TCONS_00000004 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000004
Unique NameTCONS_00000004
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000004 ID=TCONS_00000004|Name=TCONS_00000004|organism=Clytia hemisphaerica|type=transcript|length=1504bp
AAAGCGGAAGACTTTCATTGGCTATCTCGAAATGTTTACAATCAACAGAC
ACAaaatcataTGGACCACTCAAGgatgaAGACAgaatatttacaaattt
ataTGGAAGACATGATTGGAAACTTAAAGGTGCAATGGCAAGGGGAGACT
ggtacaaaacaaaagaaattatagtCAAGGGTCATGATTGGATTCTTGAT
GAAATCAAAACGTCAGGATTACGTGGACGTGGTGGAGCAGGTTTCCCTAC
TGGATTAAAATGGAGTTTCATGAACAAACCAGATGACGGTCGTCCAAAAT
ATCTCGTTGTCAACGCTGACGAAGGTGAGCCAGGCACTTGCAAAGATCGT
GAAATTATGAGACATGACCCACACAAATTGGTAGAAGGATGCCTGGTAGC
TGGCCGTGCCATGGGCGCCCGCGCCGCTTATATATACATCCGAGGTGAAT
TTTATAACGAAGCGTCTAACATGCAGGTTGCCATCAACGAAGCATACAAA
GCTGGTTTCCTTGGTAAGGATGCATGTGGAAGTGGATACGATTTCGATGT
TTACATGCACCGTGGTGCAGGAGCGTACATTTGTGGCGAAGAAACTGCAC
TTATTGAAAGTTTAGAAGGTAAACAAGGAAAGCCACGATTGAAGCCTCCA
TTTCCAGCTGACGTCGGTGTTTTCGGATGTCCCACCACCGTCGCTAACGT
TGAAACTGTCGCCGTCGCTCCCGAAATTTGCCGTCGTGGAGGAAGTTGGT
TCGTTGGTATGGGCCGCTCACGAAACTCAGGACAAAAGCTTTTCAACATC
TCTGGCCACGTGAACAACCCGTGTACCGTCGAAGAAGAAATGTCTATCCC
ATTGAAAGAGCTCATCGAACGACACGCTGGTGGTGTCACCGGTGGATGGG
ACAACTTGCTGGCCATCATCCCCGGTGGATCATCTACACCACTCATCCCT
ATAGATGTCTGCAGTGACGTCATGATGGATTTCGACGACTTAGTTCGAGC
ACAAACAGGCCTTGGAACGGCTGCCATCATCGTTATGAACAAGCAGAGCG
ACATCGTCCGTTGCATTGCACGTCTCATAGAGTTTTACAAACACGAAAGT
TGTGGACAGtgTACACCATGTCGCGAGGGAGTTGGATGGATGAACAAAAT
CATGGCTCGATTCGtcgAAGGAAAAGCTAAACAGGGAGAAATTGATATGT
TATGGGAAGTGAGCAAACAGATCGAAGGACATACAATTTGTGCCCTCGGT
GACGGTGCTGCTTGGCCAGTACAAGGCTTGATCCGTCATTTCCGACCAGT
ACTGGAAGCCCGTATGAACCAATATCAAGACGATTTCGATACAAAAGTGG
CTGCTGCTGTCTAATACTTTAttattaataaaatattgaatattgatCAA
ATGTATTTTCTATCTATCTATCATCTCTATCTCTCGACTAATTGCGATGG
TTTCAAAACTCGAAGTGTAAATAAGTTActgtattatttttttgtttttg
ctca
Run BLAST on NCBI

protein sequence of TCONS_00000004-protein

>TCONS_00000004-protein ID=TCONS_00000004-protein|Name=TCONS_00000004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp
SGRLSLAISKCLQSTDTKSYGPLKDEDRIFTNLYGRHDWKLKGAMARGDW
YKTKEIIVKGHDWILDEIKTSGLRGRGGAGFPTGLKWSFMNKPDDGRPKY
LVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAAYIYIRGEF
YNEASNMQVAINEAYKAGFLGKDACGSGYDFDVYMHRGAGAYICGEETAL
IESLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPEICRRGGSWF
VGMGRSRNSGQKLFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWD
NLLAIIPGGSSTPLIPIDVCSDVMMDFDDLVRAQTGLGTAAIIVMNKQSD
IVRCIARLIEFYKHESCGQCTPCREGVGWMNKIMARFVEGKAKQGEIDML
WEVSKQIEGHTICALGDGAAWPVQGLIRHFRPVLEARMNQYQDDFDTKVA
AAV
Run BLAST on NCBI

transcript from alignment at sc0000001:107381..124517+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000004 ID=TCONS_00000004|Name=TCONS_00000004|organism=Clytia hemisphaerica|type=transcript|length=17137bp|location=Sequence derived from alignment at sc0000001:107381..124517+ (Clytia hemisphaerica)
AAAGCGGAAGACTTTCATTGGCTATCTCGAAATGTTTACAATCAACAGAC
ACAGTAAGATCATTTATAATTTTGAACTCTTCAATTCCATAattaaaaat
tcattaaatttgattctCGCGGAAATATTAAAACTAGGAATTTTTCCTAA
AACCATAGGTGTTTTGCCACTACCTCtaggaaaataaagaaaaactattA
GGGAAAACGAAtccttttcgaaaaaaatcatttccagccaaaaatgccgg
aaatatgccggaaaaaacgtttttttggcattttctcgagatttcatcat
tagttttttcagattttttgcacaaagatgcgtattagcaatgcccaaaa
gatggcagagtccgatttttgagaaaaattattttccggccgaaaatgcc
ggaaatatgccggaaatcgccgtttttgcagattttcatcagactttttc
cttatatttcgttgttttttcatacaaaaacattatcaatagcaatgtcc
acgatcaagcatggttcaattgtcgNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNtttcttgaatttctcgagctgtacttt
atatttttttatgaaattttgcacactgatgtaaaatgacaatacctaaa
aagtgacggagcccgattttaaaaaaacatttttttctggccgaaaatgc
cggaaaaacgccgaaaaaactggttttttagcattttctcgagattttat
cattagttttttctgattttttcctcGAAGATGTGTATAAATATTGCCCA
AAACATGTCCTActccgaaaatgctggaaatatgccggaaatcgctgttt
ttctggattttcattgaatttttcctcataattggttgttttttcattca
aaaacattattaattacaatgcccaccatcaagcatgtttcaattttcaa
taaaactgatttttgaagccggaactatttaaaaatcaccGGAACAACTT
