TCONS_00067229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067229
Unique NameTCONS_00067229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2699

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067229 ID=TCONS_00067229|Name=TCONS_00067229|organism=Clytia hemisphaerica|type=transcript|length=2699bp
ttctagtAAAATCAAGAGAAATTAAGAGAAATAATGAGCCCAAAAATTTC
AGTAGACGATCGTATTGCATCCTTGTATCCCTTTGTTAATGAAGCAGAAA
CACCTTTACCACGATCATGGAGCAGTCAGGATAAATGTAGCCATATTGGA
TTATCGCAAAATAATCTGAGGGCCCACTATAAAGGGGTTGGTAAAACACA
CAAAGATGCAGCCTCAGCAAGAGCTTCATACCCTATTCCTGCTGGTTGTG
GCCTCTATTATTTTGAAGTCAAAGTTATCAGCAAAGGAAGAGACGGGTAT
ATTGGTGTTGGTCTGTGTGCACATGGAGTCAATACGAGCAAACTACCAGG
ATGGGAAAAAGATTCATACGGTTACCATGCAGACGATGGCCATTCATTCT
GCGCATCAGCTGCTGGTGAAGCTTATGGGCCAACATTCACAACAGGAGAT
ATCATTGGATGTGGTTTGAATTTGATTAACAAGACTTGTTTTTATACCAA
GAATGGTGTCAACCTTGGAATAGCATTCAAAGATCTTATTccaaatctgt
ATCCAACGATAGGTCTACAAACACCAGGAGAAATAGTGGATGTTAATTTT
GGACAacaagattttgtttttgatattgaGGAAATGAAAAAGAAATTACA
AGCTTCAACTTTGAGGATTATCGAAAACTTTCCGGTTAGTACTGATGATG
GCAGTTGGCATGCAACATTGCAAAGGATTGTATCAGCATATCTGGTACAT
CATGGATATTGTGCAACTGCTGAAACGTTTGCCAAAAGTACTGGACAATC
CATCGCTGAAGAACTCTCATCTATACGAAACAGACAACGTATTCAACGCC
TCATTCTGTCTGGAAGAATCAGTGAAGCAATTGATGCTATTCAAACCCTA
TACCCTGGCCTATTGGACCAAAACTCTGatctatttttcaaattgaaatg
tCGTCAATTCATTGAAATGGTCAACGGTTGCGACGGAGAAGTCAAAACGT
ACGCGCACAGCCCTTCACGTAGCCTACGTAACAGCCCGTGTGCTAGTCCT
TCGCGTAGCCTGTCTACCAACTCTAATCCACCATCCTCTCTTGTGCGGAA
CTCACAACAAAATAATTCGAATATGGACATAACGCCATCTACTAGTAGTG
AAAATGCGGGTGGCTCAGCCCCTCCCTTAGCAACCAATGGCGTTTCCNTC
TACTAGTAGTGAAAGTGCCGGTGGTTCAGCTCCTACCTTAGCAACCAATG
GCGTTTCTAACAACACAACAACGCAGCAGCAATATCAAAATGGTGCAGAA
GAGGTGACAGATATGGTAGTTGACGATTATGCAGGAAATTGTCATTGCCC
ATCTACCTCAACGACAGATGACGCTTTTGCCGGCACCGGCGATGATCTTA
TGGATACCAGTGATGACGTAACGTCCAATACACATCAAACTAACACTAGC
AATAAGCCAGGATTGAATACAATTTCTGTTATAACTAACTCTTCCAAAGC
AATAGACACGGGTCCATCAATGCGGCAATTGTGCGGTGGCAACATTTACG
CCATCGAGAAATTGTTATCTTTCGGTAAAGAGTTACGAACGTTGTACAAA
GAAAGCAAACGAGAAGCTGAAACGAAAAATAACGAAGCCAACGAAAAACT
CATGAAGGAGGCATTCAGCTTATTGGCATACAACAATCCCCGTGAAAGTC
CAGTCGGATACCTTTTAGAACCGGAACAGCGAGAGGAGATTTGTTCAGCC
GTCAATAGCTCCATATTAGAAGCACACAAATTACCAGGGCAACCAGCCCT
CGAACTCTCATTGGCTCAAATTGATAGTTGTTTAAAGAtgatgggtaaaa
atggtctcGGCGCATGCGCTATGGTCAATTTAAAGAACTTTTACTGTGAT
AGTGACACTTACTCATAGTTTGGAGAATAGtctttaagtttgaaatttca
tttttttagaattgaCTTTTCTTCTTCTCTTTTCCTTTgcaccatagtga
atttttctcaCAGTTTTTGCACCTTTGATTCGATTGTAAAGAGGTATTAC
CTTGGGTTTTAATTTAGGTTAAACTATACTATTACAAAGCTTGCATTTGA
ATCATTGTTTgcgcaaaatcttaaaaacaatctTGGATGAAGATGCTTGG
GTCAAATCAATACATATTTTTACCATTGcgcaaaatcctcaaaacttccA
TCATTTTACTTTTTCGTTGGATTGCACttttaaatatctttcatttggcA
CTTTTCGATACTCTAAACTGTAAATTTTATTTATGAACACATATTTTTAG
ATTCTTGTTATACTTGACAACCATCAGAGTTACCAGGGGCTTGCATACAT
AAGCGAATAATATTCTCGTCAATTCAATTCAgtcctttcaaaaaaatttg
gattgTTCTTGACACAACTTTTGAAAACTTCGAAGCAGAACTTCATGAAT
TGATGGTTGTACTGTTAATCCAATTCCTCTTGAACCATCTGGAATGTTAC
ATAATTCGAGCTTTTGCCTCTGGATGGCCCCAGTGCCTCCTCGAATCTCT
GCTGTCTCAGAATTATTTGcctttgaatgtttttaaaattattatagTTA
