TCONS_00000127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000127
Unique NameTCONS_00000127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000127 ID=TCONS_00000127|Name=TCONS_00000127|organism=Clytia hemisphaerica|type=transcript|length=1496bp
ATATTATCACACCCTATCTTTCTAATGTAACTTAAGATATCTTTagaaga
tattttaaatatttatttttaataaatagaATTGTTTGCAAAAAGAATGG
TAAAATACACATCTTTGGAAATCAATTCAAATGAAGCCACAACTGTTTAT
TTTGACGAATGTGAAAGGAAAGATGCTGCTGGAAAACCTTCATATGGACC
TTGTGATATTCTCACGTTAATTTTAATATACACCATTTGGTTTATCACAC
TACCTTTTACGTTCTGTTGTAGTTTCAAGATAATTCCACAATGTCAGAGA
GTGATTGTTTACAGACTTGGCAGAATATTACCTTTGAAAGGACCAgGTTT
GATCACAGTGGTTCCATGCATTGATAAATTGAAAAGAGTGGACATGAGAA
TGAGAGCATTCAAAGTTCCCCCACAAGAGATCATGACAGTGGATAATGGA
GTATTGAAAATAGGGGCTGACGTTCAATACCGATATGTCGATCCTATACT
AACACAAACAATACAGGACCTCGATCACTCTTTGAGAGTCAGTGGTCAGG
CTTCTTTAACTTCAATCATCTCATGTAATGATATTGCATTCGTAAAACAT
GAAAAGCAGCTTTTACAACAAAGACTACAGAGTCATTTGAATAAAGTTGT
GTCAGCTTGGGGTATTGAAATAGCAAGATTTGAAATGGAACACTCGACAG
TATTGAAGGAGCGAGGTGGTATCACTCCCTCCTCtcaaaatgatgatgat
gaagtcGACGGCGCTGAGATGATCATGAACCTTATCAAAAGCGTTGTTTC
TCCCGAAGGAAACTTGTTTTCCGGTCTCTCCATACCTCACGTTAGTCCAA
CAGATGTCTTACCTAACTACACATCAACACTTTCCTCAAGTACACAGAAA
GTGGCCGCGCCAGCGTTACTTACTGCCGCCGAGCTATTTTCAATTGCTAA
AGGAATAGTAGACGAGCCTTTGTGTCAGCAAATTAATGCagtatttcaat
ttcaaatacAATATACAGACCCAAGTACGCGGACCTGGACCGTCGACGTC
AAAAATAGCCCCGGATTCGTAATAGAAGGTCCGGTAGCAGGTTTTCCCGA
TGTTGTTTTTAAACTAGAGgaacaaacttttcaaaaaatcttttacggAC
AATTAACGCCTCGGCAAGCTTACATGAACAGTCAGCTAACGTTCAATGGT
AGCTTGGCAACTGCAATGAAATTAGAATTACTAATCAAGAGGCTAAAAGC
TATGTAAATTTGATTAATATAGAATCTTAGTTATAAAGATAATGTACATA
CTAGAGGATTTTTTAGttactttatttatttgatttgtcGCACTATTTCG
ATATTGAAGATACACCATCTTTTACGCAGTAAAGATTTCGTTTTAGATTC
TAGCCTTCATAGGATGAAGGTCCTTCTTTTACTATTCTTGTACTATTATG
CGCCCAATCGGGTTTTGTAAATAAGTAAATGCATTCGAAAAGTGGG
Run BLAST on NCBI

protein sequence of TCONS_00000127-protein

>TCONS_00000127-protein ID=TCONS_00000127-protein|Name=TCONS_00000127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
MVKYTSLEINSNEATTVYFDECERKDAAGKPSYGPCDILTLILIYTIWFI
TLPFTFCCSFKIIPQCQRVIVYRLGRILPLKGPGLITVVPCIDKLKRVDM
RMRAFKVPPQEIMTVDNGVLKIGADVQYRYVDPILTQTIQDLDHSLRVSG
QASLTSIISCNDIAFVKHEKQLLQQRLQSHLNKVVSAWGIEIARFEMEHS
TVLKERGGITPSSQNDDDEVDGAEMIMNLIKSVVSPEGNLFSGLSIPHVS
PTDVLPNYTSTLSSSTQKVAAPALLTAAELFSIAKGIVDEPLCQQINAVF
QFQIQYTDPSTRTWTVDVKNSPGFVIEGPVAGFPDVVFKLEEQTFQKIFY
GQLTPRQAYMNSQLTFNGSLATAMKLELLIKRLKAM
Run BLAST on NCBI

transcript from alignment at sc0000001:2597044..2606175+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000127 ID=TCONS_00000127|Name=TCONS_00000127|organism=Clytia hemisphaerica|type=transcript|length=9132bp|location=Sequence derived from alignment at sc0000001:2597044..2606175+ (Clytia hemisphaerica)
