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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001097 ID=TCONS_00001097|Name=TCONS_00001097|organism=Clytia hemisphaerica|type=transcript|length=4624bpRun BLAST on NCBI protein sequence of TCONS_00001097-protein >TCONS_00001097-protein ID=TCONS_00001097-protein|Name=TCONS_00001097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1233bp MVRKKFNLPGQSSQSADNGEVDNTWTVIPSAILKSEDSKTSTQKHKNNKIRun BLAST on NCBI transcript from alignment at sc0000007:132939..151170- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001097 ID=TCONS_00001097|Name=TCONS_00001097|organism=Clytia hemisphaerica|type=transcript|length=18232bp|location=Sequence derived from alignment at sc0000007:132939..151170- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:132939..151170- >TCONS_00001097 ID=TCONS_00001097|Name=TCONS_00001097|organism=Clytia hemisphaerica|type=CDS|length=3702bp|location=Sequence derived from alignment at sc0000007:132939..151170- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001097 vs. Swiss-Prot (Human)
Match: AT10A (Probable phospholipid-transporting ATPase VA OS=Homo sapiens GN=ATP10A PE=2 SV=2) HSP 1 Score: 558.91 bits (1439), Expect = 3.528e-171 Identity = 333/820 (40.61%), Postives = 455/820 (55.49%), Query Frame = 3
Query: 1560 EFFTVLTICNTVVVSS--QPEV-------ISDTLETSADFTFAEDERNGTLNGTTTHKKLSLPTNSLNGSANIKHLPRS--MTMSGPEVTIDPASPQTENGLVRLNDSGVDFLS----TERRVRVFSTKXXXXXXXXXXXXXXWLNYGLVPTYEYESPDEGALVKASSLYNYKLANRTPEQIFFTTPDGEIKVYDILQVLTFDSARKRMSIIVRDD-EGQIKMYSKGADTTIMSRL---------ADDQEDLVKNTDEQLEGFAKDGLRTLCIAKRDLSEEEYEGWLEQHKQAEVALTDRDEKLAQSAETIETNFTLLGATGIDDRLQEGVPETIASLRHAGIKLWILTGDKQETAVNIGFSCKLLDPAMEIITLNSSTKEQCKELLQQ--------------------IKMRLDSQWPSYTVLPTHRYSTDQNSRPPLALIIDGITLSFTLEKPLDSTFIEIAKRCESVICCRATPLQKASVVKLVRDNLKVMTLAIGDGANDVSMLQTAEIGVGIAGQEGVQAVMASDFVLGRFYFLKRLLLLHGFWCYERISRMILYFFYKNAMFVALLFWYQIYNGFSGSNTIDDVSLILYNLAFTSLPPIFNGVFDQCLPEKAVFSRPILYQLGQYGKAYTRPWFWVSIIDAFYQSLILFFIPYFTYLSLPNAGMLVLGILFHQLAVVTANLHCAIETPNWTIIHFVIIFGSVVISFLYFFIYSA-----FTEVSLYWGIFHLMGHAEFWLLLIFCPFLAVLPRLVLRVFQTSFYPSVLQRVRSHLTASGELADNKMKSF--GDEPCQNNDGDNGTNQTSSAT*K 3863
+FF LTICNTVVV+S QP + ++T DF + +G ++ L+ +S ++ P S M + E P S NG D+ L+ +ER +R YE ESPDE ALV A+ YN L R +Q+ P +++L L FDS RKRMS+++R +I +Y+KGAD+ +M L Q+ + T L +A +GLRTLCIAKR LS+EEY WL+ H +AE +L + +E L QSA +ETN LLGATGI+DRLQ+GVPETI+ LR AG+++W+LTGDKQETAVNI ++CKLLD E+ITLN++++E C LL Q + MR S P T ST RP +L+IDG +L++ LEK L+ F+ +AK+C SV+CCR+TPLQK+ VVKLVR LK MTLAIGDGANDVSM+Q A++GVGI+GQEG+QAVMASDF + +F +L+RLL+LHG WCY R++ M+LYFFYKN MFV LLFW+Q + GFS S ID LI +NL F+SLPP+ GV D+ +P + + P LY+ GQ + Y FW ++ DA +QSL+ F IPY Y N + G +A++T LH IET WT ++++ SV++ F IY+A + + YW + L+G F+L + P A+LPRL R Q +P+ LQ R S ++F G P D+GT +S T K
