TCONS_00000255 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000255
Unique NameTCONS_00000255
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3219

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000255 ID=TCONS_00000255|Name=TCONS_00000255|organism=Clytia hemisphaerica|type=transcript|length=3219bp
caGAAAATAGAAAACTGATGTTTATATAAAATGGTTGTGATGGCGGTGAA
CAATCGGTATTGTAGTGACTGTTTAGAATCAGGGGAATTTCTACCCCTGA
GACTTGTCATGATGAATTTGGATAGCGGTCTTTGGATGTGTCCCAAAGAT
GATtgtACATTTCCCTTATCTTCTCCATCCATGCAGTTATACATGGAAGA
AGATTTGACCACTGAACGTGTTTTGCTGTTGACAGGAAACAAAAGTAAAC
AATTAGAGagaCCACCAACTCCAGACTCACTAGTAGCAAGTATTTCATCA
AACAAACAAAGTGACATGTTACAACAAACACAATATGCAGTAAGTACTAC
TTCATCAAGTGGAAGTCGAAAACGTAAACATTCAGATGGTGGCTCATCAA
GCAGATCAACCAAAACAAATAGTTTTCGCAGTGTCAGCAATTCAAACATT
ACAGATCCAATATCGTCAGATTCTTCGAGCTTGATGGCTAACAAAAAGTA
TCCTTCAGTACCTCTATGGGAAAATGAAGAACTGCTGTGCTGGCTGGATT
CAATGCTTGCACTCATAGTCTTGAACCAAACTTTACAGAATTATCCTGAA
GAGTCCAAAGGTACCCTAAATAAATTACTCAGCGAATACAAACATAATAC
TGATATTTACAATGTGACAAAAGACTATGAAACAATAAGAGCAAGCATGC
ACACTTTACGGAAATCGACACTCAACTTCATTCAACCAAAGATGTTATCC
AGCTTCACCGAGGAGGATTCTCCTCTCTTGTCTCTACAGCTTTTAATGAA
AACCAATGCTGAGCTTTATGAAGATTGCGAAGTGGAATACTCGAGTAAAT
TCACTTGTAACCAATGTCAATTCGAAAAAACTGATGGGTTCAAGAAAACC
ATACTGACTCTCCCAGAAGGATATCCAGATTTGAATTTCGTAGAGAATTT
ATACTACAAAAGGAATTGTTACAAATGCAATGCACCAGAGCAAAAGAACG
TTTTCTATATTGAGAAataTCCAGCTGCGTTGTTTGTGTACTGCAGTACA
GGGGTAGGTTGTCGAAAATACTGGAATTGGTTCAACTTCACATCGCCGGC
TGGAGACAATTATATTGTGACGCAAATTGTCCAATACTCTAGAAAGAAGC
ACCACTTCATTTTGTGGAGTTACTCTTACAAAGATAAATTATGGATAGAA
GCTGATGATTTAAAACACCCAGTGGTCCAGTATCAACATGAACGACCCAC
ATGTCGGTCTCATGAGGTCCACTTCATGGTCCTGGAGAAAGTTTCAACAC
TTGAGGAAGcgataaagaaaaatgaacagAAAAATCTTAGCTCCGAGCAA
ACTGGATCCGAAAGCGCACCCGTGACCCCTGAATCCCTGGAATCACCGCT
TTGCTCTGGTAATAGTAGTGTTATTGTACAATACTCTGGGCAATCGAGTC
GCAAAACCTCGCTTTGTAGCAGTGATGGTATTTTACCGAACGGAAGATTA
TTGAATGATAGCGACCGCCCAAGCGAAGGGCGTAAGGATAATCGCGATCT
TCCAGATGATCAACTTCGAAAGAAATCCTTGTTGCACGTACCTTATTACA
AGCCGTTTACAGCACGTTCAAAGCGTACAGCTAGAGAAAGTCCTACAAAT
TACAACCAGAATGCAACATCTTCTCATCTTAAATCTGAAAGCAGTAGCAT
GTCGCACAGTACACCAGCAAAACAGACTGTTCTAAACAACCCTGACATTT
TACAACAAACCACTAAAACATCAGACATAAAGGCGGATCCTACGAACGCG
ATTTTCAGTCAAGCTTTAGCTAACGAACTCGGTGATTTTTATTCGGATCT
TTTAGACCAACAATCTATGGACACTACCCAAGAAGATGGCATGTTTGATT
CGACACAAATTTCCCAGGGAACTATTCCTAACCAAATGTCGTCTGATCAA
TTCAGCTCTACCACCCAAAACCAACAGCAAGACTCTACAATCGACGTTCA
ACAAACTCTAGAACGTCGATTTAGTAACGATGTTGATTCGTTGAGTGATA
TAGTTGATATAGGTACTGCAATCGCCGGAGGTTCTTTTTCAAGTACCGTA