GTTattttttagtttaatgtaTGATATATACACATTTGAGTAAATCTACA
ACAAAAAGCTGTTGtggaaaatataaaattctttTATACAAAGTTGGAC
Run BLAST on NCBI

protein sequence of TCONS_00067229-protein

>TCONS_00067229-protein ID=TCONS_00067229-protein|Name=TCONS_00067229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MSPKISVDDRIASLYPFVNEAETPLPRSWSSQDKCSHIGLSQNNLRAHYK
GVGKTHKDAASARASYPIPAGCGLYYFEVKVISKGRDGYIGVGLCAHGVN
TSKLPGWEKDSYGYHADDGHSFCASAAGEAYGPTFTTGDIIGCGLNLINK
TCFYTKNGVNLGIAFKDLIPNLYPTIGLQTPGEIVDVNFGQQDFVFDIEE
MKKKLQASTLRIIENFPVSTDDGSWHATLQRIVSAYLVHHGYCATAETFA
KSTGQSIAEELSSIRNRQRIQRLILSGRISEAIDAIQTLYPGLLDQNSDL
FFKLKCRQFIEMVNGCDGEVKTYAHSPSRSLRNSPCASPSRSLSTNSNPP
SSLVRNSQQNNSNMDITPSTSSENAGGSAPPLATNGVSXY
Run BLAST on NCBI

transcript from alignment at scaffold_466:405158..415943-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067229 ID=TCONS_00067229|Name=TCONS_00067229|organism=Clytia hemisphaerica|type=transcript|length=10786bp|location=Sequence derived from alignment at scaffold_466:405158..415943- (Clytia hemisphaerica)
TTCTAGTAAAATCAAGAGAAATTAAGAGAAATAATGAGCCCAAAAATTTC
AGTAGACGATCGTATTGCATCCTTGTATCCCTTTGTTAATGAAGCAGAAA
CACCTTTACCACGATCATGGAGCAGTCAGGATAAATGTAGCCATATTGGA
TTATCGCAAAATAATCTGAGGGCCCACTATAAAGGTAAGCTATAATTTCA
ACATCCTGAAATCAATGATAAACCAATATATATCTTTTTTATATTCTAAA
ATTGATAGCTTTCAGGAAACTTTGTCAACTCATCAGCGTCATCAAAGACA
CTATGAAATTCACCAAATGGAAATGGTTTTCAGGAAATCTTGTGGATTGA
AAAAGTTTCTTTCAAATTGACTGCAACAATATTCCTTTTATACCATTTTA
GGTGACCTTGTAAAGGCTTATATTGTATCCGTAAACTAACTCATAACTCA
ATTATATTTACATCATAATAACAACTAGCCGTATGCGCAGCGTTGCACGC
TGTTAAAGAGCATTTGAATAAGAATTTTTCAAAAGCAAATATTATATTTG
GGAAGAAGGTTGATTTTAACCCATCCAGCTCCAATGTTCCTGTATAGAAA
ATAGTATCTTGGCGTCTCAAAGTTAGTCTAGTGGTAGGAAAACTGCATGA
GGTGTAAAAAGATGATGGTTCAACGCCATGAAGAGGAAGCTTTGTAGAGC
TTTGTTAGAATTTCAAAAAAATTTTACTGAATGTTCCTACTGTTGGTTTT
AGGGGTTGGTAAAACACACAAAGATGCAGCCTCAGCAAGAGCTTCATACC
CTATTCCTGCTGGTTGTGGCCTCTATTATTTTGAAGTCAAAGTTATCAGC
AAAGGAAGAGACGGGTATATATGATTTTTTATTATAATTTTTAGTTTTTA
TCAAAGCCAATTTTTTATATATGTTAGTTTGCATTTTTATTCATTAGGCT
ACAAGCATCTCCTCTGATATGTTTATAGGGGATGCTAATCGTGTATAAGA
TTCCTGTCGGAGTGTTGCCCCAAAGTTGGGGTACAACCTGTTTAAAACTT
CTTACAAAGGCTTGGAAATCCAACATTTTTATTAATCTCTAGCCATTCAA
AATTTCAATACGAATTTAATGAAATTTTAAGATCTCTCATGTAAAACTTA
CTAAAAGCTAATCAAGTTTCCAAATTTCAAAAATGGGAACTATACAGATG
AGATGGAGTTTTTATAAGATACTTCAATAATTGGTCATTTGAAGTAATCA
AAATGCCGCGTTCTTATCAAACAAGAGCTTGTAAAAACTCCACCTCATCC
CGAATTATATCAATCATATCAGAGGGAATGTGTGCAACATATTTATTCAT
TATCCATCGGGGGAAATTTGTAAAATCGCTCGATTTTTTTAGTCAAAGCA
CTTGTTATACATTTTTGGAAAGCTAAGGGGTAGGGGAATCAAAATAACTT
GGGTGCCAATTTTGTTTCGAACACTTTGGTGTGATTTTCGGACAAATACG
ACGGTCTCAGGCAAAAATAATAGGGTGAAAATTTAATGAAAATTTTAGCT
TCAGAAAACGGAGACCTGTTGTATATTTTTGGAAAGCTCTCAGAAAATTA
AGATTAGTGATGTATTGCGAGTATAGGTAATTACTTTATCTAACTCGAGA
TATTAATCCTTAAAAACAGTGTTTTTCAGTGTTTTTCAGCCAGAAACAGC
TGTTTTGTCCAGTTTTTGCGCTTTCGGAAGCTCAATATCTCGAGTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAGCTCAATATCTCGAGTTAGGTACTGAAATCACC
TATACTCGCAATATATCACTAATCTTAATTTTTTGAGAGCTTTCCAAAAA
TATACAATAGGTCTCTGTTTTCTCAAGCTGAAATTTTCATTAATTTTTCA
CCCTATGATTTTTGCCCGAGACTGTCGTATTTGTCCGAAAATCACACCAA
