TCONS_00071495-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071495-protein
Unique NameTCONS_00071495-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length227

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071495-protein ID=TCONS_00071495-protein|Name=TCONS_00071495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
QIFVKIEHRPSVTVTVIVDSNGYDTIEKVKNQIYDKEGYHLDDYRLYFAG
RILQNHRTTAGYNIDRESTLHLVLGQGFQPTAQLTEINVKTLAGKTITLK
VDPNDTVENIVFIIQSDYKIPISQRHLFFTDQKGHSYSPKLDEKRTLASY
NVHTDSTFRLHESPIQLYIEIPSARKLVMVVEKNDNIEDLKMKIEEEVGF
PIYRQRLEKQSEFLMLYKVKTHNGRNA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044396XLOC_044396Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071495TCONS_00071495Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956UbiquitinPRINTSPR00348UBIQUITINcoord: 35..55
score: 49.5
coord: 56..77
score: 57.97
coord: 14..34
score: 33.85
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 2..75
e-value: 5.0E-12
score: 56.0
coord: 85..163
e-value: 6.9E-6
score: 35.6
IPR000626Ubiquitin domainPFAMPF14560Ubiquitin_2coord: 182..208
e-value: 0.43
score: 10.9
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 87..162
e-value: 2.5E-9
score: 36.7
coord: 2..75
e-value: 2.1E-16
score: 59.3
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 1..74
score: 16.559
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 165..214
score: 9.569
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 85..160
score: 11.791
NoneNo IPR availableGENE3D3.10.20.90coord: 1..79
e-value: 3.7E-18
score: 64.6
NoneNo IPR availableGENE3D3.10.20.90coord: 163..225
e-value: 5.0E-7
score: 28.9
NoneNo IPR availableGENE3D3.10.20.90coord: 80..162
e-value: 6.8E-17
score: 60.6
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 82..164
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 141..214
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 1..75

Blast
[Close]
BLAST of TCONS_00071495-protein vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.247e-40
Identity = 87/212 (41.04%), Postives = 125/212 (58.96%), Query Frame = 0 
Query:    1 QIFVKIEHRPSVTVTVIVDSNGYDTIEKVKNQIYDKEGYHLDDYRLYFAGRILQNHRTTAGYNIDRESTLHLV--LGQGFQPTAQLTEINVKTLAGKTITLKVDPNDTVENIVFIIQSDYKIPISQRHLFFTDQKGHSYSPKLDEKRTLASYNVHTDSTFRL---HESPIQLYIEIPSARKLVMVVEKNDNIEDLKMKIEEEVGFPIYRQRL 207
            QIFVK     ++T+ V       DTIE VK +I DKEG   D  RL FAG+ L++ RT + YNI +ESTLHLV  L  G Q       I VKTL GKTITL+V+P+DT+EN+   IQ    IP  Q+ L F  +       +L++ RTL+ YN+  +ST  L       +Q++++  + + + + VE +D IE++K KI+++ G P  +QRL
Sbjct:    2 QIFVKTLTGKTITLEV----EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQ-------IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 195

HSP 2 Score: 114.005 bits (284), Expect = 4.222e-31
Identity = 73/162 (45.06%), Postives = 95/162 (58.64%), Query Frame = 0 
Query:    1 QIFVKIEHRPSVTVTVIVDSNGYDTIEKVKNQIYDKEGYHLDDYRLYFAGRILQNHRTTAGYNIDRESTLHLVLG--QGFQPTAQLTEINVKTLAGKTITLKVDPNDTVENIVFIIQSDYKIPISQRHLFFTDQKGHSYSPKLDEKRTLASYNVHTDSTFRL 160
            QIFVK     ++T+ V       DTIE VK +I DKEG   D  RL FAG+ L++ RT + YNI +ESTLHLVL    G Q       I VKTL GKTITL+V+P+DT+EN+   IQ    IP  Q+ L F  +       +L++ RTL+ YN+  +ST  L
Sbjct:   78 QIFVKTLTGKTITLEV----EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQ-------IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLSDYNIQKESTLHL 221
The following BLAST results are available for this feature:
BLAST of TCONS_00071495-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBB6.247e-4041.04Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1[more]
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