Sbjct: 570 DFFIALTICNTVVVTSPDQPRTKVRVRFELKSPVKTIEDF-LRRFTPSCLTSGCSSIGSLAANKSSHKLGSSFPSTPSSDGMLLRLEERLGQPTSAIASNGYSSQADNWASELAQEQESERELR----------------------------YEAESPDEAALVYAARAYNCVLVERLHDQVSVELPHLGRLTFELLHTLGFDSVRKRMSVVIRHPLTDEINVYTKGADSVVMDLLQPCSSVDARGRHQKKIRSKTQNYLNVYAAEGLRTLCIAKRVLSKEEYACWLQSHLEAESSLENSEELLFQSAIRLETNLHLLGATGIEDRLQDGVPETISKLRQAGLQIWVLTGDKQETAVNIAYACKLLDHDEEVITLNATSQEACAALLDQCLCYVQSRGLQRAPEKTKGKVSMRFSSLCPPST-------STASGRRP--SLVIDGRSLAYALEKNLEDKFLFLAKQCRSVLCCRSTPLQKSMVVKLVRSKLKAMTLAIGDGANDVSMIQVADVGVGISGQEGMQAVMASDFAVPKFRYLERLLILHGHWCYSRLANMVLYFFYKNTMFVGLLFWFQFFCGFSASTMIDQWYLIFFNLLFSSLPPLVTGVLDRDVPANVLLTNPQLYKSGQNMEEYRPRTFWFNMADAAFQSLVCFSIPYLAYYD-SNVDLFTWGTPIVTIALLTFLLHLGIETKTWTWLNWITCGFSVLLFFTVALIYNASCATCYPPSNPYWTMQALLGDPVFYLTCLMTPVAALLPRLFFRSLQGRVFPTQLQLARQLTRKSPRRCSAPKETFAQGRLP-----KDSGTEHSSGRTVK 1345 HSP 2 Score: 435.647 bits (1119), Expect = 3.232e-127 Identity = 214/402 (53.23%), Postives = 284/402 (70.65%), Query Frame = 3
Query: 273 KTSTQKHKNNKIKTTKYTLLSFLPKNLFEQFHRFANVYFLFIVILNWIPAVNAFGKEIAMLPLIFVLAVTAIKDLIEDRQRYSSDKIVNNRIAAVYDSDTEKFPDKKWSNIEVGDIVKLYNNDILPADMLLLNSSDENGLCHVSTANLDGETNLKQKQIPKGFLEDGHIFKVKEDVTFQ--VKCETPNNNLHNFYGYIVQSNGGEIAIDRNNLLLRGCVIKNTESLYGLVIYAGHDTKAMLNNSGTRYKRSRLEKDINKDVLGCVAILFVLCLTGAIGTGYWTSENGLYEDMFMGYVAD----SPAFEGFLRFLTFVIILQVIIPISLYVSVEIVKLGQVYFINHDIGLYYPETAQYPVCRATNINEDLGQIQYIFSDKTGTLTENKMVFKKYSIAGHSFVH 1460
+ Q +N++KTTKYTLLSFLPKNLFEQFHR ANVYF+FI +LN++PAVNAF +A+ P++F+LA+TA +DL ED R+ SD +N+ V+ + +K+ ++ W I VGD V+L N+I PAD+LLL+SSD +GLCH+ TANLDGETNLK++Q+ +GF E F +TF ++CE PNN+L F G I+ NG + + + NLLLRGC ++NT+++ G+VIYAGH+TKA+LNNSG RYKRS+LE+ +N DVL CV +L + L A+G G W + +F +D SP FLT +I+LQV+IPISLYVS+EIVK QVYFIN D+ LY ET CRA NI EDLGQIQYIFSDKTGTLTENKMVF++ +++G + H
Sbjct: 53 RGCAQHLADNRLKTTKYTLLSFLPKNLFEQFHRPANVYFVFIALLNFVPAVNAFQPGLALAPVLFILAITAFRDLWEDYSRHRSDHKINHLGCLVFSREEKKYVNRFWKEIHVGDFVRLRCNEIFPADILLLSSSDPDGLCHIETANLDGETNLKRRQVVRGFSELVSEFN---PLTFTSVIECEKPNNDLSRFRGCIIHDNGKKAGLYKENLLLRGCTLRNTDAVVGIVIYAGHETKALLNNSGPRYKRSKLERQMNCDVLWCVLLLVCMSLFSAVGHGLWIWRYQEKKSLFYVPKSDGSSLSPVTAAVYSFLTMIIVLQVLIPISLYVSIEIVKACQVYFINQDMQLYDEETDSQLQCRALNITEDLGQIQYIFSDKTGTLTENKMVFRRCTVSGVEYSH 451 The following BLAST results are available for this feature:
BLAST of TCONS_00001097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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