ATTTTCaacggaaagacagtatttcttgaatttctcaagctgtactttat
atttttttatgaaattttgcacaccgtaaaaaacgtttttttacattttc
tcgaattttcaccttgatttttttctgatttttttgcataaagatgtgta
ttcgcaatgctcaaaacatggctgagttcgatttttgagaaatttttttt
ttccggttgaaaatgccggaaatcgccgtttttgcagatNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttttgcagattttca
ttagattttttccttgtatttctatgtttttcacacaaaaacattattga
taacaatgctcaccatcaagcatgattcaattgtcaataaaactgatttt
tgcgaccagaactttctatttattttttccctccAACCCttcctctcccc
ccatcaacaatcaatgatgaatttattatatatatatataaattttacaa
tcAAAATCTATTTCTAGAAAAAAGATTGGACCTAGAACCAAGTTCAGTGA
ATTGGTTTTAAGTCGATCTGCCAAGTTTCTTGCCTAGGGAAATATTACAC
AATTGGTCAATTGAAACATTTCCATTATCAGTCACCTGATTGAGAAGTGA
CTTTGCTGGTCTACCTCTTCTAACATTTTTATCATCGTTAAAAGTTAAAC
ACTTAacattgcgttatgcattttcactaaacgctatattttctgactga
tttttttctcctcacattgctatctaacttttatcatcaggtaggtccat
tcagcatctagcttgttatgTAAAAATTGTTGTTGTCAGCGGCTTCTGCA
TGATGGAAATTTATGCATGAAATTCATAAATTATTATGATCATtctataa
ttatttttctttttttcagaaatcataTGGACCACTCAAGGTTTGTTGAT
AATTATTTtgttaacaatttttttttctaattcttaTGGTATTTCAAATT
GAATAATCTCATTTTGTTCTAAACACTTCGTCAATTTTTAACGTTGCTAA
AAAAAGATTCTGATCTATTTATTActtatcatttttttttcaggatgaAG
ACAgaatatttacaaatttataTGGAAGACATGATTGGAAACTTAAAGGT
GCAATGGCAAGGGTAGGTAACTAAATTGGTGTGCAGCATTATGTACCCAA
TGTACTTCAGGGAAAATGGTTTCACCTTGATTGACTGATCATTACTTTTT
AAagtgaatacaccttttcgaccgtagttgcGCGGTCAGCCGcatgccac
ttaattatttaattatccccctaaactcgatccaagacacctttttctat
tgtctctaggtgcgaaaaaaggattgggacggttttagtgggataaagta
gacaaaaaaatgcctgcgtggcaattggtggctacggtcgaaaaggtgta
tacatGTGTTAGACCAAACAACTGGTTATAATTCAGTGCCTATCTTAGCT
ATACTTTAGCCCTAATCATTTAACATGTAAGCCCTTTCTCAGCTGTCAAT
TATTAATAACTTTATAGGAAGCTTCgagattttctaaatttctgtTTAAT
ATatatttggctggaattttatcACTTTTACACCATATAAGTGCTACCAG
GGAACCAACAATAATACACATTTCGAGACAATTCTTATCATCAAAGGCTT
ACTATAGTGCCAATATAGGAAAAGCACAATGACCTCAAATTTAACCACTT
ATTAATGGAGGACTCACTCTTCCATTTTTCAGGGAGACTggtacaaaaca
aaagaaattatagtCAAGGGTCATGATTGGATTCTTGATGAAATCAAAAC
GTCAGGATTACGTGGACGTGGTGGAGCAGGTATATTGAACTTTTTGATTA
TCAAATAATATTAGACATGGGGTTAAATGACAAAGTAGGCTACAACAAAT
TTAGAttaacttttcttttctttctggcAAGAGCCAGTAAACCCTATAAA
TTTTATAGAGAAAGctaatattcatgatatgcaccactgcaatgacttca
cgaacaaattatgcaacttttctgtcgtttttttccacccaatacgtcat
tttttctattgttaaaGTGACGTATTAGGTGGGATATTTTAAAAGtcctc
agaagactctccagtggtgcatatcatgaattgaacgGCATTAGCGAAAT
GCTAtttcaaaatacaatttttccaTCCCACAATTAGAGCGGAATGAAAA
TTTCCATGCTATTATTGACTAACCTCAACCTTTAAATGaccaatattatt
tttttgaacatttttgcaGTGTGACAaggaaattatttaaaactcATTTC
TATGATAAAGTTgtaaatacactcttctcgagatgcataaatttattgtt
gtcctcgttttcaaacagatttcgttgtaatgaaattatacatttaaacc
aatttaaattcccaaaaggcaaacattaactctaaaacaaaagtacatga
aattcaaaatgtctcatgagttgtaaacaacacaattatcattgtgaata
tgcaattttatagcaatgaaatctgtttgaaaacgaggacaacaataaat
ttatgcatctcgagaagagtgtatttgtatgttttattttttatatcatA
GGTTTCCCTACTGGATTAAAATGGAGTTTCATGAACAAACCAGATGACGG
TCGTCCAAAATATCTCGTTGTCAACGCTGACGAAGGTGAGCCAGGCACTT
GCAAAGATCGTGAAATTATGAGACATGACCCACACAAATTGGTAGAAGGA
TGCCTGGTAGCTGGCCGTGCCATGGGCGCCCGCGCCGCTTATATATACAT
CCGAGGTGAATTTTATAACGAAGCGTCTAACATGCAGGTAAGCTCTATAT
TGTATACAGTTATATAatccaaaatgttgttttttgttgaaaacctCTAC
AGGTCGCCTCTAAcccagtgaaaatttcaagcactcttttgtggcCGTTA
TacggccaaaatactcaattttgAATTCAGTTTTAAAACTTTACTATGTG
TCAGCAAAGTAGCAAGAATATGTAAGAAGGTGggcaaaatcaaatcaatc
cttgaaaataaacttttcatCCAAGAAGTCTTTAGACAAATTTCCGTACT
CCCAGattaaaaaaagaatctttGTTAAATCATTATAAGAAGTTTATTTA
TTATTCTGAGGATAAGAGGATTATCGCAGTTGACTGACTATCTAATAGTA
ATCACACAGTAATTTCATTCTTTGCTTTTACTTCTTAGGTTGCCATCAAC
GAAGCATACAAAGCTGGTTTCCTTGGTAAGGATGCATGTGGAAGTGGATA
CGATTTCGATGTTTACATGCACCGTGGTGCAGGAGCGTACATTTGTGGCG
AAGAAACTGTAAGTACTCTACCATAAGCATAAGATCTCGCCTTTTTGCTG
TTTGCAGGTCAACATTTATATATGCTTGAGCTTTTTGGGAGAATATTCAA
TAAAGCTGCCTCGTTTATGGAAACAAAGCAACAGACTCAATCATAGAAAG
TTATTAATCAAACATATTCAAGTAGGGGAGATGTATTTTGTACCACTGTA
TTTTAAACTCCTATCGCTTATGTTATCCTTCACTTTAGGCACTTATTGAA
AGTTTAGAAGGTAAACAAGGAAAGCCACGATTGAAGCCTCCATTTCCAGC
TGACGTCGGTGTTTTCGGATGTCCCACCACCGTCGCTAACGTTGAAACTG
TCGCCGTCGCTCCCGTAAGTTTACAATAACACACCTTTCAACCCTTGACG