AGTGTCCGAAACAAAATTGGCACCCAAGTTATTTTGATTCCCCTACCCCT
TAGCTTTCCAAAAATGTATAACAAGTGCTTTGACTAAAAAAATCGAGCGA
CCTCAAAAAAACGAACAAATTTCCCCCTACTAATCAGTGTCAATAGATAT
TATTATTTATTTATTGTTGACATTGCTCTTTTTACTATGAAATTATTCAA
AACAAATTTTAATTAGGAGTCACAACTAGAGCCAGACTTTGTCAGATGGA
AGACTTTTTTGACCTCTAAGATCGATTTTTTAAAAACATTCAACTATCAT
TAGAAAATTTTTTCGTTTCTTTAGGTATATTGGTGTTGGTCTGTGTGCAC
ATGGAGTCAATACGAGCAAACTACCAGGTATCATTATAGATGGGTGTTCT
GTACTTAAATATTGTTTGTCAGCCTCATTAGAATCTCATTCAACTCTTGT
AAAACATGTTCAGATAAATACAAATTTAGTTATCTAATCTTTTAAGGACC
ATTGAAATAAGGATTTATCTAATTTAAGACAAAAAGACTAATTTATGTAC
TCTTTACTCAAGACTTTGCTCCTCGCATATTCCCATTCTGTAATGGGCTG
TTCCTATACAGGGGGAGGGCTGGACGAACCTTTTCAGGCCAAAAATAATT
CTTGAAAATGTGTGGATACCCATGGAAAATAGCAAAATTAGCAATTACCC
TTGGAGAAATTTATTTTCATACCTTAAAGGACGAACAAAAATAATTTTTT
GCCACCTGGAAGTTTTAGAATAATATTTACCCCCCTGGAAAAATAAAAAA
ACCTTGCCTTAGAGCCCCTGGAAATTCTTCCTTTGCTTAGACACCTGAAA
ATGTTTGTCCAGCCCCTATGGAGATAAAATGGAATGACCCAATGTACAGC
AATTACGGAATTCATAGAAAAAAGACAATAACTCTTTTCTACAAAATTTT
TGTCTAATTTTGATCTTTCCGCCCAGATTCACAAAGTCAGTTGCAACACT
TACAGAAACATAATGAGGCTCACTATTGGCTATTTTCGGATTGTGACTAT
TGGAAAGTCATCATTTATTTGCAAATTGAAAATATTTTTTACTCTTTGTA
ATTGCAGGATGGGAAAAAGATTCATACGGTTACCATGCAGACGATGGCCA
TTCATTCTGCGCATCAGCTGCTGGTGAAGCTTATGGGCCAACATTCACAA
CAGGAGATATCATTGGATGTGGTTTGAATTTGATTAACAAGACTTGTTTT
TATACCAAGAATGGTGTCAACCTTGGAATAGCATTCAAAGATCTTATTGT
AAGGGCTTTATATCATTATGTGGAATTTTTGCTGAAATGGTTTTAAACCA
GGGATGAGTGTAATTTCCAAATAGATTACGTACATTACAATAAGCAAAAA
CTACTTAAAAAAGCTATTGATTAATAAAAAAATAGAATCTTTAGGAAGCT
TATAAGCTAATTTTTTTTTGATTTTTTCCTAGTTTTGAAAAGTAAATAGG
GCAGGGTTAAAGGTTGGCAAAGGTTTTGAATCTGCTCTTATCCATAGGAA
ATGATGAAAATAAATGAAAAGAATGATCGAATTTCATTAGGAATTTCAGT
TTTTATTTAGACTGTCTGATGGAAATTGGGGATAACATTACAGAATGGCA
GGATTTGTTACCCCCTGAAACCCCTAGGCATATCTTCTTGTTCAGATCAA
GTATTCTTAATATGTCTTAATTGTATTCGTTGTGATTTTATTACTTTTTA
TGACATATTTTCTATTTTCAGCCAAATCTGTATCCAACGATAGGTCTACA
AACACCAGGAGAAATAGTGGATGTTAATTTTGGACAACAAGATTTTGTTT
TTGATATTGAGGAAATGAAAAAGGTTTATCATCAAATGATTTTCTGAGTA
TTCCTGGAGTATTTTCATCTCGTGTTTTATTTTAATGAGTGCCTGTCCTG
AAGTCTCATTTAGAAATTTGAAAAATTTTTTATCAGAGTATGTGTACAGT
TTATGCTCTCTAACTCGACATCCTACTATTCAATACATTCCATGATCCGA
TAATATTGTAGTCAAATACCGTCAACAAGAAATTCTCATAAACGACAAGG
GGATAGGTAGAGCCATTTGATATGCTCCCTTATTCGATGAAAAATCCTAT
TCCCCTTGTAAATCGACAAGCACACGCTGAACGAACTCAAACACATTTTA
TTTGAAAACTCCAAACCAACTGTTCGGTGTGGGAGGTGTTCCTCCTACAC
TGTTTTGTTTGAAGAATCTCAAATGACCAGCACACAATAACAACAGACCC
TCTACGAAGATGAACTTTTAAAATTTCGTTTGATCGGGTCTGTTTACTGA
TAAACCAAATAATTTCCATTCTCTTTAACTAGAAATTACAAGCTTCAACT
TTGAGGATTATCGAAAACTTTCCGGTTAGTACTGATGATGGCAGTTGGCA
TGCAACATTGCAAAGGTTTGTTTGTCTGTGTGACTGTTTTTAATCTTATG
GAAAGAATAATTTATAAGCCTAACGCTTACGATTTTTTCGTCATTACATC
TGCGAGTTTTTTCTGGTTTGGTAAAGTTAAGTAACGGAAATTTTCTACGA
TTGCTGATGCGAAAGCGTTCGAGTTTGAAAAAGCGATTCTTTTCGCAAAT
AGAATATTTTCTTCTCCATCATTATAAATAGGGTAAGTTAAGTAAAACCT
GAAAAGCCTCCATGCTCTAACATTGGGTTAAATCTGGTTTCATTTATTTT
CATAGGATTGTATCAGCATATCTGGTACATCATGGATATTGTGCAACTGC
TGAAACGTTTGCCAAAAGTACTGGACAATCCATCGCTGAAGAACTCTCAT
CTATACGAAACAGACAACGTAAGTTTTGAAAATTGAAAATCAGTTAAGCC