ATATTATCACACCCTATCTTTCTAATGTAACTTAAGATATCTTTagaaga
tattttaaatatttatttttaataaatagaATTGTTTGCAAAAAGAATGG
TAAAATACACATCTTTGGAAATCAATTCAAATGAAGCCACAACTGTTTAT
TTTGACGAATGTGAAAGGAAAGGTATGAAACTTTGTTATAAACAACTTTC
AGttgcagtgctgcaaataacggcaaGTGACCGGTAGCGGTAATCACCGG
TTATTTTGTAGTTTCTACAGACCATTCTTAAACTTACTTTTTCGTTTTGC
CCGGTTAAAGTTTGAAGGCTATAAGGCTTCTTTCGTAAATATTAATCAAG
TTaccttaaggtatgtgtacaccttttttccaattttttgtcaaaaaaat
ttttttcactcaaagtggaagaaaagttactggatttcattttggtaaaa
tcgcgatcttaaaatctttttatgatccagagttataaccatttaaattt
caaaacaaagttcgtcttatgatggattatttactcaaataaattgtctc
tttcggaaacaacaaagacaaaagagagaattcagctgatgttcattctc
acctctattgaagagtaatatttttgacacatttctctgattactcaaat
aaacagcaatcatctcgttaaaaatttcaaattgatgtagaaaaaaacga
aattttaccacaccatactacttttaacgaagttaaagNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNcggaaaaacggtatttcttgaatttcttgagc
tgtactttatattttttcatgaaattttgcacactgatgcaaaatgtcaa
tacctaaattgtgagggagccagattttcgaaaaaaattcatttctggct
gaaaatgccggaaataggccggaaatcgccgtttttctagattttcatcg
gactttttccttataattggttgttttttcattcaaaaNcttacagataa
ctgaaaaagtcacatttaaatttactttttggacctaccccggtggggta
gaggtcctataaattaaccgatgtccgtccgtctgtccgtccgtccgtcc
gttcgtccgtctgttaccaNgattaatagcaatgcccaccatcaagcatg
tttcaattttcaataaaactgatttttgaagccggaactattttaaaagt
cgccggaacgacctattttcgccggaaagacagtatctcttgaatttctt
gagctgtactttatatttttttatgaaattttacacactgacgcaatatg
acaatatctaaaatgtgacggagcccgattttcgaaaaacatttttttcc
ggccgaaaataccggaaatatgccggaaaaaccggttttttttcgaattt
ttatttttagtttctgattttttgcagaaagatgcgcattcgcaatgctc
aaaaaatggccgagttcgatttttgagaaaaaaatttttccggtcgaaat
tccggaaatcgccgtttttgcagattttcattgggttttttccttatatt
tctatgtttttcacgcaaaaacattattgataacaacatcaagcatgatt
caattgtcaataaaactgatttttgcgaccagaactttctatttattttt
tccctacaacccttccctNNNNNNNNNNNNattgggaacatagtatcgaa
attattttttcaaaattcaaaagctatgggtgactttaacttctttgaag
taggtaaggttaaaattcttaagattttaattatatcttgcccagttttt
taaaaccagctgaaacttttaccattagaaagagaatattattggctttc
agaaaatatatacttttgatatataaaaatttgttgttctaaagatatga
tcaattaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNtaccttaaaggaagaaattttggcgggaatttaa
tttggcggatggccgaaaaagttttttcagagggaatttaatttggcgga
tagctggataaattaattttgacgggaatttaatttggcagttgcaggat
atttttggccaaaagcattattaaataagcaaaaaaacctgtttttggGC
TTGAAAAAGCACGAATTTGGGGAACGcgcaaaataaattaaatttggcgg
gaatttaatttgacggatgaaggaaaaaattaattttggtgggaacttaa
tttggcggattatGGCTAAAACTGCCAAATCctgcaaattttctttccgc
caaaatttcttcctttaaggtaattaCATTTCTTTAGTTCCTCATACTTa
ccaaattataaaaatctAAGACTCCAAAATTTTCTAAGGGGGCCCCAAGA
CCCCctgatcaaattattttcaCTACAAATTaaattaccggccaactgaa