CCTAAAAGAGATAAGGCCTAAGATTACTTTGAAGGAATGACGGAGAAAAT
CAAGGCAAGACTTCAGACGTCAACCCTACTTGGTAAAGATTAGTGTATAT
TGATCAATAAAATTTGTGGAATGATCAATACAATTGAATGATTCTCTCGG
ATAATTTTCCGTCACTTAAAAGTTCTAAATCTTGCGGAATTTTCGCATTT
AATTTCCCCATTTGGTCAGGGAAACCAAATACTTGTAGTATCGCTTACAA
AAGTTTATCTTTTCTCAAGCTTGTATCACATGCGCACAATAAATCATCCA
TAACAAGTTTCCCGCAATATAATATGGCTGTGAGCACTGCTCTATAATCC
TAAGAACTAAACTTTATGCGCCAACTTTGATTGAAGTTTTATTGAAAGTG
GTGCCCGCAAACCctgggtatataaaggtcagtcgGAAATATCGCTCTCG
GTACATTTTCACCGgtattgagtagtgctaccattatgGCCAGGGCTTAT
AAAATGTCAGTTGCTGGGAGTTGAATAAAACTAATATTAAATAAGGACAA
TTATTACTGCAAAATGCAACCGGTGCACTTATTATGACGTTATTTCTATA
CGAATTATTATTCTTATACCATAGGAAATTTGCCGTCGTGGAGGAAGTTG
GTTCGTTGGTATGGGCCGCTCACGAAACTCAGGACAAAAGGTAATCTCAG
CCAGGGataaatattaaatgagcttttgaccGCGGCGATTGGCAATCGGT
GAAAGCAATCGCCAAAATCAAACGTCAATCGTATACATAAACAATGTATA
GACATTAGAACCGACTTGGTTTCTTTTGAAGTAAAAAACAACGCAGTTTT
GATTGAtttggctgaacaaccaggtcagatctTCACATTCGCCATATCCC
TTTAGACCAGAGTGTGGTATGCGCAGAATgaatgatctgttatgagataa
gacaaaaggttgaaattgactaattaatttttgggaacaAAGTGTTTGTT
ATGAAGTTGTTCCATCCTGTATCTTCTTATCTTGATAATCGActattcct
tgggtgaataccggggggcgttttttttattttttgaaaattttcaattt
taagggcttggtcacgagtttttgccaaaacgaggctaaaactttggggc
aggctggagacttcaaaaatgatcagatttggccgaaattttgcacactt
gatacTTGGGCGAATCCCTGGTGgcggttttttcattttttcaaaatttc
cattttcaagggcgtggtcacgagtttttagttgaaattggttacaattt
tacaattgggcctacgaatgatttaaaaacactgaagttgagcccagtgc
ggttagcacgttcgacagtctTGATAATCGACtattagaccatgttcaca
cgctACATATCCGTTTCGCTCTGAAACGAAATGAATCCACTCTATTGGCT
AAATTCAAGTTTTAAATCACTTCTGACCaatttaaaatacattcattttG
TTTTGGAGACGTAGCGTGTGATTCAGTTCagtttcatttcaaaacattcg
aaatccCGCTGGTTGGCAACCAGAAAAGGAAACAACATGGTGTAGTCAGC
TCTAAAACTGGACAAACTTCCTATCATAGAGGaagcccgatccagtcaag
CGGTTAGGAATCAGTGATTTAAACcacataaattatttttctcttcttta
gCTTTTCAACATCTCTGGCCACGTGAACAACCCGTGTACCGTCGAAGAAG
AAATGTCTATCCCATTGAAAGAGCTCATCGAACGACACGCTGGTGGTGTC
ACCGGTAAGAATCTTCTACAGTGATAAAAGTTCTTCTATCTCAGATGGAT
TTCTAGCGAGCACCTCATTAataaccgggatttttcatctcgtttcttag
tgagttccactttgacgatctTCGAAAAAtaaagcctttcaagtgttttg
acgcaaattccatttttccctactgcaagggctttaaaatgacgtcaaaa
aatcgaatgtttggagtccgaaaacctgggctcaaaacattcgaaaaagt
tgcaaagtggaatagacgttaattgcgtagaaaaaacgcgggtgacatCT
AGTATAGGCTAATGGATTATCGTCTCAGTGAAGTATATAAAGCTTTTTGC
GTCTCAAGCttctgcataattcaccaaaacttcaagaatatgtgcttatt
tgctgtgtaaaatccattttacGTCTCAGATGTGCaaaaaactttggttt
aacCACGCCACGTCTTATTTTTCTGCAGCATTATAGCCTGTACCCGCGTA
TAGTGCAGAGGGGTTCAAGGTCCGTTCCTAAAATTTTAGGGTCCACCACT
TGAGTACTCCCACTTGATAGTTGATTTGCCAATCCTCGTAACAAGGGATT
GAAATTTgacataaaattttgatttaaaaaaagctcTGTTCGtagacttt
tttttctttcctccaTTTCAACTTGTGCTCAGGTAGGTAACTCTCAATAT
AGAATTAGAGATTTTTCAGAGACTTTAAATTACATAGTTCGGAGAAAGTT
CCTGctttaagaaatttttagaagCCACTTTTTTAGTCCCAACTAAGCCT
ACCCCCTCCTCTCAAAGTTCTGAATTTCAAGGTCCCTGGTCAATTTAGgc
ctaaaaaacaaaaaattacatttaaattcaaaattgaaaaacttgacTGA
CTTGACACAAGTTCGATTAGCTACTACTGTAGAAGCTTAGAAAATCAAGA
GTGACGTCAATAACGTGAATGTTTCGAGCCAAAGAACCTTGACTCTTGGA
TAATACGCTACGGCATATGTAGAAAAAACCGAGACGTCTCGAAGAGGCTA
TATTGTTTGTCACCAATAAGTCCTAATCTACCGCACACGAATTTACAAAC
GTGTAACAAACACAACTGGGTTGTGACGTAATCAACATGGTCGTCGATTT
CGGGTGGTCTCTTCTAGTACATTATCTAGCTTTAGCTTAAGGTTTAGTGA
AAATGTGACCTCTGTAGTTTGTTTGTCGGTTTGTGTTTTATTTCAAGAAT
ATATTTATAATCAGTTCCGAATATCGTGTTTCAATTTTATAGCTCTAAGG
TTTATTTGATCTGAATTATTGTATAGTCTTATATAAAGATGATACGCAGG
CAAATTTCCAgcgtttttatttcaaagattgaGTTTGAATTCAGTTCGAA
GAACAAAATAATCAACCCAGGCTCTGTTTAATTAGTTGGGTActattaaa
acacaaagaattaaccTTAGAATGGCCTTTTCTGTTAATTAGGGTCTAgg
acatcaaatttttgtcaCGATTCTCATGGCTCAGGAAAGGCCTGTGAATT
TGCCTGACACGTAATCTACAGTCGATTGCCAATTGGTGAATTCTGAAATT
TCTTTTGCAGACTTTCTGTAGAAAGTTAGCGTTTTGTTCCTATGATATAC
GTCGGAAATTAAGCAACGAGTTTCTAGTGCTTCCCGCGTTAGAATTATTT
GCAAGACATTCTcagatttttttcttaaatcttTCTGTTGCATAACTTTC
GCGTGTAATCTTTTACATCCAGAAACCTCCCGGTGTTGCTGTCAGCAGAA
AGGTCAGACATAATAAAACTTCAAAGACACACAGACAGCTTTTGTTATTG
CTCACTGCATGTCATCTTAGAACCTTCGTTTTAATCTGAGCTTTTAAACC
TAGTGATTAAAATTGTTTCCTTAtttttctgtgagattgcataACTAGAC
CCAAGAAGCATAGAAGTTATTACAGAACGCAAAATTGTTCGAGCTCAGAA
