TCONS_00071495 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071495
Unique NameTCONS_00071495
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length915

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071495 ID=TCONS_00071495|Name=TCONS_00071495|organism=Clytia hemisphaerica|type=transcript|length=915bp
GGACCACCAATCTTGGCAAATCCTCTTACGGAGCCATGTCTTTAGACTGA
GTACCACCCGCGCGCAGAGTAATAAAAACGGCCTAGAGATCGAAGAATAT
TCATTCGGAACTTTAATTTGTTTAAACTTCTTCACGTCGCAATATAATCA
TAAAATTACCTTTAtcgttcaattttcaatgaagtCAACTATTTATAATA
ATActaaaagatatttttaaaatcgTCTCTCTAGGCATTCCTGCCATTAT
GAGTTTTCACTTTATAAAGCATGAGGAATTCTGATTGTTTCTCAAGACGT
TGTCTATATATTGGGAATCCTACCTCCTCTTCTATCTTCATCTTCAAGTC
CTCAATATTGTCGTTTTTCTCGACTACCATGACCAATTTTCTCGCTGAAG
GAATTTCAATGTAAAGTTGAATGGGACTTTCATGTAATCGAAAGGTCGAA
TCTGTGTGAACATTATAAGAGGCCAATGTGCGTTTTTCATCTAGTTTTGG
GGAATATGAATGGCCTTTTTGATCAGTGAAAAATAGATGTCTCTGTGAAA
TTGGTATTTTATAATCACTCTGTATGATAAATACAATATTTTCCACGGTG
TCATTGGGATCGACTTTCAACGTAATTGTTTTCCCAGCTAGAGTCTTAAC
ATTAATTTCAGTCAGTTGAGCGGTAGGTTGAAATCCTTGTCCTAGTACTA
AATGAAGTGTTGATTCTCTGTCAATGTTATAGCCAGCAGTTGTTCGGTGG
TTTTGTAATATTCTGCCAGCGAAATATAGTCGATAATCATCTAGATGATA
ACCTTCTTTATCATAAATctgatttttcactttttcaatgGTATCATAGC
CATTGCTGTCCACAATAACTGTAACAGTCACCGATGGTCTGTGttcaatt
ttgacgaaaatttgT
Run BLAST on NCBI

protein sequence of TCONS_00071495-protein

>TCONS_00071495-protein ID=TCONS_00071495-protein|Name=TCONS_00071495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
QIFVKIEHRPSVTVTVIVDSNGYDTIEKVKNQIYDKEGYHLDDYRLYFAG
RILQNHRTTAGYNIDRESTLHLVLGQGFQPTAQLTEINVKTLAGKTITLK
VDPNDTVENIVFIIQSDYKIPISQRHLFFTDQKGHSYSPKLDEKRTLASY
NVHTDSTFRLHESPIQLYIEIPSARKLVMVVEKNDNIEDLKMKIEEEVGF
PIYRQRLEKQSEFLMLYKVKTHNGRNA
Run BLAST on NCBI

transcript from alignment at scaffold_60:147365..148279

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071495 ID=TCONS_00071495|Name=TCONS_00071495|organism=Clytia hemisphaerica|type=transcript|length=915bp|location=Sequence derived from alignment at scaffold_60:147365..148279 (Clytia hemisphaerica)
AcaaattttcgtcaaaattgaaCACAGACCATCGGTGACTGTTACAGTTA
TTGTGGACAGCAATGGCTATGATACcattgaaaaagtgaaaaatcagATT
TATGATAAAGAAGGTTATCATCTAGATGATTATCGACTATATTTCGCTGG
CAGAATATTACAAAACCACCGAACAACTGCTGGCTATAACATTGACAGAG
AATCAACACTTCATTTAGTACTAGGACAAGGATTTCAACCTACCGCTCAA
CTGACTGAAATTAATGTTAAGACTCTAGCTGGGAAAACAATTACGTTGAA
AGTCGATCCCAATGACACCGTGGAAAATATTGTATTTATCATACAGAGTG
ATTATAAAATACCAATTTCACAGAGACATCTATTTTTCACTGATCAAAAA
GGCCATTCATATTCCCCAAAACTAGATGAAAAACGCACATTGGCCTCTTA
TAATGTTCACACAGATTCGACCTTTCGATTACATGAAAGTCCCATTCAAC
TTTACATTGAAATTCCTTCAGCGAGAAAATTGGTCATGGTAGTCGAGAAA
AACGACAATATTGAGGACTTGAAGATGAAGATAGAAGAGGAGGTAGGATT
CCCAATATATAGACAACGTCTTGAGAAACAATCAGAATTCCTCATGCTTT
ATAAAGTGAAAACTCATAATGGCAGGAATGCCTAGAGAGAcgattttaaa
aatatcttttagTATTATTATAAATAGTTGacttcattgaaaattgaacg
aTAAAGGTAATTTTATGATTATATTGCGACGTGAAGAAGTTTAAACAAAT
TAAAGTTCCGAATGAATATTCTTCGATCTCTAGGCCGTTTTTATTACTCT
GCGCGCGGGTGGTACTCAGTCTAAAGACATGGCTCCGTAAGAGGATTTGC
CAAGATTGGTGGTCC

