TCONS_00071996-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00071996-protein
Unique Name	TCONS_00071996-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	833

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00071996-protein ID=TCONS_00071996-protein|Name=TCONS_00071996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=833bp
MGKKAKIGKKRKDKFYHLAKETGYRARSAFKLIQLNRKFGFLQESRALID
LCAAPGGWLQVASNFMPMSSVILGVDLVPIKAIKNVTTFASDITTDNCRQ
LLKKELKGWKADVVLNDGAPNVGSAWIQDAFTQSQLALSALKLASEFLRK
GGWFITKIFRSKDYTALLWVFQQLFKKVHSTKPQASRSESAEIFVVCQGF
LAPDKLDEKFLDPRHVFKEIQDSSKVKLDVLRPEKHVRHREGYDENNTTM
FEKITAMDFFKSPNAIDVLSTVNKIEVINEEIKNHAETNEEILHCCEDIK
VLGRKELKNLFTWRKKLRKALELHKDEEEAEDKSKEEVQEEPMNEEEQLD
EMVSNLKDEEEKDLKKKKKKVREQKKKLRERLAGKLADAMGETENQDQEM
FALNQINSKKELDDEYEGDDQSLYDEDSEGEELQFESDQEEGGNDDSEAD
SSDEEYAYGDDELYEKSAKKRRMEQDDQQKKQKSLQKSKLKKLQRKSENP
LLVNMNEDISEEANKITKAKQWFQKDIFKGAEGRDKGDSGAESEEEDEDE
DYDIEAVLKAHKKKGGKVVESVKTSKESSKKENGKTHQDEEDRNEEDTSD
ESSSDEDDGDIDDRSIVQGKEQDKQDRQKKKDGFEIAPVNHGTLGPEALA
IGAAIATSRKRKRDIVDDSFNRYSYNDNGLPSWFTEDEAKHTLRHVPVTK
EEVAYYKQRMMEINARPIKKVVEAKTKRKYKTMKKLERARKRAQGILDAT
DVSSQEKTQQIKGIYKKAGLLSKKKAETTYVVAKKGLAGKKYKRPNNVKG
PYKVVDPRMKKDLKAAASKEKTKGRGRKKGKKR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044697	XLOC_044697	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00071996	TCONS_00071996	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR024576	rRNA_MeTfrase_Spb1_DUF3381
IPR012920	rRNA_MeTfrase_Spb1_C
IPR002877	rRNA_MeTrfase_FtsJ_dom
IPR015507	rRNA-MeTfrase_E
IPR028589	Spb1
IPR029063	SAM-dependent_MTases

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing
GO:0032259	methylation
GO:0001510	RNA methylation
GO:0031167	rRNA methylation

Vocabulary: **Molecular Function**
Term	Definition
GO:0008168	methyltransferase activity
GO:0008649	rRNA methyltransferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0001510	RNA methylation
biological_process	GO:0031167	rRNA methylation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0008649	rRNA methyltransferase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 317..341
None	No IPR available	COILS	Coil	Coil	coord: 357..388
None	No IPR available	GENE3D	3.40.50.150		coord: 3..217 e-value: 5.2E-49 score: 166.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 324..506
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 520..646
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 790..833
IPR024576	Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381	PFAM	PF11861	DUF3381	coord: 233..381 e-value: 4.8E-41 score: 140.2
IPR012920	Ribosomal RNA methyltransferase, Spb1, C-terminal	PFAM	PF07780	Spb1_C	coord: 606..821 e-value: 3.5E-63 score: 213.0
IPR002877	Ribosomal RNA methyltransferase FtsJ domain	PFAM	PF01728	FtsJ	coord: 24..200 e-value: 7.5E-56 score: 188.9
IPR015507	Ribosomal RNA large subunit methyltransferase E	HAMAP	MF_01547	RNA_methyltr_E	coord: 8..201 score: 29.346
IPR028589	AdoMet-dependent rRNA methyltransferase, Spb1	HAMAP	MF_03163	RNA_methyltr_E_SPB1	coord: 1..823 score: 21.324
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 23..201

Blast

[Close]

BLAST of TCONS_00071996-protein vs. Swiss-Prot (Human)
Match: SPB1 (pre-rRNA processing protein FTSJ3 OS=Homo sapiens GN=FTSJ3 PE=1 SV=2)

HSP 1 Score: 638.262 bits (1645), Expect = 0.000e+0
Identity = 377/870 (43.33%), Postives = 546/870 (62.76%), Query Frame = 0

