaaa
atacgATGGTAAAATTAATTTCTACGATACTAATTCGGTATATTTTTTGT
ATAGGTGCTATTTACTTACCCTATACCAATGTTGCATTTTTTTCCGTCTA
ATTGAGTTTACAAACTTGTATTTCCGTTTCAAtaacattttccaaaatat
aAGTCCATTACCAGTCATTCTGCCTAGATTAGCCAGAGCTAGTTGCACCA
CTGCTTTACTAACTGTTTATGAAGGCAATACCCTGAAAGTTTTGACCGAT
GTCAAAAGGTATTGTCCCGAGCTTGATTTAAAATCGAGAAAGCTTGGCCA
GCTGTAGATATTTACCTAAAAAATGGTGTTATCTTGAAATTATAATCCAT
AGGTAAATGTGATTTTCGCATCATTGTCATAGATGGAAGCTAAGCTCTAC
CATGAAGTATTTTTTAGTTTGCTAATGATATTTTTCGCATTCAGCTGCAC
ATGCCGAAAATGCCATTCGTAAAAATTTACTCAACGCATAAATTAAATGG
TCATTTCTAGTctatgaggattttactttataaaattgtgtccgcttttc
gggacaccctgtataatcTACTTTGTAATTGCCCATACATGGAAATTCAT
CACGACGCATTCTTGTTTCTAAGGCAAACGAATACTTGGAGAAATAGATC
TTTGATTCCATGAGTATATTGTGTACTgtgaaatgaaatatttatagAGA
AATTGTAACTCTTTCCGTGTCTTAGAGGGTGGTGGTCAAATTGACCGTTC
GCCGAGCCAAATTCAGATGTTCATCTGTTAAAATAGCTAtgttcaaacaa
aaaaaaatttcatacccAAATATTTGATTTCTTAGGCCATCCCAATAAAT
ATTTGATTATTGAGAATCAATAAGATTTTCATTTCTGTTCAATTATCaac
ttttaatttcattttcatttttctaatttttttttcattttcaagaacGA
ATCTGACCTGTTTTCTTCATTCTCGTCTGGTTCGAAAAAGTCCATACTGA
ATTCAAGTCGTTTAGTAAGTAGACTTGTATTGTCAATTTGTAATACATGG
GCTTTGAAGTTAGTAATTCTGTGCTTTGATTTCAtgtaatttgcacgaaa
aaaTACCactgtaaacaaacttttatcTGCGCTCATTGGCTGAAATCTGC
GCAGATCCATATAACATCCAATCAGAGAGtttatttatattttcgtgCGC
CTTACAGGGAATCAAAACAGAACTagttcgaaacccgtgtatcgCTTATA
CAGTTTATCTTTTTAAGTTTGATAAGATATTGCTTAGAAGTCATGAAGGT
CTTCAGTTATCCCTTTATAAGTTTATTCTTCACTAGGTTCTTGCACTAAG
TTTTCAAGTCGAGAAAATTACTTTACCCAGTTATTCTAGTAATTTTTCGT
TAGTTCTTTGTTATTTGCCTTCGTTCGTAATTTGTTGAATTCTTAATTTC
CTATCATTTATGTAGCCCATGAATATTGAGAATTTACTACTAGTTAACTT
AGCGTTACAATTTGGGAGTGATGTATTCTGGGTTTCTCCGTCATAAAAGA
TAGCGCAATGAATATCAGAAATTATTTAAGTTGCTTGACCTTACCATTTA
TCTTTTAGTCTGGATCAAGGGCAGGCTTTGTACGGAGTCCCAAATCAAAC
CCGTTGAACTTATACGACATGATGTCCTCACCTAAATTTCAATCTCCCTC
CCTAACGTCACCGCTCGCTTTCGGAAGCGGAAACCTGAATTCGAGTAGCC
TGGACGTACAACGACTAACAGACGAAGTCTTATCATTACGTAATAAGTTG
TCGTCATGGGAGGAGTCGTGGAATCAGGCAAAAATGACGTGTGAAGCGTG
GAAACGAGAGGCTAACGAACAAGCGGAGAAAGCCAAAGCCGTGGATAGAG
AAAGGATACAATACGGAATGAAATTAGGAGAAGTAAGCTTATTGTGACAT
TtcctattttcattttctttccaTCGCCATCGGGAAGATCAGATTCCAGT
TTGGTGGAGTCTGGTGACGCCGCGTATAGTGCTCAAAGCTCTATCGTTTA
AAAAAGAAGTTATATCTGTCTCAAAACTCGAGAAAATTTGAGAGTAAtgg
tcaattttttgaattcatGGGCAATGTAACATCTCTTGGGGGAGGGAGCT
TCACGGTTTGTGGATGAGcagaatcggcccttttttcgagCGGTGGGGCA
GAAATCGACGAAAATTTGGACGGAATTTCGGGAATTTGGTCCTCTGCCGG
AGACGGAAAATTGAGACATCTAACGAAGCTAGCAAATAGTTTTGCGGAAT
TTTGGAATTAgcaaaaaatacttaaaattcacggaatttttgacaaaacc
tTGAATTTCGTTAGAAAAACTTCGTTGGCAGAATTTTGGTTCTTTTTTAG
ACGATTCTACGAAGCCGGCACGACGCACCGTATAGCGAGCACCTCATTAA
