TCONS_00072198-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072198-protein
Unique Name	TCONS_00072198-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	661

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072198-protein ID=TCONS_00072198-protein|Name=TCONS_00072198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=661bp
MAATIMNFDVFNKLQNAPSLYTMQSNEPAIRIYEICDSTESNPKPEKNHD
LMLGEFVTQQNLREITGTPDLSQVEELKLKVDTNETSIGNIGTSLGSMVP
GLKRLNLSNSYVTSIRDLGTSFSNLTMIWLCRCSLVELDGISSLSSMKEL
FLAFNDISDLSPLSMLDTLEVLDLEANNIDDITQVEFLSLCSDLINLTMK
GNPIEVKPTPESQKADLKYYNYSDAIITCLPMLKILDDEPLLVERVDGQE
VKRVNPRKVNRDEGAFENDLKLIEVSLKSLETEELVEENEDIDQSVARPR
TATRRSRTAKSPEKKITRAIVSPEDRILSSAIKKDTEKESEPMKSTSEVT
NFSSDLTSGNVMCGNPFAALRRRKRQTTPEDKPPQKEEPVTLVTKSKSDT
SANIFKAEHSYLSAEETNVGKKEDVFEELRQWRLKNQSLFDSMATTKIKS
NTSRSTREQTTSPSKAVDTTASGGDGDVSPRRKQPTPLKPLSPLRSSIDS
SMFKRRTSPQKPAFSPAPPSLPRKNTTPGRTRRSLQTSPPKAVLPNIGDR
PHTVGGTRTEIFLTDVSYPNQLSARDGSDIQQTHVTLNQRTDINANIRSK
SHPVQNQRKTPSPPLSPLNRPMTARAALQSLXPPLSPSNRPMTARAALQS
LQRPFSRTNDR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044825	XLOC_044825	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072198	TCONS_00072198	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	L_dom-like
IPR001611	Leu-rich_rpt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 54..254 e-value: 1.9E-22 score: 78.6
IPR032675	Leucine-rich repeat domain, L domain-like	SUPERFAMILY	52058	L domain-like	coord: 97..242
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 168..189 score: 8.367
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 124..145 score: 5.317
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 146..167 score: 7.319
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 101..122 score: 6.002

Blast

[Close]

BLAST of TCONS_00072198-protein vs. Swiss-Prot (Human)
Match: LRC56 (Leucine-rich repeat-containing protein 56 OS=Homo sapiens GN=LRRC56 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 6.335e-51
Identity = 119/366 (32.51%), Postives = 190/366 (51.91%), Query Frame = 0

Query:   29 AIRIYEICDSTESNPKPEKNH---------DLMLGEFVTQQNLREITGTPDLSQVEELKLKVDTNETSIGNIGTSLGSMVPGLKRLNLSNSYVTSIRDLGTSFSNLTMIWLCRCSLVELDGISSLSSMKELFLAFNDISDLSPLSMLDTLEVLDLEANNIDDITQVEFLSLCSDLINLTMKGNPIEVKPTPESQKADLKYYNYSDAIITCLPMLKILDDEPLLVERVDGQEVKRVNPRKVNRDEGAFENDLKLIEVSLKSLETEELVEENEDIDQSVARPRTATRRSRTAKSPEKKITRAIVSPEDRILSSAIKKDTEKESEPMKSTSEVTNFSSDLTSGNVMCGNPFAALRRRKRQTTPEDKPPQ 385
            ++R+ E+      NP P+            + ++ E+++   L+ +    DL  V  L++ VDT E S+GN G  L    P L +L L+ S++ S+RDLGTS  +L ++WL RC L +LDGI+SL ++KEL+ ++N+ISDLSPL +L+ LEVLDLE N+++D+ QV +L LC  L  LT++GN + ++P P       + YNY   +   +P L++LD+ P               P ++++D  A +  +K     L  L+          +D  ++ P T +R SR    P   + R    PE  +LS  +         P  +TS +T+      +G V+CGNP   LR R+ Q    + P Q
Sbjct:   17 SVRVRELSWQGLHNPCPQSKGPGSQRDRLGEQLVEEYLSPARLQALARVDDLRLVRTLEMCVDTREGSLGNFGVHL----PNLDQLKLNGSHLGSLRDLGTSLGHLQVLWLARCGLADLDGIASLPALKELYASYNNISDLSPLCLLEQLEVLDLEGNSVEDLGQVRYLQLCPRLAMLTLEGNLVCLQPAPGPTNKVPRGYNYRAEVRKLIPQLQVLDEVP-------AAHTGPPAPPRLSQDWLAVKEAIKKGN-GLPPLDCPRGAPIRR-LDPELSLPETQSRASRPW--PFSLLVRGGPLPEG-LLSEDLA--------PEDNTSSLTH-----GAGQVLCGNPTKGLRERRHQCQAREPPEQ 353

The following BLAST results are available for this feature:

BLAST of TCONS_00072198-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072198-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LRC56	6.335e-51	32.51	Leucine-rich repeat-containing protein 56 OS=Homo ...	[more]

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TCONS_00072198-protein (polypeptide) - C. hemisphaerica