TCONS_00071866-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071866-protein
Unique NameTCONS_00071866-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length241

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071866-protein ID=TCONS_00071866-protein|Name=TCONS_00071866-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MHDKTRKRSSFMMDDILSGVEGKRDNHKYSEKSMTMNNDLTINEVVQKKL
KLASDEVSNRAFVEEEDDVFDYTKIDSPPSPEIRKLRTTFSSEQVLLLEK
RFTKQRYLSANERLELAKKLKLSDNQVKTWYQNRRMKLKRQLKIQMQRYH
EELYFQSLHNCFIQQQPHNAPHPLQNTPPLYQNPQHPQPPHESRHCFRDN
NAIKPMPYLRPSISPTTPRHHGKSPDCNQVSCRCRQNSLEI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044613XLOC_044613Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071866TCONS_00071866Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020479Homeobox_metazoa
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020479Homeobox domain, metazoaPRINTSPR00024HOMEOBOXcoord: 105..116
score: 44.34
coord: 130..139
score: 71.16
coord: 120..130
score: 50.97
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 83..145
e-value: 2.5E-21
score: 86.8
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 84..140
e-value: 1.0E-19
score: 70.0
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 81..141
score: 20.018
NoneNo IPR availableGENE3D1.10.10.60coord: 22..144
e-value: 9.4E-23
score: 79.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..198
NoneNo IPR availableCDDcd00086homeodomaincoord: 84..141
e-value: 5.01289E-18
score: 74.202
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 116..139
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 76..148

Blast
[Close]
BLAST of TCONS_00071866-protein vs. Swiss-Prot (Human)
Match: BARH1 (BarH-like 1 homeobox protein OS=Homo sapiens GN=BARHL1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.361e-21
Identity = 69/197 (35.03%), Postives = 96/197 (48.73%), Query Frame = 0 
Query:    9 SSFMMDDILSGVEGKRDNHKYSEKSMTMNND------LTINEVVQKKL-KLASDEVSNRAF-VEEEDDVFDYTKIDSPPS--PEIRKLRTTFSSEQVLLLEKRFTKQRYLSANERLELAKKLKLSDNQVKTWYQNRRMKLKRQLKIQMQRYHEELYFQSLHNCFIQQQPHNAPHPL-QNTPP-----LYQNPQHPQP 189
            SSF++ DIL+  +       YS        +          E  + KL K  S+  S+  + V+EE D    +  DSPP    + RK RT F+  Q+  LE+ F +Q+YLS  +R+ELA  L L+D QVKTWYQNRR K KRQ  + ++   E   + +L   F    P+  P  L  N  P     LY+ P  P P
Sbjct:   94 SSFLIRDILADCKPLAACAPYSSSGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMF--PSPYFYPQSLVSNLDPGAALYLYRGPSAPPP 288
The following BLAST results are available for this feature:
BLAST of TCONS_00071866-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BARH14.361e-2135.03BarH-like 1 homeobox protein OS=Homo sapiens GN=BA... [more]
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