AAACCCTTTTGTTATGGCTGTGGAGATTGGGGAAAAATtagcggaattgc
ggaatcgggtaccccctgaacccCCTCCCCTCTCTTGCTCGGTTCATTCG
AAAGATTATTAAACTAAAGtaaattattttgcattttcGTAACAGATGGA
GAATGAAATTCGAACGTTACGCCATGAGCTCGAGAATCGAAGTAGATTGG
GTAGCGTTGGAAGCAATAACAGCAACACAGCacatttattaaaaaatgtc
aaCGACTTGGAAAACCTCCCTGTACTAGAACTGAAACAATTATTTAATCA
ATTGAAACTAGATTTAGATAAAGTGGAAAAGGTAAACGGTTATTGCTCCA
GAGTTTCACCTGTTTTTAATACTTTAAGGGATTAGAAATAATTACTAATC
ACCTTTAACAAATGAGataactttatattttgttttgaaacaacACGATC
TTCCTACACGCTTCCAACacgaaccagtaaattttgggtGATCCTGAGAT
TGTTCTTAtatttctattgttccaaacaatAGAGCTATTTGTTATTCTGA
GGGCGTAAATTTGAGGctggtattcttataaaattgttcttattataaat
caaaaagcgtgtatttgagAATAGACCTTATAAACCttgttttctaaaac
agctATGCATTGTGGGactgtttcgggggtattacaatagaattccctcg
aggaattcctaagagatttctattgtaataccccaaaacaatcccacaat
acatcgcttttttagaaaaatcaaaaactccgataagatctattattttt
ttatttgcgTTTGACCAGGTTTGACAGATCAAATTTACATCTTCGTTTTT
GATTGACAGGTAATTAGCAAGAAAGAATCTATGAAATGTACAATTTGTGA
AGAGACTCCACGATGTGTTGTCACTTATCCATGCACGCACTGTGTGATGT
GCGAAAAGTGTGCTGGCGGACAGTCAGAATGTCCATTCTGCAAACAGGCC
ATCACTCAACGAAACACCATTTTCATTCCTGTATGATTATGTTTGATGCA
TGGTGGTTTGGTTGATAGGTGATGAATGATGactgttaaacaatttttag
gtatttccaattttttcaacaatttctcACTTTTCAACATTATTTTAAAA
ACTAGAGAATTAGATTGAGTAACAAACCTAGCTAGCATAAAACgtttgtt
ttatttcaaaaacgCATTGATGATGATATTATGTCGTATCAGAACGCATT
GTGCTGGTCTATTATAAAACATGCTTTTCGTTTACGAGTTAATGTGCAAT
TATAAATTAGCTAGATATGAAAGTTGATCGGTCGATTAAGGATAGTTTGT
AGTTGATATAGTAGAGTGGTAAATTACTCTTCTCGCTTGAGTTCGTTGTT
TTAAGGATAGTTTTTTAGAGattgtatttctcttgccaataTATTAAATA
CGTAACCCCCCTCCCCGACCCTAACTTATTATATTTCATCATTAATTGTT
ATATTTTAACGACCCTCCTTGTCGATGTTTTAGAATTTTTACCTTaatct
tcaatatttttaagttttagcaaaattattttttcagttttggaaaaatc
aaaacCGAAAATTTANTTTTAAGttttagcaaaattattttttcagtttt
ggaaaaatcaaaacCGAAAATTTATCTTGGATCGAAGgaacttctttttt
tgaatgGCATTCTATTTTGATGCGGTATTCtaaaaaaaaaggttaaaatc
cCATAAGTTTTTGGGATTTAACCAAGAACAAGTGAAAGTATGTCcagcat
ttttcttttcaatcgtTAGAGTTGGTTTCTTGCTACAGCTAGTTTTCTTG
TTCGTTTTATATCGGAGCTTGTAAGAAGTAATCAGACAGACATACAGTGT
GTCCAAAAAAAAGCGGACACACTTTTATATAAGAAAATCCTCTTAATCTA
TGCTCAATGTCCTTATTCTCGATCATATTGGGAATTGATTGAACCCATTG
ATTGAACAGAGTATTGTAATCTTATTTCAAATTATCCTAAGCCCAGTTTA
GTTAATGTGTTATgaagattttactttatataaaaatttgtcttcTATTT
CTGGGACACACGATATCAATATGTTAGTAATCTCGTTGTTCTAAATTTCC
AAATGAGGAAGATTTCTCgattttttctcatttcctTTTCATTAAGACAA
TAGACTTTTAGTCCCTGTATACTTATCTATACCAACAAAAATGTAGTTCT
GACAAGTTCACAAAATGCCGGTCATTGCTGTGTACTTCTCTACTCTTCTG
TGGCAGAGAGTCAAATGTTTGAAAATCAATACGTCCattttaaaggggca
taaaagtagtaaaatgtaaacaatgtGCGAACCACGTGTGacattaaaat
cacgtgtccaaaacaattgaaacaatcaaaatcagccatttgtttttatt