AATTTCGAGTTTTGGTGCAATaataaggtattgttaactgaaaatCACGT
AAAGCTTCTTCGAGTTAGGGAAACATTACAGTTAAAGAGGTAGATTACtg
taatttctttaaaaatctaaagaatcctaTTGTTACAAATCTTCTTGATC
AGAGTTACATAAGACAAGTGTTAGTCAGCAAGAACATGTGACAATCACTG
CTAAGCTCTATGCCAAGCTCCTCCTCCACTATTTTCATTTAAGAAGTGCT
TTCCATCTTTCCTTTGGCAACATATGAGATCCGCTACATCAGCAGTTTGT
AAACTGACTAATCCGGATGTATTTTTTCGTACATCATTTCTGCTGATTCT
GCAATTTAAAgttgattttacattttctttttttgccatgTTTTACCATC
CTTGACATCCTACTGTTTTATGAATATGGCGCCAGAAATACTTTAACTCT
GGCCTCCTTGAAATCAGAGCAATACGTTGACACCTTCCCGAAATGTCGCA
ATGTTCATGACGTATTTTTAGTAACGAAGACAACCGGAATTTCCAGTTAT
CTAGAAATTCCACTGCTTTATCATTCAATNATTTTAGTAACGAAGATAAC
CGGAATTTCCAGTTTGCTATAAATTCCTCTGCTTTATCATTCAAACTTCA
CGAGAAACGCTCAGTTTTTCGGTATCCCTCTACATAAAAGAATTGTGATT
GACCCTTTAAACGATCATTGTAATGACTAGTCTCTTAAGTGTTGTTATTT
TTGGAAACAAGGGGAATCTATACACCCTATAAACACCCCCTTACTTCGTT
atatattgtatattttttgtttaagaaTATGGAGCCGTTTTCTAGTTGAA
CGACGCAAGTGATCTAAAGATCAAGTAGCTAATAATTGAAAAATAGGTTC
TACAATTGCTTCAATAAAACTGTTCATATTAAGATTAGAGCATTAGCCAG
CCTTAAAACTCTTACCATTGGGACTGTGTGAAAgccatttttatgttttt
tgtgtTTGTTGGAAATCTCGAAACGAGGTAGCAAGAAATTCGGATACAAA
TGACAGTCGACTTATGACAATATGTcctaaatgaacaaaaaatgcCTTAA
GTACAGTAGAAACTACTATGTAACCCTTAATCATGTTAACTATACCGATC
TGGTCAAAGGGATTCGAACAGTTTTTCTCGTCAGCTTTTTCTCAGGCATT
TCTCGAACAATGTGATAGGTCTGTTGCTGAAGACATTCTTCTCACTGATC
GTCTATATTTAGTTTTAATCTAGGCTAGACTGTTACTAGTCTAGTAAACC
CTCCTTCTACAAGACATGCTATTGTCCAGAGTAAAATTGTGAGCAAGTAA
TTACTACACTCACAAGAACAGAAGACGGCGGTTGATAcaatttcttacaa
aaaaatgttCATGTACAAAATCAAATCTTTTGTTATTTGTTCAAACAACA
AGAAAGATGAGAAAATattccataaaaaaattatcgagTGTGACACAAGA
AAgtcattttttatgagaaaaacatttttagtcaaGTGTTGACATAAAGA
TTAATGACAGAATGGAGAGAGAGAAAACACCGGTCAGCTAACGTACAGCC
ACTAAGTGATTCTTAGGTTACAACAAGAGACAGTATATAAAGAGGTGGCT
GAGTGTTGGTTCGAGTTTCAAAACCATACCAATTGAACTGCGAGACGGTC
AGTCTTTTTTACTGCAGAGAACGAGGACTGTTCTGACcagaaaacaaaaa
catgcaTTGGTTAGCCTGTGTTGTTTTAACCATTTTGGTTATCGACCGAA
TCCAGGCTACTGAATTACCTGAAGAAAACCTATTGGTTCCGGACTTGATT
GAATATTGGGGATATCCTGCCGAATCGCATGAAGTCCAAACCAAAGATGG
CTACCTGTTGACTTTACACCGTATTCCGTATGGTAAAGGACATACGGACA
CAACCCGGAAACGACCGGTATTCTTTTTACAACACGGACTCCTTTGTAGT
AGCTCGAATTGGGTTACCAACCAACCACACTTGTCTCTTGGATTCATGCT
CGCTGACTCTGGTTATGACGTATGGATGGGTAATAATCGAGGCAATACTT
ACTCCAAGAAACACGTGACTTTACCGGTTGACAGCAAGGCATTCTGGGAT
TTCTCGTTCCAGGAATTCGCAAAATATGACATGCCCGCCATGTTGGGGTA
CGCCTTAAATGTGACCGGAAATAAACAATTGTACTACGTCGGACACTCTG
AAGGCACCATGATGATTTTCGCCGGTTTGAGTGAAAGTGAGGAGCTACAG
AAAATGATTAAGACAGCCTTTGCACTAGCCCCTGTCGCGCATCTGGATAA
AGCCTCATCGCCTATTACTTATCTATCATCTTTCGAAACTGAAATTGGAG
GATTTTTCGGTTTTCTCGGCGTCCGTGAGTTTATGGCTTCTAGCTACTGG
ATACGTAAACTAGCTGACTTGACTTGCTCTTTCGATGAGGGCGCCCTTTG
TGGAAACTTCCTTTTCTTGATTGCCGGTTCAGACAGTCGAAACATGAACG
CCACTCGCACGCCCATCTNTTCTTGATTGCCGGTTCAGACAGTCGAAACA
TGAACGCCACTCGTACGCCCATCTATTTCACACACACGCCCGCTGGAACA
TCAGTTAAAAATATGCTTCATTTCTGCCAGCTCATCGAAGCAGGGCGTTT
CCAAAAGTACGACTATGGGTGGGCGAAGAATCTTTACCACTACCACTCAT
TGAAGCCTCCTCAATACCcaatcaaaaacatcaaaacggAAATCGAATTT
TTCTCTGGGGGACGAGATACCCTCGCTGACCCTCAAGACGTTTCATGGTT
GACTACGCAAGTTAAAAGTCTCACCAAACATCACGTTATCCCGGAATACA
ATCATTTAGATTTCATTTGGGGCGAATCAGCACGCCGTAAGGTCtataag
aaaatcattaaatctGCTTATCGTAAAGATGGCATTTTACGACGATAAAT
CATTTCTTTTTGTGACTGGCAGAAAACTGTTTTTGATTGGATGAAACTTG
TTGAAAAAGTAGATATAATCAACGGACAAGACTTTGATATCATGTTGCGG
ACAATATTTAAATGGTACAAAAAAAACGAATTGCAAAACTCTACGATCTC
ctacaaatatttttgtttctgtgGTAGTTGGTTCCCTGTAATATGTTTTT
GCACCAACATTAGATGTATAATGTATGTTAAAAAAGTATTATAAAAGTAT
ATTgaataaaaggaaaattaagGAGGAAAGCTTCGccacttttataaaaa
tctttaTCGCAACTCCCTTGAAGTAGACCTGAAAATATTGTCACTTTCCC
CCCGACAAATCTTTCCCCTTTAAGGTACAGTACTTTTAAACATACGTTGT
GATCCcttattttcaagtttttttcacACTGATTTCACATACAAGTTCCG
ctcttcaaaaataaattacagTGCATAACTCGAACAACATCACGAGGAGC
GCAAATTTGTTCGgtttatggaaatttcgagttagaAGATGAGATtggtt
tataaggtattgttaactaaagagaccagaaaacttgttcgagttaagga
gatattcgagttatagaaattcgagttatggagctGCCACTCTATGATAC
GATGATGCGAGATTTGTAAGCCCTTTTCTAATGTCATGATAGATCTCATC
TTTCGGGTGTCTCCTTTCTTTACTTTTGgattgattttcgaaaaaatttc