TCTAACGATAAAACTGGATTTAAAGATTATGGAAACCCTTTGAAAAGACT
TATGGAGGAAGAGGAAGATATCAAAGGAGTTTTCCAAGCTTCTTCTGTCA
ATTTACAGATGTTTAATAAGACTGAAACGAATGATACCTCTTCAAGTGGG
TCGCATGTAACACCAATGGATATAAATACTGATTTTGGTGAAATTAAGTC
ACCAACCGAGGACGAACCCAAGGTCGATTTTGCAATCACCATGTCGACGA
ACAGTTATTCTGGAGCGTATTCGGACGTCAAACTGTCTGACGAGGAATTA
GAAGAAATTTTAAACGGGTGATGAGTTAAGAATTGAATCGAATATCTACC
GGTAACACAGTTATGTGTGTATGTCACGTGTATAATAAATCGCATAAACT
GGTCGCTCTTTGTTTGAACGGGAACTGGAAGAGATTAATTCTGATTTCGA
CTCAGAAATTTACTGTAGAGAGTCTCAAAACAGAATGAGAATCAATATGA
CATAAATAGTAGAGGTAAAGGTATAGCGttctacagtatgtggcccccaa
aacgtcaatcaaatttgaaatgtctctcaaatctagaggaaaaaaggttt
tacaaaaatttttgctgcatgaaaagctttaacatctctactttatttcc
tggaagttctttttcaaaattttcaatttcaacaatatttttaaatcgct
taaagatagcttttttctaatggccccaaaaacggaggtttgcaatttta
gcgacttctcgagatatctttaagatatgaatacaaaattttgaccatag
ttttgaaatgtgatttagagggttttgggcataaatttgtttgataaaat
ttttacagtatacccctggttgtcaaaacggtggtttggggcccccaaaa
cgtaggtgtagttaaaattaaattattaagcctagtggtaatagggggaa
ctatgaacatatttgtgttttcccttaaatttacgacccgatggatgtaa
aatttatgatttttataaagtatttcaagattttcgatgatgcaaagtcc
aaactgaaaatttagaaattttcaaaatgacaattttgatttacaacgtc
ttaatcaagtttctgaaaa
Run BLAST on NCBI

protein sequence of TCONS_00000255-protein

>TCONS_00000255-protein ID=TCONS_00000255-protein|Name=TCONS_00000255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=796bp
MVVMAVNNRYCSDCLESGEFLPLRLVMMNLDSGLWMCPKDDCTFPLSSPS
MQLYMEEDLTTERVLLLTGNKSKQLERPPTPDSLVASISSNKQSDMLQQT
QYAVSTTSSSGSRKRKHSDGGSSSRSTKTNSFRSVSNSNITDPISSDSSS
LMANKKYPSVPLWENEELLCWLDSMLALIVLNQTLQNYPEESKGTLNKLL
SEYKHNTDIYNVTKDYETIRASMHTLRKSTLNFIQPKMLSSFTEEDSPLL
SLQLLMKTNAELYEDCEVEYSSKFTCNQCQFEKTDGFKKTILTLPEGYPD
LNFVENLYYKRNCYKCNAPEQKNVFYIEKYPAALFVYCSTGVGCRKYWNW
FNFTSPAGDNYIVTQIVQYSRKKHHFILWSYSYKDKLWIEADDLKHPVVQ
YQHERPTCRSHEVHFMVLEKVSTLEEAIKKNEQKNLSSEQTGSESAPVTP
ESLESPLCSGNSSVIVQYSGQSSRKTSLCSSDGILPNGRLLNDSDRPSEG
RKDNRDLPDDQLRKKSLLHVPYYKPFTARSKRTARESPTNYNQNATSSHL
KSESSSMSHSTPAKQTVLNNPDILQQTTKTSDIKADPTNAIFSQALANEL
GDFYSDLLDQQSMDTTQEDGMFDSTQISQGTIPNQMSSDQFSSTTQNQQQ
DSTIDVQQTLERRFSNDVDSLSDIVDIGTAIAGGSFSSTVSNDKTGFKDY
GNPLKRLMEEEEDIKGVFQASSVNLQMFNKTETNDTSSSGSHVTPMDINT
DFGEIKSPTEDEPKVDFAITMSTNSYSGAYSDVKLSDEELEEILNG
Run BLAST on NCBI

transcript from alignment at sc0000001:2445250..2452430-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000255 ID=TCONS_00000255|Name=TCONS_00000255|organism=Clytia hemisphaerica|type=transcript|length=7181bp|location=Sequence derived from alignment at sc0000001:2445250..2452430- (Clytia hemisphaerica)