ttttattttgacatgtgacatttgttttgatattgtATCCTGCTGCATAT
GGTTTGTTTGCAAATTTGGTCATTACTTTTGTGTCCCTTTAAGGGTTTGA
TTGTgtagccaatcaaaataaactTAACACAATACCAATAGGCTATTATT
TTGACATTtataattattatattattgtGTGTACATTATTATTGTTTATT
ATTCTTATCACTGTATAATCTTAGGTATTTTTTTACTATTATCATACTGA
AACTGAAAACTGCAAACAGATGGGCATTGtcacattttcaattataatta
ttatattGTATAGttctatctttttcattttctcttttttttcagttcca
aaaaaaagaagaatcatAAAACATTTTAgaattattatattattgtcatt
ataattatttctttaaacttttagcttaaaaaaatataattgccCCCCAA
TATGTTTAGTTTGGcactgtttaaaaaaaatgtaaaattttttgactaat
ttttagAAGGATATATGTCCAATTTATATTTTGGTTCTACTTTCCTCTAG
ACTTAGAGCTTTTATTGATGTTTattataaattgttttttcaacaTATGC
TGGACTCTTTCAAACCTAAAATTAGAATTTCTTGATATCGTCAATTGAGN

Coding sequence (CDS) from alignment at scaffold_443:308304..318753+

>TCONS_00065703 ID=TCONS_00065703|Name=TCONS_00065703|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_443:308304..318753+ (Clytia hemisphaerica)
TTTAAAAAAGGATCGATTTCAATAATACCTGACAAGGATatGCTTCATGG
CCACCCATACAGTAGCTTATCCAACCATTCCAGCTCCAATTCACCTTTAC
CGTCACCGGCGAGTCAAATATCAAGAGGACATCACGGACCGTTGACTGGA
TTCTCCAAAATCGTTGAAGGCACTATCAGTAGTATAGGAAATATTAATTT
GAGCAATTCAGCGCCGACGTATGAGAAAGCACCAGGATCTGGACGTCGAA
GCAGTAGTAGAGACAGTGATCACCATAGTTCATTTTTCGGTCATTCGCTT
GGTTCTGAACCACATACACCATCCAGGTCAATGTCAGCTTCGGCTCCTTC
ATTCTACCCTGGACCATTGCCAGACGAATCGGCACTGGACAGTGGCCTAT
TAGAAGCATTATCGACAGTAGACAATACGTTCGATTTCGATTTCCCGGAC
AATTCTTCCGTCAGCTCCTCCATTGGCGGGAGCACGGGCATCGGGGGCGG
TACCGGCTCACTGAGTGGCGGATTCAATAATAGTAGTTTATTAGGACAAT
TTTCAAATAACGGCTCCACAGAGCCAGTATCAATACCTGGGTCACACGAA
TCAAGGCACATGTCATTTAACTCACAGCAGTCACATTCACCGACCTCGCC
CAGTCTCCAACAACACAACAGTGGACCCAATAGTAGTTATTATATTAATC
AGaacGAATCTGACCTGTTTTCTTCATTCTCGTCTGGTTCGAAAAAGTCC
ATACTGAATTCAAGTCGTTTATCTGGATCAAGGGCAGGCTTTGTACGGAG
TCCCAAATCAAACCCGTTGAACTTATACGACATGATGTCCTCACCTAAAT
TTCAATCTCCCTCCCTAACGTCACCGCTCGCTTTCGGAAGCGGAAACCTG
AATTCGAGTAGCCTGGACGTACAACGACTAACAGACGAAGTCTTATCATT
ACGTAATAAGTTGTCGTCATGGGAGGAGTCGTGGAATCAGGCAAAAATGA
CGTGTGAAGCGTGGAAACGAGAGGCTAACGAACAAGCGGAGAAAGCCAAA
GCCGTGGATAGAGAAAGGATACAATACGGAATGAAATTAGGAGAAATGGA
GAATGAAATTCGAACGTTACGCCATGAGCTCGAGAATCGAAGTAGATTGG
GTAGCGTTGGAAGCAATAACAGCAACACAGCacatttattaaaaaatgtc
aaCGACTTGGAAAACCTCCCTGTACTAGAACTGAAACAATTATTTAATCA
ATTGAAACTAGATTTAGATAAAGTGGAAAAGGTAATTAGCAAGAAAGAAT
CTATGAAATGTACAATTTGTGAAGAGACTCCACGATGTGTTGTCACTTAT
CCATGCACGCACTGTGTGATGTGCGAAAAGTGTGCTGGCGGACAGTCAGA
ATGTCCATTCTGCAAACAGGCCATCACTCAACGAAACACCATTTTCATTC
CTGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041164XLOC_041164Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065703-proteinTCONS_00065703-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065703-exon-scaffold_443-1491911889:308304..308344TCONS_00065703-exon-scaffold_443-1491911889:308304..308344Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1510915933:308304..308344TCONS_00065703-exon-scaffold_443-1510915933:308304..308344Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1575043694:308304..308344TCONS_00065703-exon-scaffold_443-1575043694:308304..308344Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1491911889:308593..308829TCONS_00065703-exon-scaffold_443-1491911889:308593..308829Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1510915933:308593..308829TCONS_00065703-exon-scaffold_443-1510915933:308593..308829Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1575043694:308593..308829TCONS_00065703-exon-scaffold_443-1575043694:308593..308829Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1491911889:309099..309524TCONS_00065703-exon-scaffold_443-1491911889:309099..309524Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1510915933:309099..309524TCONS_00065703-exon-scaffold_443-1510915933:309099..309524Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1575043694:309099..309524TCONS_00065703-exon-scaffold_443-1575043694:309099..309524Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1491911889:314149..314217TCONS_00065703-exon-scaffold_443-1491911889:314149..314217Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1510915933:314149..314217TCONS_00065703-exon-scaffold_443-1510915933:314149..314217Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1575043694:314149..314217TCONS_00065703-exon-scaffold_443-1575043694:314149..314217Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1491911889:314812..315135TCONS_00065703-exon-scaffold_443-1491911889:314812..315135Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1510915933:314812..315135TCONS_00065703-exon-scaffold_443-1510915933:314812..315135Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1575043694:314812..315135TCONS_00065703-exon-scaffold_443-1575043694:314812..315135Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1491911889:315799..315984TCONS_00065703-exon-scaffold_443-1491911889:315799..315984Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1510915933:315799..315984TCONS_00065703-exon-scaffold_443-1510915933:315799..315984Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1575043694:315799..315984TCONS_00065703-exon-scaffold_443-1575043694:315799