ACTATGCCCCTTTACCAACTAATTTAAGATATTATATTTGCATACTATTT
AGCCTGCGTTTGATCAAGTTTCTTGGTTTGATAGCATCAAATGCGATGGA
AATGCATCAAAGTCGGATATTTCTTGAATGTTTCTTCTCATACAGATTAA
GGGCCTAAGGGTTGATGGGTATACCCCTCACATTCAATAAGTAACGACAA
GGTTTCCCTCTTTGGCTATCTTCAGTGTTGCAACTTTTCTTATCTTCAGT
GTTGCAACTTTTCCGTCTGTAGACGGATATCCGTCCAGTTGAGATACAAA
TATATCATTTCCGTCTTACCAGTAAGAGGGTTTTTGGTTCAAATCTAATT
CAGACCATCTAATCCTAAGGTTTTCGTCCATATTCAGGGTATCTACGGGA
CCTTGAAAACCTTGAAAACCTTGAAAACCTTGAAAATGAACCACCCAACC
TTGAAAACCTTGAAAACTAACAATTTTCTGGGAAAAACCTTGAAAACCTT
GAAAAATTGTTAAAAACCTTGAAAAGCACTTCTTCCTATTCATCATTTTT
ATCATACAATCTTTTCAATAGGGCAGTAGCTGAGTAACTCTTATAGGTTC
AGATTAGTTTGGAGTTTGAATGCTCTTATTTTTGAGTGGTAGGCTTTTTT
CATTCATTACCGTATACTATATTATGTTGGTTACTTTCATGAACATATAA
AGGACTGGACCTCTATCTCCTTTGTATTTTTGTAATAAGCACTGTTAGCT
TCGTTGCTGCCTCTTAAAAAAACATAAAATAAACAATAGATCTTGAGGGA
ATACCTTGCTAACAACGTCCAAAACTTGGACTAATATTTCTAAATTTTGA
CTCAAAAGTATGGAATAATTTCAGATGGTTTGGGATTCAAACTATGACAC
AGGCTCTCAACTTTGACATACTATTTTTTCAAGTCATTAAAAAAAAGTGA
TTCAAAATTATACACGCAGTTGAAATTCTGAATTTTAGCGTTGAAAAATG
TTGCATATATTGCAAACTTATGAAAAATTTCATCAAATTTCGCCGGCTCA
ATACTCTAAAAAATTAAATTCGCTAGTCTCGAAAATCTATTCGCTGACCG
ATGAAATTTTGCAGCTAACTTATTTCTATCCAGTCATTCGAAAAGTAAGA
ATAACTAAGTACGTTCCTAAACTGATTGTCATGAGGAAATTTCCAAAAAA
CCGCCTGCGGCGCTAAACCTTTATAACATTTAAAGAATATTCTATATCCC
CCTGTTTCTTTTGCGATTCTGTCGCAACGAATGCAACATATTCTCATTAG
CTGAGTTTTTTTTACAAATTTTCATTCTGTTTGCATGAGCCCTAAGAAAT
CGGGGGCGTCTTGGAATAATGACCGTTCATCAATAAAATTTCGAGGATTC
CTTAAAGCAATTCTTTTTGCAATTCTTTTTGCAATTGATTTTTGTAGAAA
AAAAAAATCTAAAACAAGGCGTTTTTTAGCCATTTTAAAGAGCCAAAATG
TAAATTTTCTTGGTTGCGCCTCCTCGGTCACTGTAAACATTTGGTGGGAG
CTGGAGTAAGAATTTCTTTTTGTGGTATTGTTCTCGAGAGGGAGATAGGA
ATTTAACTATGGAAATAATTCATCGGTCACCAAAAGCGAATAAATCCTCT
TTTTTTCTTTCTTCTACCACTCTGAAAAAAAAAATCCCCTGTAGAGAGCC
ATGTCAACTGAATATCAAAAAACCTTGAAAAGTGCCAAAATTTTTGCAAA
AAAACCTTGAAAAACCACTTAAAAATGACCAAAAAAACCTTGAAAACCTT
GAAAATCCCCAAAAAAAATTCGTAGACACCCTGATATTCACAAAACCTAG
TTGCAACATTGTATCTTGATATAAGTCAATTTTTTAACGGGAACATCCGA
AAAAAAGCCGGGATTAGACTCTTTTATGTTATTAAAAATAGAAACACAGT
GTTCAGAGTCCGGCAAATACAAAGTCATCTTGACTTACGCATATCGAGAA
TACCTAAATGAACTATTTATTGAACAGGTATTCAACGCCTCATTCTGTCT
GGAAGAATCAGTGAAGCAATTGATGCTATTCAAACCCTATACCCTGGCCT
ATTGGACCAAAACTCTGATCTATTTTTCAAATTGAAATGTCGTCAATTCA
TTGAAATGGTCAACGGTTGCGACGGAGAAGTCAAAACGTACGCGCACAGC
CCTTCACGTAGCCTACGTAACAGCCCGTGTGCTAGTCCTTCGCGTAGCCT
GTCTACCAACTCTAATCCACCATCCTCTCTTGTGCGGAACTCACAACAAA
ATAATTCGAATATGGACATAACGCCATCTACTAGTAGTGAAAATGCGGGT
GGCTCAGCCCCTCCCTTAGCAACCAATGGCGTTTCCNTCTACTAGTAGTG
AAAGTGCCGGTGGTTCAGCTCCTACCTTAGCAACCAATGGCGTTTCTAAC
AACACAACAACGCAGCAGCAATATCAAAATGGTGCAGAAGAGGTGACAGA
TATGGTAGTTGACGATTATGCAGGTAAGTATTTAGCTGTTCAAATAACTA
GAAATAAATTATCTAGTGATTATCTAGGTAGAAAGCTTCCTCCCAGCCTC
ACATTTTATTCGTCTCAACTTCCGGGTGCCTTGTCTAATTTTGCGGGAAC
TAATTTTTGCGTTTTTGGGTGTCTACCGCGAAAATCAATTCTGCACAATG
TAATTTATACTTAAATTCCTGAAAAAACCTCTAGGAATATTAAAGAATTT
CGGCAAAAAGTGGGTGTCAACTGCGAAAATTAGTTCCGCAAAATGCACCA
ATTTAGTACCCTCACACCTCGAAAATAAGTTCCAATGTTCATACATATTT
TTATATTTATTTCAAAATATTTCAACCTTTGGGTTCTCATAAACCTTTCA
AATAAATATTTTCCATCATTTAAAAAGACCTTTATTGTCTTGCTTCAGGA