CAGAAAATAGAAAACTGATGTTTATATAAAATGGTTGTGATGGCGGTGAA
CAATCGGTATTGTAGTGACTGTTTAGAATCAGGGGAATTTCTACCCCTGA
GACTTGTCATGATGAATTTGGATAGCGGTCTTTGGATGTGTCCCAAAGAT
GATGTAAGATTATATTAATTTTTCTCAATTCGGTATTGTAGTGACTGTTT
AGAATCAGGGGAATTTTTACCCCTGAGACTTGTTATGATGAATTTGGATA
GCAGTCTTTGGATGTGTCAGAAAGAGAATGTAAGATTATCTTAATTTTTC
TCGATTCCTTAATTTAGGTGTTATGTCTATACCCTTTTCAGTTTGCATGA
TGCACCAATAAAATAATTGATATAATCCTAGTATGTTGGTATACCTGCCA
TTATTTTTGAGAGTGTGAATAATTTGTGAATTTTTTTTTTCATTTCAGTG
TACATTTCCCTTATCTTCTCCATCCATGCAGTTATACATGGAAGAAGATT
TGACCACTGAACGTGTTTTGCTGTTGACAGGAAACAAAAGTAAACAATTA
GAGGTTAGTAGAATTTGATTGAAACAAAAGTCATTCAAAAACCAAAAAAA
ACAAAGATAAAAGTAAAAAATTTGTAGTGTCATTATGTCGTATCAGACAT
CACAACAATTCAAACACAGCTAAAATAGAACAAAAACGGAACAAAAACAA
AGACTCAAAAAATCTGCCTTTCATTTAAGATTCTTTAAGAAATTAGTTTT
AGTTTTTTGAGCGATGACTCTTTTGATCGTTTTGGTGTCCCAGACCTTAC
ATTATCTTTTTTTATTTTCCAGAGACCACCAACTCCAGACTCACTAGTAG
CAAGTATTTCATCAAACAAACAAAGTGACATGTTACAACAAACACAATAT
GCAGTAAGTACTACTTCATCAAGTGGAAGTCGAAAACGTAAACATTCAGA
TGGTGGCTCATCAAGCAGATCAACCAAAACAAATAGTTTTCGCAGTGTCA
GCAATTCAAACATTACAGATCCAATATCGTCAGATTCTTCGAGCTTGATG
GCTAACAAAAAGTATCCTTCAGTACCTCTATGGGAAAATGAAGAACTGCT
GTGCTGGCTGGATTCAATGCTTGCACTCATAGTCTTGAACCAAACTTTAC
AGAATTATCCTGAAGAGTCCAAAGGTACCCTAAATAAATTACTCAGCGAA
TACAAACATAATACTGATATTTACAATGTGACAAAAGACTATGAAACAAT
AAGAGCAAGCATGCACACTTTACGGAAATCGACACTCAACTTCATTCAAC
CAAAGATGTTATCCAGCTTCACCGAGGAGGATTCTCCTCTCTTGTCTCTA
CAGCTTTTAATGAAAACCAATGCTGAGCTTTATGAAGATTGCGAAGTGGA
ATACTCGAGTAAATTCACTTGTAACCAATGTCAATTCGAAAAAACTGATG
GGTAAGAAATCATCCCTACGTCTTCTTATTTTTGCTAAAATCTTTTATTT
GAGCACTGGTCGATTGTATAGGTTTAATCTGGGTATTGTGGTTTAAACAT
AATTCGATGAATATTCAGTTTTGATGGTTATTATTTCTTTTTGATTTTTT
ACTAGGTTCAAGAAAACCATACTGACTCTCCCAGAAGGATATCCAGATTT
GAATTTCGTAGAGAATTTATACTACAAAAGGAATTGTTACAAATGCAATG
CACCAGAGCAAAAGAACGTTTTCTATATTGAGAAGTAAGTACTTACTTTT
CATCAAAGTTATTCACAAATCAAACCTCTAATAATAGCTAACGCGTATAC
TCATGTGACAGACCAGGGCAGACAGTGAAATGTACAGGGTTCGAATTAAC
GTATCGCGTTTCGCAATTCGTGATGCGTTTTTGTACGAAGCAAAAATTTA
AAAACTCACCAAAATCGCAATACAACCTATATAAAAATTTTTACAGCTCA
CTAAGTCAGTTTTATTAAATGAGCGTCCAAGCAAATAGAACTGTTATTTG
GCTTATAAATTAGTTTGGAGAGTGGAAAATGCATTGTATATTTATAAAAA
CGCATCGTGAACTATCTAAAATATTTCGCCCCTGCAGCGCACAGATTTAA
CTTACTTTGTTCACTAAAAGGTGCCATTCACTTTTAAATCGTCAAATTCA
ATCCCTGAATGTATATTTAGGACAAAATTACACCTTTCAATTTACCAGGA
AAATCGAGCGTCCAAGATAACAAATTTTTTTTTTACATAATATTTGGTCA
CTTCTCCATAAAATTATTCTCTTGCCAAAAATATTGTAATGTCAGTTGTT
AACTTTTGGTTACTTACTCTGACTTTTTTCCCTGATTTGATGCTTTATCA
TGACGTGCTAATAATCTCTAATCAAACCTCATTTAACCTTCTCTAAGGAA
GGACATGGATAATGCAAAGTAATTCATTCATGTAATTCCTTTTCAAATTT
