TCONS_00067229-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067229-protein
Unique NameTCONS_00067229-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067229-protein ID=TCONS_00067229-protein|Name=TCONS_00067229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MSPKISVDDRIASLYPFVNEAETPLPRSWSSQDKCSHIGLSQNNLRAHYK
GVGKTHKDAASARASYPIPAGCGLYYFEVKVISKGRDGYIGVGLCAHGVN
TSKLPGWEKDSYGYHADDGHSFCASAAGEAYGPTFTTGDIIGCGLNLINK
TCFYTKNGVNLGIAFKDLIPNLYPTIGLQTPGEIVDVNFGQQDFVFDIEE
MKKKLQASTLRIIENFPVSTDDGSWHATLQRIVSAYLVHHGYCATAETFA
KSTGQSIAEELSSIRNRQRIQRLILSGRISEAIDAIQTLYPGLLDQNSDL
FFKLKCRQFIEMVNGCDGEVKTYAHSPSRSLRNSPCASPSRSLSTNSNPP
SSLVRNSQQNNSNMDITPSTSSENAGGSAPPLATNGVSXY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041997XLOC_041997Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067229TCONS_00067229Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003877SPRY_dom
IPR006595CTLH_C
IPR006594LisH
IPR024964CTLH/CRA
IPR001870B30.2/SPRY
IPR013320ConA-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003877SPRY domainSMARTSM00449SPRY_3coord: 72..193
e-value: 1.2E-37
score: 141.1
IPR003877SPRY domainPFAMPF00622SPRYcoord: 75..192
e-value: 1.2E-23
score: 83.3
IPR006595CTLH, C-terminal LisH motifSMARTSM00668ctlhcoord: 263..320
e-value: 3.3E-14
score: 63.2
IPR006595CTLH, C-terminal LisH motifPROSITEPS50897CTLHcoord: 263..320
score: 13.551
IPR006594LIS1 homology motifSMARTSM00667Lishcoord: 225..257
e-value: 2.4E-5
score: 33.7
IPR006594LIS1 homology motifPFAMPF08513LisHcoord: 229..252
e-value: 9.4E-7
score: 28.5
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 225..257
score: 10.248
IPR024964CTLH/CRA C-terminal to LisH motif domainPFAMPF10607CLTHcoord: 263..321
e-value: 3.9E-18
score: 65.6
IPR001870B30.2/SPRY domainPROSITEPS50188B302_SPRYcoord: 1..194
score: 21.125
NoneNo IPR availableCDDcd12909SPRY_RanBP9_10coord: 40..191
e-value: 4.47736E-100
score: 295.622
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 20..206

Blast
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BLAST of TCONS_00067229-protein vs. Swiss-Prot (Human)
Match: RBP10 (Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 PE=1 SV=1)

HSP 1 Score: 467.233 bits (1201), Expect = 1.441e-161
Identity = 216/348 (62.07%), Postives = 264/348 (75.86%), Query Frame = 0 
Query:   10 RIASLYPFVNEAETPLPRSWSSQDKCSHIGLSQNNLRAHYKGVGKTHKDAASARASYPIPAGCGLYYFEVKVISKGRDGYIGVGLCAHGVNTSKLPGWEKDSYGYHADDGHSFCASAAGEAYGPTFTTGDIIGCGLNLINKTCFYTKNGVNLGIAFKDLIPNLYPTIGLQTPGEIVDVNFGQQDFVFDIEEMKKKLQASTLRIIENFPVSTDDGSWHATLQRIVSAYLVHHGYCATAETFAKSTGQSIAEELSSIRNRQRIQRLILSGRISEAIDAIQTLYPGLLDQNSDLFFKLKCRQFIEMVNGCDGEVKTYAHSPSRSLRNSPCASPSRSLSTNSNPPSSLVRNS 357
            R+  LYP VN+ ETPLPRSWS +DK ++IGLSQ NLR HYKG GK HKDAAS RA++PIPA CG+YYFEVK++SKGRDGY+G+GL A GVN ++LPGW+K SYGYH DDGHSFC+S  G+ YGPTFTTGD+IGC +NLIN TCFYTKNG +LGIAF DL  NLYPT+GLQTPGEIVD NFGQQ F+FDIE+  ++ +A     +  FP+S   G W A LQ +VS+YLVHHGYCATA  FA+ T   I EE +SI+NRQ+IQ+L+L GR+ EAI+  Q  YPGLL+ N +L F LKCRQF+EMVNG D EV++ +   SRS ++      S SLS    P SS + N+
Sbjct:   38 RLQRLYPAVNQQETPLPRSWSPKDKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLS---SRSPKSQDSYPGSPSLSPRHGPSSSHMHNT 382
The following BLAST results are available for this feature:
BLAST of TCONS_00067229-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBP101.441e-16162.07Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 ... [more]
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