AATTGTCATTGCCCATCTACCTCAACGACAGATGACGCTTTTGCCGGCAC
CGGCGATGATCTTATGGATACCAGTGATGACGTAACGTCCAATACACATC
AAACTAACACTAGCAATAAGCCAGGATTGAATACAATTTCTGTTATAACT
AACTCTTCCAAAGGTATGTTAGAATTGATTTGGTATGTACTACTAAATGT
GCAAGTTTCTCATAATCATTACTTACTTCAGAAAGATTTTCTTAAATTTA
ATTAATATAATGTTAAGACTAGTTATTAGGATTTTCTGATTTGATTTCTG
ATTCCTATTAAAGAAAGATTTAAATGTTTAAGTACTAAAGAATAATAATA
AAAAATTTAATAATAGAGGCATAAACCAGGCAAAAACCAGGCATATAACG
GCCATTCCAGAGGAAGGGGTACGTTACGTCACGCTCATATTTTGACTGGA
TACCGCCAGTAGGGACCTAGGAGCGCCGTGACCCATGCACCATTTGAAAA
CACCCATACAGCGGTTCATTCCGGCATAGACTCCAATAGTTGTCAAAAAT
TTCCTGGAATGACCCATAACTGAGCTGAGCTTTAAGAATATTCTGTGCCT
TAACAAGGATCAGCTATTAATTTACTTAAGAAAAATTATCTATATCATAT
TACAAAACCATCTTTTCTTTCATTCAGCAATAGACACGGGTCCATCAATG
CGGCAATTGTGCGGTGGCAACATTTACGCCATCGAGAAATTGTTATCTTT
CGGTAAAGAGTTACGAACGTTGTACAAAGAAAGCAAACGAGAAGCTGAAA
CGAAAAATAACGAAGCCAACGAAAAACTCATGAAGGTTTGTCTCCCTTGA
ATACACTACATCTAAGACTTAACCTTTAAGACTATGTGCTGACGTTACGG
TTTCGTATTGTCCGGTATGATTTCTGTTACGGATTGAGAGTGTTCATATT
GGTTTCGGAGCGAGAAAACAGAGCAGTTCTGTTCCGATAAGAATATCGGA
ACGATACGGAACCGTAACGTCTGAACATGGTCTAAAAGCGTGAGGAGGCT
AGGTTCCAGTTTATCAGAAAGGATTGACGTCAAAAAATTGTTGTCGTTGC
GTTAACATTAGCATATCTATTTTGAAATCAAAAGTAAAGTAAAAAGTATC
CCATTTTATTAACAGCGATTTCTAAAATTCAAAATAGAAGAACAAATGAA
TAAAAATAAACATTTTGAAAGACGACGAATTTTGACGTCATTTCCATGTA
AATTCGTTACCAGTCTCCTCAGGAGCCAACCGCAGTCAAGGGTGTTGACA
GGTGTATTCACGCAGATCAATTCTTCTTTTAAATGCATTGTGCTGTTAGA
AATTATCGGATATCCTTCTTCCGCGTTAGCCGTAAATGTACATCATTTTT
TCAAAAGAGTCTTCAAGCCAGGATAGACAGTGACAAAAGAACACTTGGGC
GATGAAATGTGTAGATTTGGCCACTATGTACAGAACTTCCTTTGCAATTT
TTTTTAAAGAAAGGCTTCCTGTTTATTACTATTGTTCATTGTTTTAACAT
ATTTTCAGGAGGCATTCAGCTTATTGGCATACAACAATCCCCGTGAAAGT
CCAGTCGGATACCTTTTAGAACCGGAACAGCGAGAGGAGATTTGTTCAGC
CGTCAATAGCTCCATATTAGGTATGCGATTTAGCTTTTTTTACTTCCTCT
TTTTTTACTTCCTGTTTTATGCATAAACACCCATACATGTTTTGACGACC
GTTGTGAATAGCCGCGACGACTAAAATGATAATGAAAGTATTACTGAATT
TATATATAAATCTTCCAAAGCGATGTCCTTATTAGGCCACTGGAATCTTG
TGTGAAATCTCATTAAAATACATTTTCGTGTCATTTCTTGTAAAGTGACT
TTTCAAGCAAAAGAAGATGGGTCTTTCCAATTTTTCATTTATTTTTTCAT
TTGTAGAAGCACACAAATTACCAGGGCAACCAGCCCTCGAACTCTCATTG
GCTCAAATTGATAGTTGTTTAAAGATGATGGGTAAAAATGGTCTCGGCGC
ATGCGCTATGGTCAATTTAAAGAACTTTTACTGTGATAGTGACACTTACT
CATAGTTTGGAGAATAGTCTTTAAGTTTGAAATTTCATTTTTTTAGAATT
GACTTTTCTTCTTCTCTTTTCCTTTGCACCATAGTGAATTTTTCTCACAG
TTTTTGCACCTTTGATTCGATTGTAAAGAGGTATTACCTTGGGTTTTAAT
TTAGGTTAAACTATACTATTACAAAGCTTGCATTTGAATCATTGTTTGCG
CAAAATCTTAAAAACAATCTTGGATGAAGATGCTTGGGTCAAATCAATAC
ATATTTTTACCATTGCGCAAAATCCTCAAAACTTCCATCATTTTACTTTT
TCGTTGGATTGCACTTTTAAATATCTTTCATTTGGCACTTTTCGATACTC
TAAACTGTAAATTTTATTTATGAACACATATTTTTAGATTCTTGTTATAC
TTGACAACCATCAGAGTTACCAGGGGCTTGCATACATAAGCGAATAATAT
TCTCGTCAATTCAATTCAGTCCTTTCAAAAAAATTTGGATTGTTCTTGAC
ACAACTTTTGAAAACTTCGAAGCAGAACTTCATGAATTGATGGTTGTACT
GTTAATCCAATTCCTCTTGAACCATCTGGAATGTTACATAATTCGAGCTT
TTGCCTCTGGATGGCCCCAGTGCCTCCTCGAATCTCTGCTGTCTCAGAAT
TATTTGCCTTTGAATGTTTTTAAAATTATTATAGTTAGTTATTTTTTAGT
TTAATGTATGATATATACACATTTGAGTAAATCTACAACAAAAAGCTGTT
GTGGAAAATATAAAATTCTTTTATACAAAGTTGGAC

Coding sequence (CDS) from alignment at scaffold_466:405158..415943-