gtaATCCTAGAAATGGGTAACGAACGTGTCTGTCAGTGCCCTtgtaaaat
tatatattttgaaaaataattttcttacatCAAGAGTCTATTTCGAGAGT
CTTTTTACTCCTTTTTTTTGTTAGAACAATTAGGCTCAAAACGAATTCag
cataagaaaaaatttgtctcaaagtatcaaataaaacaaaaacagccAAG
CCTTAACAAAAATGTGTAGTTTGggtcttccagaaaaaattggaATATGG
AGCGTGGAGGatataacttttttttcgaaatttaaccaacgaacattgtg
acttttgactcGCCGGACAACAGGTCTAACTTCCCGAACACCACCATCAG
TTGATCCCGGACAttcaaattacccccaaacagagcaagtttcccccccc
ccccggacaaggcacattttgtagatttttcaccaCCCCCCTTGGACAAT
TATATCCTCTACTCAACATGTACAAACTGGAATGACCCGTTCTTATAGTA
TTGTAATGTACAGGCTTGCAATAGACATCACTTACCCCTTTACACTCCTT
CGTCATTTAGTTGTCACTTGTCAACTCTTGTTTGAGTTTAGACAGCAAAC
AATATCAATTATTTACATTTATCACATATTTGCGAAGGGGCTTTCGAGCA
CCAAGGAAGCTAAAGATCTAAATCCTGTCTTAAGTGATTTTTCATCTCTT
TGATTTGATcaaattttccccttttttgtTTACCCTGGAATAAGGCTGTT
GTGcatgttttgttttaaaaaccaGGCtagtttgagggtaattttgaacg
TCCAGGGTCAACTGTTGCTTGTTCGGGgagttagacctgctgtccggcga
gtcaaaagtcaaaattgTCTTTTCTTAAGATATTGTTTTTTGATTCGTAG
GTGGATGGGACAACTTGCTGGCCATCATCCCCGGTGGATCATCTACACCA
CTCATCCCTATAGAGTAAGTAGTGTTCACACACGTGCATTATTTTATTTC
AACTCCTATTTTTGGTTTACGACAAAAGGTCTGTTTTTTGTCGTGGatca
aattttacattttaatgtcAATATTGCTTGTACTTCTCTATCTCTGTAAA
CTTTTAACCTGGGAGAGGTGGGGGCACTGAACTTGACAGCCGACGGGGAC
CTGCTGTATGAGtctgaaaagtggaccctgtcggATATGAATATAGGATA
TATCGActttttcaccctgaaaagtggtgaaaatgactaaaattagACGA
CTAATTTTGACCCTGAAAAATAACCAAAGTCGACTGAACACGCTCAATTA
AAATAGTTAGAGATCAGCGAATTAAACATTAAAATTATGTTCTCTTTCTG
TGTACAGTGTCTGCAGTGACGTCATGATGGATTTCGACGACTTAGTTCGA
GCACAAACAGGCCTTGGAACGGCTGCCATCATCGTTATGAACAAGCAGGT
ATAAAGCTATTTGATATTTGCAGTGCTTTATGGGTAACTTTGACTCGGCG
CAAATCATGAGGGCTTGTACTGTTTTAAAATACTTATGCAATCTCGTTTT
AAAATCACTCAGGAAAATCGGGTCGAGGCTCAATATGCTTAGACttcgat
ttgttgattttctttgggttcatgaaagtcggaaaattgattcgATTCAA
GGaatgaaagttttgaaaaagtaaccCTTAGAAAGGTCAGCGTTTCAGTA
AAGCTACACGAATTTTTTCGTATTTCAGCTTAGCtcattatgcttatttt
ttaccgaCTTTGCGCCTAAGTATGCTtaaaacgttatgcttataaaaaaa
gtgtatattcATAAGACAAGAAATATAGAAGCAAGATTCTATTCTCTGCA
TTCACAAAGCCATTGTCCCCATTTCCTTAATGACACTGTGGATTAGTCTT
ACTGGTGATGTATTGATAGAGCTCAAacgttaatttttgaaaaataactt
ctTTTTTTCAGAGCGACATCGTCCGTTGCATTGCACGTCTCATAGAGTTT
TACAAACACGAAAGTTGTGGACAGGTAAGATTGAAGCTTTGAAATGAATA
CttgggggtactaggtttgcgagatgacgcGAATGTCCGGACCAAAGATc
taaaatcgacccttagagagactgaatttcggaaatttcgtccatttttt
aacgtttttgccaccttagagagactttctcccaaaatttcagccaaaaa
tttCTAATATCCCTTTCAGGgagtcgattttttattttcgccaacATACG
AAAGGCTCGCACATATCCATTTTACCTAAGTACCTGGATGAATACTGACC
TCCCTTACTGTCAAGTCGTGCATTTTGATTATTGAAGTACACATTAgcag
cgcttctttgatgccagtaaacattcaaaaagatttttgttttaaaaata
ctCCGCGGATAAAGCCTTTCCGAATTCTCATTGGGGATCAATCTTGCGGA
TGACAACCAAACCCTCAAAATTTTATCCGATTGAAGTAAATCGACTTCTA
TCTTTCGAACAATTTGTCTGACCCCTTTATCAGTAACCAAACCAATGTAA
ACCAATTGTAAACCAATCATGGTAACtcaaaacaaatttattgagttcCC
CGTCCTTGTTCGAGTTAAGTATAGAGGCTAGATGTTcttatttctctttt
tattcattcaaaaaaattagtgTACACCATGTCGCGAGGGAGTTGGATGG
ATGAACAAAATCATGGCTCGATTCGGTAAGCATCTTCATACATTTGTATA
CCTGCAGCTAGAGTTTTTGTGAACTTCTAACGTGAGCTTGTCTGTCAAGC
AATCAAACCTTCACCCCCTATTATCCAGTTTTAGGGCCAAAAGCCTCCCC
GATTCCAAATTGATGCGCGTTTTAAAACAACCACACCATGGAACTTCACT
CATTTTTTATATGGAGTTGGGTGAGCCTTTAAGTTTTTGGAATCCTGCAG
CATTTTAAGTATTGATTTCCTAGGAATGGAAATGGAGTTCCAACAAGGGG
TATATAGTTTATTTCTGGAATgtggaaaagcccaattcacTCTCAAATAC
TGAtagtcaaaacatttttttagtattttaaatTTGACGGTATTTTGCAA
AGAATGGTAGGCTTTTTCTTGACGaatgttatatttttattttcagtcgA
AGGAAAAGCTAAACAGGGAGAAATTGATATGTTATGGGTAAGTCATCAAA
TGTTTCATTGTTTTATAACTTATCGCCGCGAGTATAGCACTTTCAACCAT
ATATTAACCTCGAGAATTATTATAATCGATCAGTGGATTTCTATTTATAG
GGAACTTAATCGCTTGAGCCACTTGTGAAAGAAAATACCGAACAGTTGAG
CTCTTCATCTTTTCACCGAGAATTATTGAAACATGATAATGGTTCCACGG
TTGACTATTTTTTCGATTTATTCCTATTTCGATATTATCATATAATGTGG
AATTTATTTTTGCGTTTTGCAGGAAGTGAGCAAACAGATCGAAGGACATA
CAATTTGTGCCCTCGGTGACGGTGCTGCTTGGCCAGTACAAGTAAGTTCT
CATTGATGATGTTTCAACTTGTTTTTacacattttataagaacaatttta
taagaatgaggCTCAAGatcgccaaaaaaataagaacactttaagaacaa
tgctgaggctgaaattactcaatttcaatcaattttggGGTCGCAGTaGT
ATAAagtataacgcctaaaatacctcacttGCATCAAGAACAGCCGAAcc
gcagcaaaattttactggttcttataaaaaaattgtaatgtGATTATATA
