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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000171 ID=TCONS_00000171|Name=TCONS_00000171|organism=Clytia hemisphaerica|type=transcript|length=2215bpRun BLAST on NCBI protein sequence of TCONS_00000171-protein >TCONS_00000171-protein ID=TCONS_00000171-protein|Name=TCONS_00000171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=665bp LDIQWNRFYYTREDVGLIRKNIPALKYLKAAFNPWMKADSLRLRCIGRLRRun BLAST on NCBI transcript from alignment at sc0000001:601427..678068- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000171 ID=TCONS_00000171|Name=TCONS_00000171|organism=Clytia hemisphaerica|type=transcript|length=76642bp|location=Sequence derived from alignment at sc0000001:601427..678068- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:601427..678068- >TCONS_00000171 ID=TCONS_00000171|Name=TCONS_00000171|organism=Clytia hemisphaerica|type=CDS|length=1998bp|location=Sequence derived from alignment at sc0000001:601427..678068- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000171 vs. Swiss-Prot (Human)
Match: LRRC9 (Leucine-rich repeat-containing protein 9 OS=Homo sapiens GN=LRRC9 PE=2 SV=2) HSP 1 Score: 484.182 bits (1245), Expect = 1.389e-152 Identity = 273/625 (43.68%), Postives = 411/625 (65.76%), Query Frame = 2
Query: 2 LDIQWNRFYYTREDVGLIRKNIPALKYLKAAFNPWMKADSLRLRCIGRLRSLLSMDSEDVTQEETNTALRLAAGSRIAYITVLANSRTEKEPLRTLNLSNTTDVLITQSMNKPVKLSEDDRQWLSRVTCLRLDGQHLSKISNLEKLENLKWASFNDNDITKIEGLDNCKDLIELSLANNCLSKIDGIHHLKKXXXXXXXXXXXXXXDGIDFASLNNLRFLAFDNNFVLSLNGLQHSTSLLEIYAGNNKLQELRDIFYLKNIPTLIILDMMGNPLVKECNNYRLFLIYHLQSLKALDGIPVNFTEGGMAKDTFGGKLSTDFIAEKLGHSNFLELCELDLPHCNIRTVDLNSSELFKNLRSLNLEQNNLSCFGGIVNLHNLKVLCLNHNHIESIFPK------------------KSGTNSPQVISTNKNASSDDSTNQFKAVLENLEVLHLGYNGIANLAALELGRLVSLKALFLQGNEINKVDGLDGLYELRELVLDKNKIKAFTENSFRNQWKLAELHVEENRLRDLSNLEPLTCLNRLYVGLNRLQYGTDLEKLECLPNLFELSVIGNPIARRMSHRMMLIFRQPNLLSIDGIPVSNEERSKAEIHFLEQQGGIQALQALSNS 1822
LD+ WN+ + ++ ++ K+ +L L NPW K +LRL IGRL++L ++ +++EE A++ AG+RI +++L +S T++E R L++ + +L S P L +L ++T L LDGQHL +I+NLEKLENLKWASF++N++TK+EGL++C +L EL+L NC+SKI+GI + KL L ++NN L+ + F ++ +L L+ +NN + SL+GLQ S +L+E+Y NN + +++ LK + L+ILDM GN ++ NYRLF+I+HL LKALDGIP+ +E AKD FGG+L++D IAE+ GHSNF ++ EL+ +IRTVDL + F+N+ ++NL+ N+L+ F G++ L N+KVLCLN+NHIESI P+ SG + TN++ S ++ ++ +LEVLHLGYNGI NL L+L RL +LK LFLQGNEI++V+GLD L L+ELV+D N+I++F +++F L LH+EENRLR+L L+ L L +L++G N++Q T+LEKL+ + L EL+V GNPI R+M HR MLIFR PNL +DG PV++++R+KAE H E Q +L +++S
Sbjct: 765 LDLSWNQLKKSGNEINMLCKHTTSLLTLDIQHNPWQKPATLRLSVIGRLKTLTHLNGVFISEEEATAAMKFIAGTRITQLSLLRHSSTKEERPRILSIWPSAKILTQVSKLGP-HLHLSGNCYL-KITALNLDGQHLFEITNLEKLENLKWASFSNNNLTKMEGLESCINLEELTLDGNCISKIEGISKMTKLTRLSINNNLLTGWEEHTFDNMLHLHSLSLENNRITSLSGLQKSFTLVELYISNNYIAVNQEMHNLKGLCNLVILDMCGNIIIWNQENYRLFVIFHLPELKALDGIPIEPSETDSAKDLFGGRLTSDMIAERQGHSNFKQMQELNWTSSSIRTVDLIPVDQFRNVCNVNLQNNHLTSFSGLIYLPNVKVLCLNYNHIESIMPRLKPQTHLTSRQLLYQKVPSSGYGQQGISKTNRDIMSSEN---LPPIMHSLEVLHLGYNGICNLIQLQLNRLRNLKFLFLQGNEISQVEGLDNLVVLQELVVDHNRIRSFNDSAFAKPSSLLALHLEENRLRELGKLQSLVKLEKLFLGYNKIQDITELEKLDVISTLRELTVYGNPICRKMLHRHMLIFRLPNLQMLDGSPVNSDDRAKAEFHLAELQAKKNSLIPVTHS 1384 The following BLAST results are available for this feature:
BLAST of TCONS_00000171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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