>TCONS_00067229 ID=TCONS_00067229|Name=TCONS_00067229|organism=Clytia hemisphaerica|type=CDS|length=1173bp|location=Sequence derived from alignment at scaffold_466:405158..415943- (Clytia hemisphaerica)
ATGAGCCCAAAAATTTCAGTAGACGATCGTATTGCATCCTTGTATCCCTT
TGTTAATGAAGCAGAAACACCTTTACCACGATCATGGAGCAGTCAGGATA
AATGTAGCCATATTGGATTATCGCAAAATAATCTGAGGGCCCACTATAAA
GGGGTTGGTAAAACACACAAAGATGCAGCCTCAGCAAGAGCTTCATACCC
TATTCCTGCTGGTTGTGGCCTCTATTATTTTGAAGTCAAAGTTATCAGCA
AAGGAAGAGACGGGTATATTGGTGTTGGTCTGTGTGCACATGGAGTCAAT
ACGAGCAAACTACCAGGATGGGAAAAAGATTCATACGGTTACCATGCAGA
CGATGGCCATTCATTCTGCGCATCAGCTGCTGGTGAAGCTTATGGGCCAA
CATTCACAACAGGAGATATCATTGGATGTGGTTTGAATTTGATTAACAAG
ACTTGTTTTTATACCAAGAATGGTGTCAACCTTGGAATAGCATTCAAAGA
TCTTATTCCAAATCTGTATCCAACGATAGGTCTACAAACACCAGGAGAAA
TAGTGGATGTTAATTTTGGACAACAAGATTTTGTTTTTGATATTGAGGAA
ATGAAAAAGAAATTACAAGCTTCAACTTTGAGGATTATCGAAAACTTTCC
GGTTAGTACTGATGATGGCAGTTGGCATGCAACATTGCAAAGGATTGTAT
CAGCATATCTGGTACATCATGGATATTGTGCAACTGCTGAAACGTTTGCC
AAAAGTACTGGACAATCCATCGCTGAAGAACTCTCATCTATACGAAACAG
ACAACGTATTCAACGCCTCATTCTGTCTGGAAGAATCAGTGAAGCAATTG
ATGCTATTCAAACCCTATACCCTGGCCTATTGGACCAAAACTCTGATCTA
TTTTTCAAATTGAAATGTCGTCAATTCATTGAAATGGTCAACGGTTGCGA
CGGAGAAGTCAAAACGTACGCGCACAGCCCTTCACGTAGCCTACGTAACA
GCCCGTGTGCTAGTCCTTCGCGTAGCCTGTCTACCAACTCTAATCCACCA
TCCTCTCTTGTGCGGAACTCACAACAAAATAATTCGAATATGGACATAAC
GCCATCTACTAGTAGTGAAAATGCGGGTGGCTCAGCCCCTCCCTTAGCAA
CCAATGGCGTTTCCNTCTACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041997XLOC_041997Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067229-exon-scaffold_466-1575043694:415760..415943TCONS_00067229-exon-scaffold_466-1575043694:415760..415943Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1575043694:415080..415191TCONS_00067229-exon-scaffold_466-1575043694:415080..415191Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1575043694:413517..413569TCONS_00067229-exon-scaffold_466-1575043694:413517..413569Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1575043694:412596..412786TCONS_00067229-exon-scaffold_466-1575043694:412596..412786Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1575043694:412021..412122TCONS_00067229-exon-scaffold_466-1575043694:412021..412122Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1575043694:411429..411511TCONS_00067229-exon-scaffold_466-1575043694:411429..411511Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1575043694:411026..411138TCONS_00067229-exon-scaffold_466-1575043694:411026..411138Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1575043694:408471..408966TCONS_00067229-exon-scaffold_466-1575043694:408471..408966Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1575043694:407881..408045TCONS_00067229-exon-scaffold_466-1575043694:407881..408045Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1575043694:407209..407366TCONS_00067229-exon-scaffold_466-1575043694:407209..407366Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1575043694:406374..406485TCONS_00067229-exon-scaffold_466