AATCTATTAAGATTGGAATTgcacaaagaaaaaatgttaTACGTTCATAT
GCTTTTTTATGTTATGAGCTTAATCTTTGTTTTTACGGGGTAAAAATCTA
TATTTCCAAGTTGGTTGGTCGGAATTTAGCCCCGTGTACTTCTAAAATTG
TTCCTGTAGAAATAAGTATTTGGAGCGAGAAAATTATGCAATAAAAATTC
TCTGTTGATTTAAAACTAGACTAgcgtctacttctgactgaactttgctt
tttgatgattttgatggcgctTAGTCCAGTGAAATAGACTAGGGGATTTc
gccatttttaaaatttttcacttttttttcaaaattagaagaaaacGATA
TATTCAAAAACCCcatcaaagtttatgaaactataataaaaaaattagaa
atacatcaaaaatttgaagaaaaacaattgGTCTATTGGTCATTGTTTTc
tgttggtttttttttttttggttttttgaaagtcgtcgttctttttgtct
atttttaataAACGTAGGGTTCTTTAGATTAAACCCCCTCCTTTCTTTTA
TTTACAGGGCTTGATCCGTCATTTCCGACCAGTACTGGAAGCCCGTATGA
ACCAATATCAAGACGATTTCGATACAAAAGTGGCTGCTGCTGTCTAATAC
TTTAttattaataaaatattgaatattgatCAAATGTATTTTCTATCTAT
CTATCATCTCTATCTCTCGACTAATTGCGATGGTTTCAAAACTCGAAGTG
TAAATAAGTTActgtattatttttttgtttttgctca

Coding sequence (CDS) from alignment at sc0000001:107381..124517+

>TCONS_00000004 ID=TCONS_00000004|Name=TCONS_00000004|organism=Clytia hemisphaerica|type=CDS|length=1362bp|location=Sequence derived from alignment at sc0000001:107381..124517+ (Clytia hemisphaerica)
AGCGGAAGACTTTCATTGGCTATCTCGAAATGTTTACAATCAACAGACAC
AaaatcataTGGACCACTCAAGgatgaAGACAgaatatttacaaatttat
aTGGAAGACATGATTGGAAACTTAAAGGTGCAATGGCAAGGGGAGACTgg
tacaaaacaaaagaaattatagtCAAGGGTCATGATTGGATTCTTGATGA
AATCAAAACGTCAGGATTACGTGGACGTGGTGGAGCAGGTTTCCCTACTG
GATTAAAATGGAGTTTCATGAACAAACCAGATGACGGTCGTCCAAAATAT
CTCGTTGTCAACGCTGACGAAGGTGAGCCAGGCACTTGCAAAGATCGTGA
AATTATGAGACATGACCCACACAAATTGGTAGAAGGATGCCTGGTAGCTG
GCCGTGCCATGGGCGCCCGCGCCGCTTATATATACATCCGAGGTGAATTT
TATAACGAAGCGTCTAACATGCAGGTTGCCATCAACGAAGCATACAAAGC
TGGTTTCCTTGGTAAGGATGCATGTGGAAGTGGATACGATTTCGATGTTT
ACATGCACCGTGGTGCAGGAGCGTACATTTGTGGCGAAGAAACTGCACTT
ATTGAAAGTTTAGAAGGTAAACAAGGAAAGCCACGATTGAAGCCTCCATT
TCCAGCTGACGTCGGTGTTTTCGGATGTCCCACCACCGTCGCTAACGTTG
AAACTGTCGCCGTCGCTCCCGAAATTTGCCGTCGTGGAGGAAGTTGGTTC
GTTGGTATGGGCCGCTCACGAAACTCAGGACAAAAGCTTTTCAACATCTC
TGGCCACGTGAACAACCCGTGTACCGTCGAAGAAGAAATGTCTATCCCAT
TGAAAGAGCTCATCGAACGACACGCTGGTGGTGTCACCGGTGGATGGGAC
AACTTGCTGGCCATCATCCCCGGTGGATCATCTACACCACTCATCCCTAT
AGATGTCTGCAGTGACGTCATGATGGATTTCGACGACTTAGTTCGAGCAC
AAACAGGCCTTGGAACGGCTGCCATCATCGTTATGAACAAGCAGAGCGAC
ATCGTCCGTTGCATTGCACGTCTCATAGAGTTTTACAAACACGAAAGTTG
TGGACAGtgTACACCATGTCGCGAGGGAGTTGGATGGATGAACAAAATCA
TGGCTCGATTCGtcgAAGGAAAAGCTAAACAGGGAGAAATTGATATGTTA
TGGGAAGTGAGCAAACAGATCGAAGGACATACAATTTGTGCCCTCGGTGA
CGGTGCTGCTTGGCCAGTACAAGGCTTGATCCGTCATTTCCGACCAGTAC
TGGAAGCCCGTATGAACCAATATCAAGACGATTTCGATACAAAAGTGGCT
GCTGCTGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000003XLOC_000003Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000004-exon-sc0000001-1491911889:107381..107433TCONS_00000004-exon-sc0000001-1491911889:107381..107433Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1510915933:107381..107433TCONS_00000004-exon-sc0000001-1510915933:107381..107433Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1575043694:107381..107433TCONS_00000004-exon-sc0000001-1575043694:107381..107433Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1491911889:109500..109520TCONS_00000004-exon-sc0000001-1491911889:109500..109520Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1510915933:109500..109520TCONS_00000004-exon-sc0000001-1510915933:109500..109520Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1575043694:109500..109520TCONS_00000004-exon-sc0000001-1575043694:109500..109520Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1491911889:109674..109742TCONS_00000004-exon-sc0000001-1491911889:109674..109742Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1510915933:109674..109742TCONS_00000004-exon-sc0000001-1510915933:109674..109742Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1575043694:109674..109742TCONS_00000004-exon-sc0000001-1575043694:109674..109742Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1491911889:110363..110459TCONS_00000004-exon-sc0000001-1491911889:110