TAGATATCCAGCTGCGTTGTTTGTGTACTGCAGTACAGGGGTAGGTTGTC
GAAAATACTGGAATTGGTTCAACTTCACATCGCCGGCTGGAGACAATTAT
ATTGTGACGCAAATTGTCCAATACTCTAGAAAGAAGCACCACTTCATTTT
GTGGAGTTACTCTTACAAAGGTAGGTGTTTAAACTGTGTTTTAATTCAAT
ATTCCCAGCATTCAAGATTACTGACAGTAATATTCAAGGCAAAATTGAGT
AAAATTGCTTTGGTGCTTGGTGCATCTTCACCAATGCTCTTTAATATTCT
GTCCGAAACCTTGAACTTGCTTGTTTTGTCCTGGTACTACCATTGCTTTT
GAAAAAAACTTTCTTGTAGAAGTCAAGCTAAGCATAAGTGTGCAAAACCT
GACTTCTTGAGAAAGGGGACTTCCAGTCTTTTAAAAATAGGATGCAAGCT
GCTATTAAACCAGTTAGCTGTTTTTTTGCATCCTATGAAAACACAAAGAC
AACATTCTACTGTCAAAACTAGAACAGTACTTTTTAAATGTGCTGATTCG
AAGAAAACCCAGAGCTGAAAAAATTGTTTTCTTCTTGAAACAAATCTTCA
CAGAAAAAAGTACTGTAAATATTTTTGAGAATAATTAACCTTCGGTTCCG
AAATTTTCTGAGACTTTGTTTTCTGTATATATAGACTAGAGAAAATTTTC
AAATTTCAAAAAATAGTTATCCCAACAGATTCAAAAACTTTAAAATAAAA
AAGATTAGTATTGTGAAATCGATAACTTTAGTAAAATGTTGTAAAGGCGC
GCGATATTGGGAAAAGTTTTCACCTTCTAAACGATTTGTTTATCGTTTCA
AAAAACGGTTAGTATACTTAATTTTTACAAAATCGATTTTGCTTCGATCT
TTTATCGAATATTTCTCGATTTTTCCTCGATTTTTCATTCGATACTTTTT
ATTGAAATATAGTCAAGCCTTGAATATTTGGGATTTTGTTTTCACTTCGT
TCTCTCAAGATGAACAGGTTAGCCATTCCATTCCATTATTGGCGAAGTTG
AAATACAACATTCAAATTTTCTATATTTGGCTATATTTAGCTGTAAAGTT
CAACTTGTACACTCTTTTAATCCTGACTCTTCCCTTTATCTTATAGGTTG
ATGTTATAAACAAAGTTAACATAAAATATCTAGAAAGTTTTATGATAAAT
ACTTTCTCCCCTTTTAAGACCCCATTACTTAACATGGGTTCTTAAAAGTG
AAAGTGTTTTCAGGCTAAAGTCGTAAGTATAAAGGCCATGAATCTTTCCG
GCGTGATATTTTTCTAGCTTTTCAGCTTTTAGACGATGATTCTTTTGCAG
TATAACTTTTCATCGAATCTCCTTCATTTCGCCGTTTTTTGTTTCATTCT
TCAATCAATGTTTCTACTTTATGCGTTCTCTCTTCTTACATCGCGAAAAG
TCCTTTTCCAACTACCCATATCCTTTTCAAAACTACTATATATTTGATCG
CTGAGTGATTTCACTGAAGATTGCCATCCTAGATGGCATCAAACTTTGAG
TATGAAATTAACTTATAAATCGTTTTTTTTTACTCAAACTAGTATATTTG
AGCACTGTGTTATTTAGACAGTACCAAGTAAGTGAGTAAGTAAGTTGTCT
GTGTGTTTGATAAAGGGTACAATATGAAAGGGGTAAGGGTTATTAGGGGA
GAATTTTTGTGTAGGGGGGTTCAGCATGGGGCGCTTGTTATGCATAACTG
AGGGGTTTCTTACCAGTGCAGCCCTAGGGGAGAATAATAGGACTGCTCTA
CTATTATTGTGTTACTTTAATTATCTGGATTTTCACGTTCGATAGAATTC
ATCTGTTGTTTTGGTTTCCCTTCTTTTCTACTTTCTCATTTATACTGCCA
GGGAATAATATTTGCTCTTATTGTTGTTCTTTAGATAAATTATGGATAGA
AGCTGATGATTTAAAACACCCAGTGGTCCAGTATCAACATGAACGACCCA
AATGTCGGTCTCATGAGGTCCACTTCATGGTCCTGGAGAAAGTTTCAACA
CTTGAGGAAGCGATAAAGAAAAATGAACAGAAAAATCTTAGCTCCGAGCA
AACTGGATCCGAAAGCGCACCCGTGACCCCTGAATCCCTGGAATCACCGC
TTTGCTCTGGAAATAGTAGTGTTATTGTACAATACTCTGGGCAATCGAGT
CGCAAAACCTCGCTTTGTAGCAGTGATGGTATTTTACCGAACGGAAGATT
ATCGAATGATAGCGACCGCCCAATTGAAGGGCGTAAGGACAGTGGCGAAC
TTCCAAATGATCAACTTCGAAAGAAATCCTTGTTGCACGTACCTTATTAC
AAGCCGTTTACAGCACGTTCAAAGCAANCAGTACCAAGTAAGTGAGTAAG
TAAGTTGTCTGTGTGTTTGATAAAGGGTACAATATGAAAGGGGTAAGGGT