-1575043694:406374..406485Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1575043694:405158..406087TCONS_00067229-exon-scaffold_466-1575043694:405158..406087Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1510915933:415760..415943TCONS_00067229-exon-scaffold_466-1510915933:415760..415943Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1510915933:415080..415191TCONS_00067229-exon-scaffold_466-1510915933:415080..415191Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1510915933:413517..413569TCONS_00067229-exon-scaffold_466-1510915933:413517..413569Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1510915933:412596..412786TCONS_00067229-exon-scaffold_466-1510915933:412596..412786Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1510915933:412021..412122TCONS_00067229-exon-scaffold_466-1510915933:412021..412122Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1510915933:411429..411511TCONS_00067229-exon-scaffold_466-1510915933:411429..411511Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1510915933:411026..411138TCONS_00067229-exon-scaffold_466-1510915933:411026..411138Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1510915933:408471..408966TCONS_00067229-exon-scaffold_466-1510915933:408471..408966Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1510915933:407881..408045TCONS_00067229-exon-scaffold_466-1510915933:407881..408045Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1510915933:407209..407366TCONS_00067229-exon-scaffold_466-1510915933:407209..407366Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1510915933:406374..406485TCONS_00067229-exon-scaffold_466-1510915933:406374..406485Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1510915933:405158..406087TCONS_00067229-exon-scaffold_466-1510915933:405158..406087Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1491911889:415760..415943TCONS_00067229-exon-scaffold_466-1491911889:415760..415943Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1491911889:415080..415191TCONS_00067229-exon-scaffold_466-1491911889:415080..415191Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1491911889:413517..413569TCONS_00067229-exon-scaffold_466-1491911889:413517..413569Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1491911889:412596..412786TCONS_00067229-exon-scaffold_466-1491911889:412596..412786Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1491911889:412021..412122TCONS_00067229-exon-scaffold_466-1491911889:412021..412122Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1491911889:411429..411511TCONS_00067229-exon-scaffold_466-1491911889:411429..411511Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1491911889:411026..411138TCONS_00067229-exon-scaffold_466-1491911889:411026..411138Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1491911889:408471..408966TCONS_00067229-exon-scaffold_466-1491911889:408471..408966Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1491911889:407881..408045TCONS_00067229-exon-scaffold_466-1491911889:407881..408045Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1491911889:407209..407366TCONS_00067229-exon-scaffold_466-1491911889:407209..407366Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1491911889:406374..406485TCONS_00067229-exon-scaffold_466-1491911889:406374..406485Clytia hemisphaericaexon
