TCONS_00067913-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067913-protein
Unique NameTCONS_00067913-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067913-protein ID=TCONS_00067913-protein|Name=TCONS_00067913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
KTCGTDLVATYETTQCLDISNCFESGYYMGGQGESCDTFCSSRGMVCSTE
IKTGNSPTIFQSVLPNYKMSTNQPTWNKPYSPHCDEQNHCYGYSNVPDEV
SCEVAPVAQQRRFCHCMNRADLGYADWAPWSHCSQTCEGVKRRTRECLGL
QCDGDSEEMNNCGTERCPIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNP
TPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMR
TRQCKHGMYGGRRDCIGNGEEEFECNTHTCPPVWANLVLRFDSEY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042413XLOC_042413Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067913TCONS_00067913Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 189..200
score: 44.42
coord: 171..184
score: 45.28
coord: 208..219
score: 30.88
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 173..225
e-value: 5.0E-12
score: 55.9
coord: 230..281
e-value: 8.7E-6
score: 35.2
coord: 124..168
e-value: 2.4E-6
score: 37.1
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 126..167
e-value: 3.3E-4
score: 20.7
coord: 232..280
e-value: 4.8E-7
score: 29.8
coord: 174..224
e-value: 7.5E-12
score: 45.2
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 169..224
e-value: 2.4E-16
score: 59.3
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 118..168
e-value: 2.9E-7
score: 30.3
coord: 226..281
e-value: 8.6E-12
score: 44.8
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 227..281
score: 11.216
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 121..168
score: 10.627
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 170..225
score: 12.517
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 224..280
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 121..167
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 169..220

Blast
BLAST of TCONS_00067913-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.766e-30
Identity = 66/168 (39.29%), Postives = 87/168 (51.79%), Query Frame = 0
Query:  123 GYADWAPWSHCSQTC-EGVKRRTRECL-------GLQCDGDSEEMNNCGTERCPIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKH-GMYGGRRDCIGNGEEEFECNTHTCP 281
             ++ W PW  CS++C +G + R R C        G  CDG   +M  C    CPIHG ++ W+SWS C V+CGGG   R+R C++P P+YGG  C GS  + D CN+  CP    W  WS W  C++ C  G   R R C +     G R C G   +   CNT  CP
Sbjct: 4645 AWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812          

HSP 2 Score: 120.939 bits (302), Expect = 1.800e-30
Identity = 66/167 (39.52%), Postives = 84/167 (50.30%), Query Frame = 0
Query:  124 YADWAPWSHCSQTCEG-VKRRTRECL-------GLQCDGDSEEMNNCGTERCPIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKHGM-YGGRRDCIGNGEEEFECNTHTCP 281
            +A WA WS CS +C G  ++RTR C        G +C+G   + + C ++ CP HG +S WS W  C  TC GG   R R C+NP P  GG  C G   +   CN   CPVD  W  W  WS C+ +CG G   R R C H +   G R C G+  +   CN   CP
Sbjct: 4703 WATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869          

HSP 3 Score: 120.553 bits (301), Expect = 2.371e-30
Identity = 66/180 (36.67%), Postives = 97/180 (53.89%), Query Frame = 0
Query:  115 HCMNR---ADLGYADWAPWSHCSQTC-EGVKRRTRECL-------GLQCDGDSEEMNNCGTERCPIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKHGM--YGGRRDCIGNGEEEFECNTHTCP 281
            +C N+    D  +++W+ W  C+++C  G + RTR C        G  C+G++ E+  C    CP+HG +S W  W  C  +CG GT  R+R CNNP P +GG+ C G+  +   CN   CP+   W  W+ WS C+ +CG G   RTR C   +  YGGR+ C G+  +   CN+  CP
Sbjct: 4577 NCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRK-CEGSDVQSDFCNSDPCP 4755          

HSP 4 Score: 116.701 bits (291), Expect = 4.767e-29
Identity = 64/169 (37.87%), Postives = 89/169 (52.66%), Query Frame = 0
Query:  123 GYADWAPWSHCSQTC-EGVKRRTRECL-------GLQCDGDSEEMNNCGTERCPIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKH--GMYGGRRDCIGNGEEEFECNTHTCP 281
            G++ W+ W  CS TC +G+++R+R C        G  C G   EM NC  + CP+ G +S+WS W +C  +CG G   R+R CNNP+ ++GG  C G+  E   CN   CPV   W  W  W  C+++CG GT  R R C +    +GG   C G   +   CN   CP
Sbjct: 4531 GFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSY-CDGAETQMQVCNERNCP 4698          

HSP 5 Score: 111.694 bits (278), Expect = 2.582e-27
Identity = 56/114 (49.12%), Postives = 62/114 (54.39%), Query Frame = 0
Query:  169 IHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKH-GMYGGRRDCIGNGEEEFECNTHTCP 281
            +HGGFS WS+W  C VTCG G   RSR CN P P  GG  C GS  E   C N  CPVD  W EWS W  C ++CG G   RTR C +  +  G R C GN  E   CN   CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP 4641          
The following BLAST results are available for this feature:
BLAST of TCONS_00067913-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN11.766e-3039.29Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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