TATTAGGGGAGAATTTTTGTGTAGGGGGGTTCAGCATGGGGCGCTTGTTA
TGCATAACTGAGGGGTTTCTTTACCAGTGCAGCCCTAGGAGAGAATAATA
GGACTGCTCTACTATTATTGTGTTACTTTAATTATCTGGATTTTCACGTT
CGATAGAATTCATCTGTTGTTTTGGTTTCCCTTCTTTTCTACTTTCTCAT
TTATACTGCCAGGGAATAATATTTGCTCTTATTGTTGTTCTTTAGATAAA
TTATGGATAGAAGCTGATGATTTAAAACACCCAGTGGTCCAGTATCAACA
TGAACGACCCACATGTCGGTCTCATGAGGTCCACTTCATGGTCCTGGAGA
AAGTTTCAACACTTGAGGAAGCGATAAAGAAAAATGAACAGAAAAATCTT
AGCTCCGAGCAAACTGGATCCGAAAGCGCACCCGTGACCCCTGAATCCCT
GGAATCACCGCTTTGCTCTGGTAATAGTAGTGTTATTGTACAATACTCTG
GGCAATCGAGTCGCAAAACCTCGCTTTGTAGCAGTGATGGTATTTTACCG
AACGGAAGATTATTGAATGATAGCGACCGCCCAAGCGAAGGGCGTAAGGA
TAATCGCGATCTTCCAGATGATCAACTTCGAAAGAAATCCTTGTTGCACG
TACCTTATTACAAGCCGTTTACAGCACGTTCAAAGCGTACAGCTAGAGAA
AGTCCTACAAATTACAACCAGAATGCAACATCTTCTCATCTTAAATCTGA
AAGCAGTAGCATGTCGCACAGTACACCAGCAAAACAGACTGTTCTAAACA
ACCCTGACATTTTACAACAAACCACTAAAACATCAGACATAAAGGCGGAT
CCTACGAACGCGATTTTCAGTCAAGCTTTAGCTAACGAACTCGGTGATTT
TTATTCGGATCTTTTAGACCAACAATCTATGGACACTACCCAAGAAGATG
GCATGTTTGATTCGACACAAATTTCCCAGGGAACTATTCCTAACCAAATG
TCGTCTGATCAATTCAGCTCTACCACCCAAAACCAACAGCAAGACTCTAC
AATCGACGTTCAACAAACTCTAGAACGTCGATTTAGTAACGATGTTGATT
CGTTGAGTGATATAGTTGATATAGGTACTGCAATCGCCGGAGGTTCTTTT
TCAAGTACCGTATCTAACGATAAAACTGGATTTAAAGATTATGGAAACCC
TTTGAAAAGACTTATGGAGGAAGAGGAAGATATCAAAGGAGTTTTCCAAG
CTTCTTCTGTCAATTTACAGATGTTTAATAAGACTGAAACGAATGATACC
TCTTCAAGTGGGTCGCATGTAACACCAATGGATATAAATACTGATTTTGG
TGAAATTAAGTCACCAACCGAGGACGAACCCAAGGTCGATTTTGCAATCA
CCATGTCGACGAACAGTTATTCTGGAGCGTATTCGGACGTCAAACTGTCT
GACGAGGAATTAGAAGAAATTTTAAACGGGTGATGAGTTAAGAATTGAAT
CGAATATCTACCGGTAACACAGTTATGTGTGTATGTCACGTGTATAATAA
ATCGCATAAACTGGTCGCTCTTTGTTTGAACGGGAACTGGAAGAGATTAA
TTCTGATTTCGACTCAGAAATTTACTGTAGAGAGTCTCAAAACAGAATGA
GAATCAATATGACATAAATAGTAGAGGTAAAGGTATAGCGTTCTACAGTA
TGTGGCCCCCAAAACGTCAATCAAATTTGAAATGTCTCTCAAATCTAGAG
GAAAAAAGGTTTTACAAAAATTTTTGCTGCATGAAAAGCTTTAACATCTC
TACTTTATTTCCTGGAAGTTCTTTTTCAAAATTTTCAATTTCAACAATAT
TTTTAAATCGCTTAAAGATAGCTTTTTTCTAATGGCCCCAAAAACGGAGG
TTTGCAATTTTAGCGACTTCTCGAGATATCTTTAAGATATGAATACAAAA
TTTTGACCATAGTTTTGAAATGTGATTTAGAGGGTTTTGGGCATAAATTT
GTTTGATAAAATTTTTACAGTATACCCCTGGTTGTCAAAACGGTGGTTTG
GGGCCCCCAAAACGTAGGTGTAGTTAAAATTAAATTATTAAGCCTAGTGG
TAATAGGGGGAACTATGAACATATTTGTGTTTTCCCTTAAATTTACGACC
CGATGGATGTAAAATTTATGATTTTTATAAAGTATTTCAAGATTTTCGAT
GATGCAAAGTCCAAACTGAAAATTTAGAAATTTTCAAAATGACAATTTTG
ATTTACAACGTCTTAATCAAGTTTCTGAAAA

Coding sequence (CDS) from alignment at sc0000001:2445250..2452430-