atttccttatATGCAGCACTGATTTGTGTCTTTTATCATAATCAGCTTAC
CtatgaaaacttgaaaatagCTTAGTCACAGTAAGAAGTTCTACCATTTA
CACTTGCCACTGAAACCCACAATAACTTTTTGACCCTCTTTTTGAATTAT
TACTTCTTTTAGTGAAGCTCTATatctcttatttttcttttcaaaaaatg
tcaaaacggTATTGCTCATTGTTTTAGATGCTGCTGGAAAACCTTCATAT
GGACCTTGTGATATTCTCACGTTAATTTTAATATACACCATTTGGTTTAT
CACACTACCTTTTACGTTCTGTTGTAGTTTCAAGGTAAGAAACAACttat
taccttattggaactaatttttgcgggaactaattttcgcggtcgtaaaa
aaaatatccaaaaaattgcatttcgtgggttttaattttcgcggttttcc
ctttttttggacaaatttctttcattttcctagggatttttcaaattttt
cgataaaattggaaaaaattgtattttgcaggaattaattttcgcggttt
tccctttttttggacaaatttctttcattttcctagggatttttcaaatt
tttcgataaaattggaaaaaattgtattttgcaggaattaattttcgcgg
tttttgactctcaaaatttttcacgggatcaaattttcgtgattttgatg
aaaaaccgcgaaaaacgctaaaattaaaacccgcgaaaattagttccaat
aaggtacactgTTTTTTTCCGAAATTGTATAACTAAAATACGCTTCAGAT
TAAAATGTCACAAAATTTTATGTTGAGTATCTTTACGACTTCTAAAGATG
AATTTAACGATAAGCCAGAAAGTGGAAAATTCGAATTCTTATTATTTTAA
CAGATAATTCCACAATGTCAGAGAGTGATTGTTTACAGACTTGGCAGAAT
ATTACCTTTGAAAGGACCAggtattgtttatttttttaataatatgGTAA
AGTATTACTATTATTTTCTACCCACATAGTTTGATTATTAGTCCATAGTC
TCATTTAGGACATAAGACTATATCCAGGATAAACTGATGTTTTTACGAAT
TTGATAGCTCTGAGTTAGcatgataaaaaatgaagtctTTTTAATGTGTC
TGTACTTTGAAGTGAATTGTACTTTGTAATTCCAAGTATTTTGGTTTTTC
CCATTTCGTTTAAAAAGCTAATTAACATTGATTATAGTCACAATCGATAc
aaccttttttataagaacaatcttaaaagaacaatgctcaaaaattccaa
aaataagAGCGGTTTTAAGAACAATGCCAAACCTGGAATGGCTAACCTTT
TAGCAGGTTTAGGTTCAAATcagttatttttagaaatgccACATCTTTGT
CCCTAGAAATAGGAGAAGGACAATTTTAGGCTCAAGGTACCAAAAAAAAG
GATGGTGAGCCtcattcaaaatttattggctcttaaaaaaaagagtgtaa
atAGATTATACCAGATTTTCTCTTCTAGGTTTGATCACAGTGGTTCCATG
CATTGATAAATTGAAAAGAGTGGACATGAGAATGAGAGCATTCAAAGTTC
CCCCACAAGAGGTATGTCGATTCacagtttttataagaacaagttttTCT
TCACAGTTTTCATAAGTTTTTTATAGACACTATTTAATGTTCAAAGATAT
GAGCGAAAGATTTTGTAAATGAATGGTGTTTTCCTTGtctgaaaacaagt
tttaagttttttaatgatcttatagactttttttaatatttcaataTGAT
ACTTTCCTTGAGAACGGTCTGAGGTCGAAACTTGTTGGGGAAATCAAATT
ACGATAgacgcattctttttcaccgctCAACACAATATGATACTTAATTT
TATGATTCACACTAAAAAGGGCTTTTCAAATCAGCATTcccttgaaaatt
tttcttctgGGCCAgattattctcaaaaaaaaagtaaagatgAATATACA
TGATACATGATACAAGAAGTATCGAAACGTCaagaatgaacaaaattttg
tttttcgtctttattttttttcttcagcatTCCCTTAGCAAATTCAGCAA
ATCTGTCCTAtggttttggtcaaattttttataaaaacttgatcttctaa
aggtttttttaattCCTTAAAACACGTAAATAATTTGTTGTGATATTAAG
GCTTTTAGGAGGCTACTCAAAGAATAGTTCTGATTTTTAGTGGAATCATT
TTTTGTGTGTATTTGCACATTTGCTTGTTatagtaaaaagaaaattaaaa
cccgtATTTCTATTAATttataaaacagaaaaatgaagcgactgcttcag
tagaaattttcgtcatctttcgtgaTATTTCATCATCATAACTTGTTATA
ACTTATtatgctgatgaagtcacgaaagatgacgAAGATTTCTACTTAGA
GCAGTCGCtacatttttctgttttataTATGCTGCTTCTGCATTATAATC
CGTATTTCTGTTAATTTAGATCATGACAGTGGATAATGGAGTATTGAAAA
TAGGGGCTGACGTTCAATACCGATATGTCGATCCTATACTAACACAAACA