363..110459Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1510915933:110363..110459TCONS_00000004-exon-sc0000001-1510915933:110363..110459Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1575043694:110363..110459TCONS_00000004-exon-sc0000001-1575043694:110363..110459Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1491911889:111232..111467TCONS_00000004-exon-sc0000001-1491911889:111232..111467Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1510915933:111232..111467TCONS_00000004-exon-sc0000001-1510915933:111232..111467Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1575043694:111232..111467TCONS_00000004-exon-sc0000001-1575043694:111232..111467Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1491911889:111869..111988TCONS_00000004-exon-sc0000001-1491911889:111869..111988Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1510915933:111869..111988TCONS_00000004-exon-sc0000001-1510915933:111869..111988Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1575043694:111869..111988TCONS_00000004-exon-sc0000001-1575043694:111869..111988Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1491911889:112219..112344TCONS_00000004-exon-sc0000001-1491911889:112219..112344Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1510915933:112219..112344TCONS_00000004-exon-sc0000001-1510915933:112219..112344Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1575043694:112219..112344TCONS_00000004-exon-sc0000001-1575043694:112219..112344Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1491911889:113005..113070TCONS_00000004-exon-sc0000001-1491911889:113005..113070Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1510915933:113005..113070TCONS_00000004-exon-sc0000001-1510915933:113005..113070Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1575043694:113005..113070TCONS_00000004-exon-sc0000001-1575043694:113005..113070Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1491911889:114082..114184TCONS_00000004-exon-sc0000001-1491911889:114082..114184Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1510915933:114082..114184TCONS_00000004-exon-sc0000001-1510915933:114082..114184Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1575043694:114082..114184TCONS_00000004-exon-sc0000001-1575043694:114082..114184Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1491911889:120831..120894TCONS_00000004-exon-sc0000001-1491911889:120831..120894Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1510915933:120831..120894TCONS_00000004-exon-sc0000001-1510915933:120831..120894Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1575043694:120831..120894TCONS_00000004-exon-sc0000001-1575043694:120831..120894Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1491911889:121288..121378TCONS_00000004-exon-sc0000001-1491911889:121288..121378Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1510915933:121288..121378TCONS_00000004-exon-sc0000001-1510915933:121288..121378Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1575043694:121288..121378TCONS_00000004-exon-sc0000001-1575043694:121288..121378Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1491911889:121892..121954TCONS_00000004-exon-sc0000001-1491911889:121892..121954Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1510915933:121892..121954TCONS_00000004-exon-sc0000001-1510915933:121892..121954Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1575043694:121892..121954TCONS_00000004-exon-sc0000001-1575043694:121892..121954Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1491911889:122601..122655TCONS_00000004-exon-sc0000001-1491911889:122601..122655Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1510915933:122601..122655TCONS_00000004-exon-sc0000001-1510915933:122601..122655Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1575043694:122601..122655TCONS_00000004-exon-sc0000001-1575043694:122601