Query:    1 MGKKAKIGKKRKDKFYHLAKETGYRARSAFKLIQLNRKFGFLQESRALIDLCAAPGGWLQVASNFMPMSSVILGVDLVPIKAIKNVTTFASDITTDNCRQLLKKELKGWKADVVLNDGAPNVGSAWIQDAFTQSQLALSALKLASEFLRKGGWFITKIFRSKDYTALLWVFQQLFKKVHSTKPQASRSESAEIFVVCQGFLAPDKLDEKFLDPRHVFKEIQDSSKVKLDVLRPEKHVRHREGYDENNTTMFEKITAMDFFKSPNAIDVLSTVNKIEVINEEIKNHAETNEEILHCCEDIKVLGRKELKNLFTWRKKLRKAL-ELHKDEEEAEDKSKEE--------------VQEEP------MNEEEQLDEMVSNLKDEEEKDLKKKKKKVREQKKKLRERLAGKLADAMGETENQDQE--MFALNQINSKKELDDEYEGDDQS--LYDEDSEGEELQFESDQEEGGNDDSEADSSDEEYAYGDDELYEKSAKKRRMEQDDQQKKQKSLQKSKLKKLQRKSENPLLVNMNED--ISEEANKITKAKQWFQKDIFKGAEGRDKGDSGAESEEEDEDEDYDIE--AVLKAHKKKG---GKVVESVKTSKESSKKE-NGKTHQDEEDRNEEDTSDESSSDEDDGDIDD----------------RSIVQGKEQDKQDRQKKKDGFEIAPV----NHGTLGPEALAIGAAIATSRKRKRDIVDDSFNRYSYN-DNG-LPSWFTEDEAKHTLRHVPVTKEEVAYYKQRMMEINARPIKKVVEAKTKRKYKTMKKLERARKRAQGILDATDVSSQEKTQQIKGIYKKAGLLSKKKAETTYVVAKKGLAGKKYKRPNNVKGPYKVVDPRMKKDLKA 815
            MGKK K+GK R+DKFYHLAKETGYR+RSAFKLIQLNR+F FLQ++RAL+DLCAAPGGWLQVA+ FMP+SS+I+GVDLVPIK + NV T   DITT+ CRQ L+KELK WK DVVLNDGAPNVG++W+ DA++Q+ L L AL+LA +FL +GG FITK+FRS+DY  LLW+FQQLF++V +TKPQASR ESAEIFVVCQGFLAPDK+D KF DP+  FKE++  +K   +++  +K     EGY E + T++ + +  DF ++ N +D LS  ++I V +EE+  H  T E+I  CC+DI+VLGRKEL++L  WR KLR+ + +  K++ +A D S                   ++P        EEEQL++ ++ +K +E  +LK+KKKK+  +++K RER+  K+ D  G +   + E  MF+L+ I   + L++  +GD  +   +  D   +++     +++G +   ++D   EE A              R  Q  + +K+  L + +  K + + ENPLLV + E   + EE     +A  WF K  F G              E+D DE  +I    +L  +++KG    +  +  +T     K E     +QDE  +  E +S   ++   +G+  D                   ++GK++ +  +    DGFEI P+     H  L PE LA+GA IA+S+K KRD++D+SFNRY++N D G LP WF ++E +H +R +PV K+EV +Y++R  EINARPIKKV EAK ++K + +K+LE+ RK+A+ +++  D+S +EK  Q++ +YKKAG L K+K   TYVVAKKG+ G+K +RP  V+G +KVVD RMKKD +A
Sbjct:    1 MGKKGKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPVSSLIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRHESAEIFVVCQGFLAPDKVDSKFFDPKFAFKEVEVQAKTVTELVTKKKP--KAEGYAEGDLTLYHRTSVTDFLRAANPVDFLSKASEIMVDDEELAQHPATTEDIRVCCQDIRVLGRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSSGEEDEGDEEDSTAGTTKQPSKEEEEEEEEEQLNQTLAEMKAQEVAELKRKKKKLLREQRKQRERVELKM-DLPGVSIADEGETGMFSLSTIRGHQLLEEVTQGDMSAADTFLSDLPRDDIYVSDVEDDGDDTSLDSDLDPEELA------------GVRGHQGLRDQKRMRLTEVQDDKEEEEEENPLLVPLEEKAVLQEE-----QANLWFSKGSFAGI-------------EDDADEALEISQAQLLFENRRKGRQQQQKQQLPQTPPSCLKTEIMSPLYQDEAPKGTEASSGTEAATGLEGEEKDGISDSDSSTSSEEEESWEPLRGKKRSRGPKS-DDDGFEIVPIEDPAKHRILDPEGLALGAVIASSKKAKRDLIDNSFNRYTFNEDEGELPEWFVQEEKQHRIRQLPVGKKEVEHYRKRWREINARPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNTVDISEREKVAQLRSLYKKAG-LGKEKRHVTYVVAKKGV-GRKVRRPAGVRGHFKVVDSRMKKDQRA 834

The following BLAST results are available for this feature:

BLAST of TCONS_00071996-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00071996-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SPB1	0.000e+0	43.33	pre-rRNA processing protein FTSJ3 OS=Homo sapiens ...	[more]

You are here

TCONS_00071996-protein (polypeptide) - C. hemisphaerica