ATACAGGACCTCGATCACTCTTTGAGAGTCAGTGGTCAGGCTTCTTTAAC
TTCAATCATCTCATGTAATGATATTGCATTCGTAAAACATGAAAAGCAGC
TTTTACAACAAAGACTACAGGTAAATAAACCTATCCACTCCCAACCAAGG
GCATAAATTAAACttctaccatttgcttacaataaatatttttccattct
cGGCGTTTCGCGAGCTTACATTTTGAGAAATCCTAtatcaaatatcattt
tttaatgagcgTGACAACCACCTACGAACTACTAAAATCGGATTTGAGAT
TTAGTTTTTACCatcttcgcgaaaataaatctcGCATGATTGTTTGAGAT
CACTGACTCGTAAAAATTAAATCACGCAAAAATTATTCCGATTAAAATAC
GTATTTTTGAAATAGAACATCCACTAGCACGTACGGTTTCAAAGATGGAT
TTGAGGGAGTTTATGATTTTACTGATTGTAGCAACAATATTGaggaatac
tttaatgggataaactttcgcggggattaaattttacggttgggcctatc
cgcgaaattcaaaaatttcgcggggacttaatttcgcgggttgCACTATT
GAgtgtcaatattttcacgattttgtgacttttactgtcaaatcatgcat
tttggttgttaaaatacacatttttggcgcttctttgatgtcagtaaaca
ttcaaatagtatttgtttgacatattttgagttttgtttagaaatatttc
gcgcaGATGAGGCCCTTcgaaatttccattgggacttaatttcgcagatt
ttcgcggatgacacccaaatccgcgaaatccgcgaaatttaatccccgcg
aaagtttatcccattaaagtaatgcGTGCAATTTTGATCTGtcgttttta
ttttctaaagttatataatttcaaataatttcttGGATTGTTCCACGAGA
AATTGTTCAGAAAATTTGCGAAATCTCACTGACCTCTTATCAGGGCTTAA
CCTATGAAAAGTGAATCGCTGTCAATTTTTCTTGAACATCTATTTTTATG
CTttaaaaattcatgattttttatttttttcgtagAGTCATTTGAATAAA
GTTGTGTCAGCTTGGGGTATTGAAATAGCAAGATTTGAAATGTAAGTAAA
ACTATTTAAGCTGTCTCTGAAAGTTTATGTGCGTGTTTACATTGTATATA
TGtcactaaaatagaaaaatgaaaatgatataaaCTGCTGGTGTAACTTA
TGGCATGTCCAAAAAGGAAATAGGTTTGGCGCAAAAAAACCGCCGGGGCC
TTATTCAGCATGGTCATTTATacgtcaaaagaagcgtattaggTTGTAGA
CAGGTAGATTTCAGAACTGGCTGTTAATAGAccatttcataaattacgtc
acgaacatcacttgccttgtatccaaacaattaccatggtgattatgtcc
cttgaggcatcaaatgattttttttatgaatagaaagtagttttgataaa
atccgctaggagttaatcaccatggcaataatttcaaaacgaggcaagtg
atgttcgtgaagGTCTATCAATTATTACATTTTGGGATATTGGATTTTTA
TTTCCGGACATGCTATAGGTTGCACGAGTGGCAACATTAGGAATTTGATT
TTGTGAATTGGAGCAAAAACCCTCAACAAGGTGAAAATTTCGCGTCTAGG
CAAGTCTTAGCTGCACAGgacaaataagaaaatattcatTCATCATGTCT
TGTTCGGCCCTACTTACAACAACAGGCATCAACTATGTCAGCCGAGTTTG
ATAGTATTCCTTTAGAAACTTTTAGTTTGAATCAGCCATTCCATAAAGTA
ATAAGAAAAGACAACAagttttattctattttcagcaaaatgaatgcgga
aaataaaataaaactttttgtatTTCCTTTAGAAACTGTTTactgatttt
ttctgatttttttaaggATTTCACCAAACTTGAATTTTCTAAGAATGTTC
TTTCGTTCGACAAAAATGTCGTGTACTGATAAAGTGCCCTCAAGTTGGCG
AAATTTGTCTTTCTTCTGACTGTAGATTCTAAATCCGACTTACTTTTCAG
GGAACACTCGACAGTATTGAAGGAGCGAGGTGGTATCACTCCCTCCTCtc
aaaatgatgatgatgaagtcGACGGCGCTGAGATGATCATGAACCTTATC
AAAAGTATACCATACAAAATGCTGTTATTTTTGTCTGGGCTATCGAACAC
CTTTCGAAAATATGCCATACTAATTATCGTTATGGTATGCAgaggggttc
taggtcccccagaaaatttagcccccccccctaaaaattaGGTACCCCCT
GACATAAAACCTCTCAGCCCCCAGTAGAATAACCTAAGGTATNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNgggggggggggttcataccaTGGTTTGACATA
CAAAATTACTGTTATTTCTTTCACATCATTTTAAGTCCATTCACGGAGAA