..315984Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1491911889:316513..316753TCONS_00065703-exon-scaffold_443-1491911889:316513..316753Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1510915933:316513..316753TCONS_00065703-exon-scaffold_443-1510915933:316513..316753Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1575043694:316513..316753TCONS_00065703-exon-scaffold_443-1575043694:316513..316753Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1491911889:318449..318753TCONS_00065703-exon-scaffold_443-1491911889:318449..318753Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1510915933:318449..318753TCONS_00065703-exon-scaffold_443-1510915933:318449..318753Clytia hemisphaericaexon
TCONS_00065703-exon-scaffold_443-1575043694:318449..318753TCONS_00065703-exon-scaffold_443-1575043694:318449..318753Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_443supercontigscaffold_443:308304..318753 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16088	0.601355	1.13313	0	8.99348	9.03783	7.14056	4.48996	7.55167	6.76427	8.81146	5.60377	6.46275	7.29933	4.68232	7.72474	4.0405	7.39198	4.05088	8.78922	2.65887	4.6761	0.374797	2.62949	5.54059	1.93581	0.0075962	0.0796296	2.01833	1.86567
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
Blast
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BLAST of TCONS_00065703 vs. Swiss-Prot (Human)
Match: UNK (RING finger protein unkempt homolog OS=Homo sapiens GN=UNK PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.665e-24
Identity = 72/199 (36.18%), Postives = 106/199 (53.27%), Query Frame = 3 
Query:  822 NLYDMMSSPKFQSPSLTSPLAFGSGNLNSSSLDVQRLTDEVLSLRNKLSSWEESWNQAKMTCEAWKREANEQAEKAKAVDRERIQYGMKLGEMENEIRTLRHELENRSRLGSVGSNNSNTAHLLKNVNDLENLPVLELKQLFNQLKLDLDKVEKVISKKESMKCTICEETPRCVVTYPCTHCVMCEKCAGGQSECPFCK 1418
            ++++  +S  F SP  TSP AF SG     + ++ RL  E+    + +  WEESW QAK  C+AWK+EA E  E+A A   E      +   +E +++ L+ ELE   RL     +       L   +DLE L +  L  L  QL+  L++V+K +   +S+KC  C+E  R V+  PC H  +CE CA G SECP C+
Sbjct:  620 SIWEHFASGSF-SPG-TSP-AFLSG---PGAAELARLRQELDEANSTIKQWEESWKQAKQACDAWKKEAEEAGERASAAGAECELAREQRDALEVQVKKLQEELE---RL-----HAGPEPQALPAFSDLEALSLSTLYSLQKQLRAHLEQVDKAVFHMQSVKCLKCQEQKRAVL--PCQHAALCELCAEG-SECPICQ 801
The following BLAST results are available for this feature:
BLAST of TCONS_00065703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UNK5.665e-2436.18RING finger protein unkempt homolog OS=Homo sapien... [more]
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