Coding sequence (CDS) from alignment at scaffold_60:147365..148279

>TCONS_00071495 ID=TCONS_00071495|Name=TCONS_00071495|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_60:147365..148279 (Clytia hemisphaerica)
caaattttcgtcaaaattgaaCACAGACCATCGGTGACTGTTACAGTTAT
TGTGGACAGCAATGGCTATGATACcattgaaaaagtgaaaaatcagATTT
ATGATAAAGAAGGTTATCATCTAGATGATTATCGACTATATTTCGCTGGC
AGAATATTACAAAACCACCGAACAACTGCTGGCTATAACATTGACAGAGA
ATCAACACTTCATTTAGTACTAGGACAAGGATTTCAACCTACCGCTCAAC
TGACTGAAATTAATGTTAAGACTCTAGCTGGGAAAACAATTACGTTGAAA
GTCGATCCCAATGACACCGTGGAAAATATTGTATTTATCATACAGAGTGA
TTATAAAATACCAATTTCACAGAGACATCTATTTTTCACTGATCAAAAAG
GCCATTCATATTCCCCAAAACTAGATGAAAAACGCACATTGGCCTCTTAT
AATGTTCACACAGATTCGACCTTTCGATTACATGAAAGTCCCATTCAACT
TTACATTGAAATTCCTTCAGCGAGAAAATTGGTCATGGTAGTCGAGAAAA
ACGACAATATTGAGGACTTGAAGATGAAGATAGAAGAGGAGGTAGGATTC
CCAATATATAGACAACGTCTTGAGAAACAATCAGAATTCCTCATGCTTTA
TAAAGTGAAAACTCATAATGGCAGGAATGCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044396XLOC_044396Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071495-proteinTCONS_00071495-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071495-exon-scaffold_60-1491911889:147365..148279TCONS_00071495-exon-scaffold_60-1491911889:147365..148279Clytia hemisphaericaexon
TCONS_00071495-exon-scaffold_60-1510915933:147365..148279TCONS_00071495-exon-scaffold_60-1510915933:147365..148279Clytia hemisphaericaexon
TCONS_00071495-exon-scaffold_60-1575043694:147365..148279TCONS_00071495-exon-scaffold_60-1575043694:147365..148279Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:147365..148279 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.201007	0.0980068	0.853464	0.946312	0	0	2.39044	2.84274	3.13362	2.83244	3.36018	2.61046	1.53736	1.04124	4.96502	6.33876	2.98018	2.89993	3.52564	2.57135	1.60335	1.8485	1.78615	1.99055	4.80182	5.34485	4.82336	3.5298	5.2429	4.54612
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00071495 vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 7.806e-38
Identity = 87/212 (41.04%), Postives = 125/212 (58.96%), Query Frame = -2 
Query:  294 QIFVKIEHRPSVTVTVIVDSNGYDTIEKVKNQIYDKEGYHLDDYRLYFAGRILQNHRTTAGYNIDRESTLHLV--LGQGFQPTAQLTEINVKTLAGKTITLKVDPNDTVENIVFIIQSDYKIPISQRHLFFTDQKGHSYSPKLDEKRTLASYNVHTDSTFRL---HESPIQLYIEIPSARKLVMVVEKNDNIEDLKMKIEEEVGFPIYRQRL 914
            QIFVK     ++T+ V       DTIE VK +I DKEG   D  RL FAG+ L++ RT + YNI +ESTLHLV  L  G Q       I VKTL GKTITL+V+P+DT+EN+   IQ    IP  Q+ L F  +       +L++ RTL+ YN+  +ST  L       +Q++++  + + + + VE +D IE++K KI+++ G P  +QRL
Sbjct:    2 QIFVKTLTGKTITLEV----EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQ-------IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 195

HSP 2 Score: 113.62 bits (283), Expect = 2.159e-29
Identity = 73/162 (45.06%), Postives = 95/162 (58.64%), Query Frame = -2 
Query:  435 QIFVKIEHRPSVTVTVIVDSNGYDTIEKVKNQIYDKEGYHLDDYRLYFAGRILQNHRTTAGYNIDRESTLHLVLG--QGFQPTAQLTEINVKTLAGKTITLKVDPNDTVENIVFIIQSDYKIPISQRHLFFTDQKGHSYSPKLDEKRTLASYNVHTDSTFRL 914
            QIFVK     ++T+ V       DTIE VK +I DKEG   D  RL FAG+ L++ RT + YNI +ESTLHLVL    G Q       I VKTL GKTITL+V+P+DT+EN+   IQ    IP  Q+ L F  +       +L++ RTL+ YN+  +ST  L
Sbjct:   78 QIFVKTLTGKTITLEV----EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQ-------IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLSDYNIQKESTLHL 221
The following BLAST results are available for this feature:
BLAST of TCONS_00071495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBB7.806e-3841.04Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1[more]
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