TCONS_00067229-exon-scaffold_466-1491911889:405158..406087TCONS_00067229-exon-scaffold_466-1491911889:405158..406087Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067229-proteinTCONS_00067229-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:405158..415943 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
44.8957	42.78	28.1774	29.9393	23.5669	19.7688	20.498	21.2136	14.254	17.8954	13.4681	9.89074	11.6365	11.6448	11.1488	13.1104	18.4292	17.8149	5.77064	8.65368	12.6738	11.3894	34.4538	32.8533	17.225	16.5471	13.5586	12.0098	21.9186	23.6205
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003877SPRY_dom
IPR006595CTLH_C
IPR006594LisH
IPR024964CTLH/CRA
IPR001870B30.2/SPRY
IPR013320ConA-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00067229 vs. Swiss-Prot (Human)
Match: RBP10 (Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 PE=1 SV=1)

HSP 1 Score: 436.802 bits (1122), Expect = 6.175e-141
Identity = 212/337 (62.91%), Postives = 256/337 (75.96%), Query Frame = 1 
Query:   61 RIASLYPFVNEAETPLPRSWSSQDKCSHIGLSQNNLRAHYKGVGKTHKDAASARASYPIPAGCGLYYFEVKVISKGRDGYIGVGLCAHGVNTSKLPGWEKDSYGYHADDGHSFCASAAGEAYGPTFTTGDIIGCGLNLINKTCFYTKNGVNLGIAFKDLIPNLYPTIGLQTPGEIVDVNFGQQDFVFDIEEMKKKLQASTLRIIENFPVSTDDGSWHATLQRIVSAYLVHHGYCATAETFAKSTGQSIAEEXXXXXXXXXXXXXXXXGRISEAIDAIQTLYPGLLDQNSDLFFKLKCRQFIEMVNGCDGEVK-----------TYAHSPSRSLRNSP 1038
            R+  LYP VN+ ETPLPRSWS +DK ++IGLSQ NLR HYKG GK HKDAAS RA++PIPA CG+YYFEVK++SKGRDGY+G+GL A GVN ++LPGW+K SYGYH DDGHSFC+S  G+ YGPTFTTGD+IGC +NLIN TCFYTKNG +LGIAF DL  NLYPT+GLQTPGEIVD NFGQQ F+FDIE+  ++ +A     +  FP+S   G W A LQ +VS+YLVHHGYCATA  FA+ T   I EE +SI+NRQ+IQ+L+L GR+ EAI+  Q  YPGLL+ N +L F LKCRQF+EMVNG D EV+           +Y  SPS S R+ P
Sbjct:   38 RLQRLYPAVNQQETPLPRSWSPKDKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYPGSPSLSPRHGP 374

HSP 2 Score: 115.546 bits (288), Expect = 2.088e-26
Identity = 58/136 (42.65%), Postives = 87/136 (63.97%), Query Frame = 2 
Query: 1484 TNSSKAIDTGPSMRQLCGGNIYAIEKLLSFGKELRTLYKESKRXXXXXXXXXXXXLMKEAFSLLAYNNPRESPVGYLLEPEQREEICSAVNSSILEAHKLPGQPALELSLAQIDSCLKMMGKNGLGACAMVNLKNF 1891
            T+ S   D  P  RQLCGGN  A E+++ FG+EL+ L ++  RE           ++++AFSLLAY++P   PVG  L+P QRE +C+A+NS+ILE+  LP QP L L+L Q   CL++M + GLG+C+   + ++
Sbjct:  486 TDESSMDDRHPR-RQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTE--MLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFARVDDY 618
The following BLAST results are available for this feature:
BLAST of TCONS_00067229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBP106.175e-14162.91Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 ... [more]
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