ATTGTCACGATTTTTTGTCACAAGGGAAAAATGTCCgttaattttgaaag
ttttgtatgaaaattttgtactttaaggattttttcacaaaaatattcct
aatttATTTCTATATTCCTTTTTTAGGCGTTGTTTCTCCCGAAGGAAACT
TGTTTTCCGGTCTCTCCATACCTCACGTTAGTCCAACAGATGTCTTACCT
AACTACACATCAACACTTTCCTCAAGTACACAGAAAGTGGCCGCGCCAGC
GTTACTTACTGCCGCCGAGCTATTTTCAATTGCTAAAGGAATAGTAGACG
AGCCTTTGTGTCAGCAAATTAATGCagtatttcaatttcaaatacAATAT
ACAGACCCAAGTACGCGGACCTGGACCGTCGACGTCAAAAATAGCCCCGG
ATTCGTAATAGAAGGTCCGGTAGCAGGTTTTCCCGATGTTGTTTTTAAAC
TAGAGgaacaaacttttcaaaaaatcttttacggACAATTAACGCCTCGG
CAAGCTTACATGAACAGTCAGCTAACGTTCAATGGTAGCTTGGCAACTGC
AATGAAATTAGAATTACTAATCAAGAGGCTAAAAGCTATGTAAATTTGAT
TAATATAGAATCTTAGTTATAAAGATAATGTACATACTAGAGGATTTTTT
AGttactttatttatttgatttgtcGCACTATTTCGATATTGAAGATACA
CCATCTTTTACGCAGTAAAGATTTCGTTTTAGATTCTAGCCTTCATAGGA
TGAAGGTCCTTCTTTTACTATTCTTGTACTATTATGCGCCCAATCGGGTT
TTGTAAATAAGTAAATGCATTCGAAAAGTGGG

Coding sequence (CDS) from alignment at sc0000001:2597044..2606175+

>TCONS_00000127 ID=TCONS_00000127|Name=TCONS_00000127|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at sc0000001:2597044..2606175+ (Clytia hemisphaerica)
ATGGTAAAATACACATCTTTGGAAATCAATTCAAATGAAGCCACAACTGT
TTATTTTGACGAATGTGAAAGGAAAGATGCTGCTGGAAAACCTTCATATG
GACCTTGTGATATTCTCACGTTAATTTTAATATACACCATTTGGTTTATC
ACACTACCTTTTACGTTCTGTTGTAGTTTCAAGATAATTCCACAATGTCA
GAGAGTGATTGTTTACAGACTTGGCAGAATATTACCTTTGAAAGGACCAg
GTTTGATCACAGTGGTTCCATGCATTGATAAATTGAAAAGAGTGGACATG
AGAATGAGAGCATTCAAAGTTCCCCCACAAGAGATCATGACAGTGGATAA
TGGAGTATTGAAAATAGGGGCTGACGTTCAATACCGATATGTCGATCCTA
TACTAACACAAACAATACAGGACCTCGATCACTCTTTGAGAGTCAGTGGT
CAGGCTTCTTTAACTTCAATCATCTCATGTAATGATATTGCATTCGTAAA
ACATGAAAAGCAGCTTTTACAACAAAGACTACAGAGTCATTTGAATAAAG
TTGTGTCAGCTTGGGGTATTGAAATAGCAAGATTTGAAATGGAACACTCG
ACAGTATTGAAGGAGCGAGGTGGTATCACTCCCTCCTCtcaaaatgatga
tgatgaagtcGACGGCGCTGAGATGATCATGAACCTTATCAAAAGCGTTG
TTTCTCCCGAAGGAAACTTGTTTTCCGGTCTCTCCATACCTCACGTTAGT
CCAACAGATGTCTTACCTAACTACACATCAACACTTTCCTCAAGTACACA
GAAAGTGGCCGCGCCAGCGTTACTTACTGCCGCCGAGCTATTTTCAATTG
CTAAAGGAATAGTAGACGAGCCTTTGTGTCAGCAAATTAATGCagtattt
caatttcaaatacAATATACAGACCCAAGTACGCGGACCTGGACCGTCGA
CGTCAAAAATAGCCCCGGATTCGTAATAGAAGGTCCGGTAGCAGGTTTTC
CCGATGTTGTTTTTAAACTAGAGgaacaaacttttcaaaaaatcttttac
ggACAATTAACGCCTCGGCAAGCTTACATGAACAGTCAGCTAACGTTCAA
TGGTAGCTTGGCAACTGCAATGAAATTAGAATTACTAATCAAGAGGCTAA
AAGCTATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000069XLOC_000069Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000127-exon-sc0000001-1491911889:2597044..2597215TCONS_00000127-exon-sc0000001-1491911889:2597044..2597215Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1510915933:2597044..2597215TCONS_00000127-exon-sc0000001-1510915933:2597044..2597215Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1575043694:2597044..2597215TCONS_00000127-exon-sc0000001-1575043694:2597044..2597215Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1491911889:2599871..2599977TCONS_00000127-exon-sc0000001-1491911889:2599871..2599977Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1510915933:2599871..2599977TCONS_00000127-exon-sc0000001-1510915933:2599871..2599977Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1575043694:2599871..2599977TCONS_00000127-exon-sc0000001-1575043694:2599871..2599977Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1491911889:2600547..2600613TCONS_00000127-exon-sc0000001-1491911889:2600547..2600613Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1510915933:2600547..2600613TCONS_00000127-exon-sc0000001-1510915933:2600547..2600613Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1575043694:2600547..2600613TCONS_00000127-exon-sc0000001-1575043694:2600547..2600613Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1491911889:2601172..2601254TCONS_00000127-exon-sc0000001-1491911889:2601172..2601254Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1510915933:2601172..2601254TCONS_00000127-exon-sc0000001-1510915933:2601172..2601254Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1575043694:2601172..2601254TCONS_00000127-exon-sc0000001-1575043694:2601172..2601254Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1491911889:2602163..2602363TCONS_00000127-exon-sc0000001-1491911889:2602163..2602363Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1510915933:2602163..2602363TCONS_00000127-exon-sc0000001-1510915933:2602163..2602363Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1575043694:2602163..2602363TCONS_00000127-exon-sc0000001-1575043694:2602163..2602363Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1491911889:2603329..2603384TCONS_00000127-exon-sc0000001-1491911889:2603329..2603384Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1510915933:2603329..2603384TCONS_00000127-exon-sc0000001-1510915933:2603329..2603384Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1575043694:2603329..2603384TCONS_00000127-exon-sc0000001-1575043694:2603329..2603384Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1491911889:2604344..2604447TCONS_00000127-exon-sc0000001-1491911889:2604344..2604447Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1510915933:2604344..2604447TCONS_00000127-exon-sc0000001-1510915933:2604344..2604447Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1575043694:2604344..2604447TCONS_00000127-exon-sc0000001-1575043694:2604344..2604447Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1491911889:2605470..2606175TCONS_00000127-exon-sc0000001-1491911889:2605470..2606175Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1510915933:2605470..2606175TCONS_00000127-exon-sc0000001-1510915933:2605470..2606175Clytia hemisphaericaexon