>TCONS_00000255 ID=TCONS_00000255|Name=TCONS_00000255|organism=Clytia hemisphaerica|type=CDS|length=2391bp|location=Sequence derived from alignment at sc0000001:2445250..2452430- (Clytia hemisphaerica)
ATGGTTGTGATGGCGGTGAACAATCGGTATTGTAGTGACTGTTTAGAATC
AGGGGAATTTCTACCCCTGAGACTTGTCATGATGAATTTGGATAGCGGTC
TTTGGATGTGTCCCAAAGATGATTGTACATTTCCCTTATCTTCTCCATCC
ATGCAGTTATACATGGAAGAAGATTTGACCACTGAACGTGTTTTGCTGTT
GACAGGAAACAAAAGTAAACAATTAGAGAGACCACCAACTCCAGACTCAC
TAGTAGCAAGTATTTCATCAAACAAACAAAGTGACATGTTACAACAAACA
CAATATGCAGTAAGTACTACTTCATCAAGTGGAAGTCGAAAACGTAAACA
TTCAGATGGTGGCTCATCAAGCAGATCAACCAAAACAAATAGTTTTCGCA
GTGTCAGCAATTCAAACATTACAGATCCAATATCGTCAGATTCTTCGAGC
TTGATGGCTAACAAAAAGTATCCTTCAGTACCTCTATGGGAAAATGAAGA
ACTGCTGTGCTGGCTGGATTCAATGCTTGCACTCATAGTCTTGAACCAAA
CTTTACAGAATTATCCTGAAGAGTCCAAAGGTACCCTAAATAAATTACTC
AGCGAATACAAACATAATACTGATATTTACAATGTGACAAAAGACTATGA
AACAATAAGAGCAAGCATGCACACTTTACGGAAATCGACACTCAACTTCA
TTCAACCAAAGATGTTATCCAGCTTCACCGAGGAGGATTCTCCTCTCTTG
TCTCTACAGCTTTTAATGAAAACCAATGCTGAGCTTTATGAAGATTGCGA
AGTGGAATACTCGAGTAAATTCACTTGTAACCAATGTCAATTCGAAAAAA
CTGATGGGTTCAAGAAAACCATACTGACTCTCCCAGAAGGATATCCAGAT
TTGAATTTCGTAGAGAATTTATACTACAAAAGGAATTGTTACAAATGCAA
TGCACCAGAGCAAAAGAACGTTTTCTATATTGAGAAATATCCAGCTGCGT
TGTTTGTGTACTGCAGTACAGGGGTAGGTTGTCGAAAATACTGGAATTGG
TTCAACTTCACATCGCCGGCTGGAGACAATTATATTGTGACGCAAATTGT
CCAATACTCTAGAAAGAAGCACCACTTCATTTTGTGGAGTTACTCTTACA
AAGATAAATTATGGATAGAAGCTGATGATTTAAAACACCCAGTGGTCCAG
TATCAACATGAACGACCCACATGTCGGTCTCATGAGGTCCACTTCATGGT
CCTGGAGAAAGTTTCAACACTTGAGGAAGCGATAAAGAAAAATGAACAGA
AAAATCTTAGCTCCGAGCAAACTGGATCCGAAAGCGCACCCGTGACCCCT
GAATCCCTGGAATCACCGCTTTGCTCTGGTAATAGTAGTGTTATTGTACA
ATACTCTGGGCAATCGAGTCGCAAAACCTCGCTTTGTAGCAGTGATGGTA
TTTTACCGAACGGAAGATTATTGAATGATAGCGACCGCCCAAGCGAAGGG
CGTAAGGATAATCGCGATCTTCCAGATGATCAACTTCGAAAGAAATCCTT
GTTGCACGTACCTTATTACAAGCCGTTTACAGCACGTTCAAAGCGTACAG
CTAGAGAAAGTCCTACAAATTACAACCAGAATGCAACATCTTCTCATCTT
AAATCTGAAAGCAGTAGCATGTCGCACAGTACACCAGCAAAACAGACTGT
TCTAAACAACCCTGACATTTTACAACAAACCACTAAAACATCAGACATAA
AGGCGGATCCTACGAACGCGATTTTCAGTCAAGCTTTAGCTAACGAACTC
GGTGATTTTTATTCGGATCTTTTAGACCAACAATCTATGGACACTACCCA
AGAAGATGGCATGTTTGATTCGACACAAATTTCCCAGGGAACTATTCCTA
ACCAAATGTCGTCTGATCAATTCAGCTCTACCACCCAAAACCAACAGCAA
GACTCTACAATCGACGTTCAACAAACTCTAGAACGTCGATTTAGTAACGA
TGTTGATTCGTTGAGTGATATAGTTGATATAGGTACTGCAATCGCCGGAG
GTTCTTTTTCAAGTACCGTATCTAACGATAAAACTGGATTTAAAGATTAT
GGAAACCCTTTGAAAAGACTTATGGAGGAAGAGGAAGATATCAAAGGAGT
TTTCCAAGCTTCTTCTGTCAATTTACAGATGTTTAATAAGACTGAAACGA
ATGATACCTCTTCAAGTGGGTCGCATGTAACACCAATGGATATAAATACT
GATTTTGGTGAAATTAAGTCACCAACCGAGGACGAACCCAAGGTCGATTT