..122655Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1491911889:123077..123117TCONS_00000004-exon-sc0000001-1491911889:123077..123117Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1510915933:123077..123117TCONS_00000004-exon-sc0000001-1510915933:123077..123117Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1575043694:123077..123117TCONS_00000004-exon-sc0000001-1575043694:123077..123117Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1491911889:123403..123471TCONS_00000004-exon-sc0000001-1491911889:123403..123471Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1510915933:123403..123471TCONS_00000004-exon-sc0000001-1510915933:123403..123471Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1575043694:123403..123471TCONS_00000004-exon-sc0000001-1575043694:123403..123471Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1491911889:124288..124517TCONS_00000004-exon-sc0000001-1491911889:124288..124517Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1510915933:124288..124517TCONS_00000004-exon-sc0000001-1510915933:124288..124517Clytia hemisphaericaexon
TCONS_00000004-exon-sc0000001-1575043694:124288..124517TCONS_00000004-exon-sc0000001-1575043694:124288..124517Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000004-proteinTCONS_00000004-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:107381..124517 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
124.133	142.06	230.177	120.492	154.159	133.701	145.601	153.226	111.794	120.784	112.864	117.161	95.7197	94.1897	87.4784	101.042	213.582	230.483	72.8499	82.4185	171.041	184.793	95.5646	117.125	220.265	196.201	96.2046	107.59	83.3617	69.4361
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019575Nuop51_4Fe4S-bd
IPR019554Soluble_ligand-bd
IPR011537NADH-UbQ_OxRdtase_suF
IPR011538Nuo51_FMN-bd
IPR001949NADH-UbQ_OxRdtase_51kDa_CS
Vocabulary: Molecular Function
TermDefinition
GO:00515394 iron, 4 sulfur cluster binding
GO:0051287NAD binding
GO:0010181FMN binding
GO:0016651oxidoreductase activity, acting on NAD(P)H
GO:0008137NADH dehydrogenase (ubiquinone) activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0010181 FMN binding
molecular_function GO:0051287 NAD binding
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H
Blast
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BLAST of TCONS_00000004 vs. Swiss-Prot (Human)
Match: NDUV1 (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Homo sapiens GN=NDUFV1 PE=1 SV=4)

HSP 1 Score: 753.051 bits (1943), Expect = 0.000e+0
Identity = 363/439 (82.69%), Postives = 400/439 (91.12%), Query Frame = 3 
Query:    9 RLSLAISKCLQSTDTKSYGPLKDEDRIFTNLYGRHDWKLKGAMARGDWYKTKEIIVKGHDWILDEIKTSGLRGRGGAGFPTGLKWSFMNKPDDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAAYIYIRGEFYNEASNMQVAINEAYKAGFLGKDACGSGYDFDVYMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCPXXXXXXXXXXXXPEICRRGGSWFVGMGRSRNSGQKLFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWDNLLAIIPGGSSTPLIPIDVCSDVMMDFDDLVRAQTGLGTAAIIVMNKQSDIVRCIARLIEFYKHESCGQCTPCREGVGWMNKIMARFVEGKAKQGEIDMLWEVSKQIEGHTICALGDGAAWPVQGLIRHFRPVLEARMNQY 1325
            R+S+  S    +    S+G LKDEDRIFTNLYGRHDW+LKG+++RGDWYKTKEI++KG DWIL EIKTSGLRGRGGAGFPTGLKWSFMNKP DGRPKYLVVNADEGEPGTCKDREI+RHDPHKL+EGCLV GRAMGARAAYIYIRGEFYNEASN+QVAI EAY+AG +GK+ACGSGYDFDV++ RGAGAYICGEETALIES+EGKQGKPRLKPPFPADVGVFGCPTTVANVETVAV+P ICRRGG+WF G GR RNSG KLFNISGHVN+PCTVEEEMS+PLKELIE+HAGGVTGGWDNLLA+IPGGSSTPLIP  VC  V+MDFD LV+AQTGLGTAA+IVM++ +DIV+ IARLIEFYKHESCGQCTPCREGV WMNK+MARFV G A+  EID LWE+SKQIEGHTICALGDGAAWPVQGLIRHFRP LE RM ++
Sbjct:   15 RVSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453
The following BLAST results are available for this feature:
BLAST of TCONS_00000004 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDUV10.000e+082.69NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
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