TCONS_00000127-exon-sc0000001-1575043694:2605470..2606175TCONS_00000127-exon-sc0000001-1575043694:2605470..2606175Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000127-proteinTCONS_00000127-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2597044..2606175 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
55.3254	50.7521	22.9095	17.2223	13.1226	9.78217	12.865	14.2339	8.54847	9.00611	7.54064	5.98502	5.0967	5.78799	6.40208	8.95338	9.53987	9.16296	5.47976	5.15156	6.90302	4.95308	38.434	31.7812	12.4602	13.5505	9.78988	7.62424	19.5511	22.4133
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001972Stomatin_fam
IPR001107Band_7
IPR003033SCP2_sterol-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
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BLAST of TCONS_00000127 vs. Swiss-Prot (Human)
Match: STML1 (Stomatin-like protein 1 OS=Homo sapiens GN=STOML1 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.910e-51
Identity = 112/358 (31.28%), Postives = 186/358 (51.96%), Query Frame = 1 
Query:  202 CDILTLILIYTIWFITLPFTFCCSFKIIPQCQRVIVYRLGRILPLKGPGLITVVPCIDKLKRVDMRMRAFKVPPQEIMTVDNGVLKIGADVQYRYVDPILT-QTIQDLDHSLRVSGQASLTSIISCNDIAFVKHEKQLLQQRLQSHLNKVVSAWGIEIARFEMEHSTVLKERGGITPSSQNDDDEVDGAEMIMNLIKSVVSPEGNLFSGLSIPHVSPTDVL--------PNYTSTLSSSTQKVAAPALLTAAELFSIAKGIVDEPLCQQINAVFQFQIQYTDPSTRTWTVDVKNSPGFVIEGPVAGFPDVVFKLEEQTFQKIFYGQLTPRQAYMNSQLTFNGSLATAMKLELLIKRLK 1248
            C  L   L + +  +T P +   + KI+P  +R+IV+RLGRI   +GPG++ ++P ID  +RVD+R RAF VPP ++ + D  VL +GADVQ+R  DP+L+  T++DL+ + R++ Q ++T  +    +  ++ EK  +  +L   +N V  AWG+E+ R E+    VL+     +P+  N D  +   ++ ++ +   +    N  +G   P   P D +        P       SS ++  A  LLTA + F      + E L  Q+ A +QF +     +   + +D+    G V  G   G PDVV ++ E   + +   +L P  AYM+ +L   G LA AMKLE +++ LK
Sbjct:   55 CHGLISFLGFLLLLVTFPISGWFALKIVPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVELAVEAVLQPPQD-SPAGPNLDSTLQ--QLALHFLGGSM----NSMAG-GAPSPGPADTVEMVSEVEPPAPQVGARSSPKQPLAEGLLTALQPF------LSEALVSQVGACYQFNVVLPSGTQSAYFLDLTTGRGRVGHGVPDGIPDVVVEMAEADLRALLCRELRPLGAYMSGRLKVKGDLAMAMKLEAVLRALK 398
The following BLAST results are available for this feature:
BLAST of TCONS_00000127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STML17.910e-5131.28Stomatin-like protein 1 OS=Homo sapiens GN=STOML1 ... [more]
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