TGCAATCACCATGTCGACGAACAGTTATTCTGGAGCGTATTCGGACGTCA
AACTGTCTGACGAGGAATTAGAAGAAATTTTAAACGGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000139XLOC_000139Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000255-proteinTCONS_00000255-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000255-exon-sc0000001-1575043694:2452278..2452430TCONS_00000255-exon-sc0000001-1575043694:2452278..2452430Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1575043694:2451878..2451982TCONS_00000255-exon-sc0000001-1575043694:2451878..2451982Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1575043694:2450980..2451608TCONS_00000255-exon-sc0000001-1575043694:2450980..2451608Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1575043694:2450697..2450825TCONS_00000255-exon-sc0000001-1575043694:2450697..2450825Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1575043694:2449811..2449977TCONS_00000255-exon-sc0000001-1575043694:2449811..2449977Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1575043694:2445250..2447285TCONS_00000255-exon-sc0000001-1575043694:2445250..2447285Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1510915933:2452278..2452430TCONS_00000255-exon-sc0000001-1510915933:2452278..2452430Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1510915933:2451878..2451982TCONS_00000255-exon-sc0000001-1510915933:2451878..2451982Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1510915933:2450980..2451608TCONS_00000255-exon-sc0000001-1510915933:2450980..2451608Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1510915933:2450697..2450825TCONS_00000255-exon-sc0000001-1510915933:2450697..2450825Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1510915933:2449811..2449977TCONS_00000255-exon-sc0000001-1510915933:2449811..2449977Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1510915933:2445250..2447285TCONS_00000255-exon-sc0000001-1510915933:2445250..2447285Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1491911889:2452278..2452430TCONS_00000255-exon-sc0000001-1491911889:2452278..2452430Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1491911889:2451878..2451982TCONS_00000255-exon-sc0000001-1491911889:2451878..2451982Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1491911889:2450980..2451608TCONS_00000255-exon-sc0000001-1491911889:2450980..2451608Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1491911889:2450697..2450825TCONS_00000255-exon-sc0000001-1491911889:2450697..2450825Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1491911889:2449811..2449977TCONS_00000255-exon-sc0000001-1491911889:2449811..2449977Clytia hemisphaericaexon
TCONS_00000255-exon-sc0000001-1491911889:2445250..2447285TCONS_00000255-exon-sc0000001-1491911889:2445250..2447285Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2445250..2452430 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.70362	2.86004	1.5936	0.866515	8.80411	6.91374	8.56783	6.54418	3.36798	3.5692	2.86021	4.18578	5.44466	1.91242	2.13983	1.6812	0	0.0102201	0.647803	5.2768	5.78411	5.67774	2.61112	3.81106	7.59228	9.71447	7.32733	5.14344	3.9486	4.20823
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028890Peptidase_C98
Vocabulary: Molecular Function
TermDefinition
GO:0070140SUMO-specific isopeptidase activity
GO:0032183SUMO binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0032183 SUMO binding
molecular_function GO:0070140 SUMO-specific isopeptidase activity
Blast
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BLAST of TCONS_00000255 vs. Swiss-Prot (Human)
Match: USPL1 (SUMO-specific isopeptidase USPL1 OS=Homo sapiens GN=USPL1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 8.972e-19
Identity = 74/306 (24.18%), Postives = 142/306 (46.41%), Query Frame = 1 
Query:  517 WENEELLCWLDSMLALIVLNQTLQN----YPEESKGTLNKLLSEYKH-NTDIYN--------------VTKDYETIRASMHTLRKSTLNFIQPKMLSSFTEEDSPLLSLQLLMKTNAELYEDCEVEYSSKFTCNQCQFEKTDGFKKTILTLPEGYPDLNFVENLYYKRNCYKCNAPEQKNVFYIEKYPAALFVYCSTGVGCRKYWNW-FNFTSPAGDNYIVTQIVQYSRKKHHFILWSYSYKDKLWIEADDLKHPVVQYQHERPTCRSHEVHFMVLEK----VSTLEEAI----KKNEQKNLSSEQ 1350
            W+N   LCWLD +L+ +V ++ L+N       + +    +LL++Y   NT +Y                ++ +  I   ++ +R      +QP++  +  + +SP+ +  LL+K    + +     +S  F C+QC  +  +   K+++T     P+ + +   ++   C  CN+  Q     +EK      ++   G+      ++ F+F    G  Y +T ++QY R  +HFI W     D  W+E DDLK P  + +H++    + E+H ++ E+    V+  E A     K N+Q  LS+E+
Sbjct:  229 WKNAYALCWLDCILSALVHSEELKNTVTGLCSKEESIFWRLLTKYNQANTLLYTSQLSGVKDGDCKKLTSEIFAEIETCLNEVRDEIFISLQPQLRCTLGDMESPVFAFPLLLKLETHIEKLFLYSFSWDFECSQCGHQYQNRHMKSLVTFTNVIPEWHPLNAAHFGP-CNNCNSKSQIRKMVLEKVSPIFMLHFVEGLPQNDLQHYAFHF---EGCLYQITSVIQY-RANNHFITWILD-ADGSWLECDDLKGPCSE-RHKKFEVPASEIHIVIWERKISQVTDKEAACLPLKKTNDQHALSNEK 527
The following BLAST results are available for this feature:
BLAST of TCONS_00000255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
USPL18.972e-1924.18SUMO-specific isopeptidase USPL1 OS=Homo sapiens G... [more]
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