TCONS_00002278 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002278
Unique NameTCONS_00002278
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002278 ID=TCONS_00002278|Name=TCONS_00002278|organism=Clytia hemisphaerica|type=transcript|length=2480bp
gctcaattcaaaattgagcgGGACGCTTCCTGACGCATGTAaacacaaat
ttttttatctgagATTTTTAGATTTATCATCTTGAATCAGATGAATTGTG
AATTTCTTTATTAAAGTCTTGAGAGGTTTAGCATGGTTTTACGTCAATAT
TCATTCTATTGGAATTTTGAGACATTGAAGAACACATTCAATATGTAAAG
ATATAAATTTTATTGCAGGCATAAAAACATGTGAGATTTCGTTACACACT
TAatcatcaaataaaaaaacaagcaaGAAGATGAAAGTCAGAAGTGATAG
TCCAAGGTATCAACTTGAAGCTAAAGTTCAAGAAGCTCTTCAAGCAAAAC
GAAAACGGCAGGACATCAATAGCATCTTTGTAGCCCTCATATTTTGTATA
TCAACACTGACAGTTTTTGGTGCTGTTGTCCAACAAAACCTCCCTTTCAT
CACAAGCCAAACAACTTTCATCAATGGTAACTATGTACACCATCGCTTCT
CAGAGATTCTGAAATTGAAAGAACTGATTGCGAATCGATCTACCAATTTT
TGGTTTGCTGGTAATTCTCTTGGATATCCGTTTATGACGACACAACCACT
TCCTTTCTTCTCCACTGCTTTCTTTATGACGGTAGcagaaagATTTCTTG
GATTATCCGCGCTATGTTTCATGAGGAATTACATGCTGATTTTAGTCATA
GCTCTCCCTATATCCTGGTACATTGGTTGCCGTAAAATGAAAGCATCGCG
TGTTCAGAGCTTGTTCACTGGCCTCTCTGTATTCTTGATAACGAGTCAGC
TGCAGAACGGATTTGAGATTCATGAATACTTGATTGAAggaaatgtttgt
ttgctttaCGCCCATCTGTTGTTCCCACATACAGTTGCGCAGATTTATCA
TCACGCTTTCCATCCTGACACTACTGAATCTCCATTCTTCTTACTATGCT
TAACATTCCTTTGTTCAACATTCACTGGCATCTACTGTTCATTACTGAGT
CTGACATCGAGTCTGGCCGTTAGTTGCAGTGGTATCAACCAAAACATATC
CACTAAAAGTGTAATCAAATCATGGCTTGGAATGAACTGCAAAGTTTTAT
GCTACATATCATGGATGATTATCCCTACTCTCATTTCTTTACCATATTTC
GGTGCACAAGTCCGAGAATCAACGGGTGGATTCAACATTCCCAGCTTGGT
CAATATGCTCATCAATGGTAACCTGTTTGATTATAACCAAGGTCATTATT
ACATGACTCTGCTGGTGACCTCAGGAACAATCTTATCCCTAATCCGTTGT
TATTACTACTACAAATCGAATCTGGCAATCAAGCTTTTGAACCGTCAAGC
AACTTTTATATGCTGGATCTTGGGAATGTCATTTTTCTCCATCTTACTTT
ATGTGGATCAAAAGGTCTGGACAATGCTAACCAACATGTTGCCGGTGAAC
TTCAGTCTCAATAAAAGTGCATCCATCATTGGCCTTCAAGCTTTTGGATG
TTTCTTATCTGGTATTTTCCTTGAAAAGCTTGTTGAGCTGTTTTGCACGA
GCTCTATTGAATTTGATAACTGGTCCAAAGGGAATTTAGCTTCACCTCCT
GACTTGTACAATTACAAATGGAAGAAAATCACCGCAGTAGTGTTTATTGG
GTTGGTCATGATTAAGAGTGGAGCTGACCGTGTCTGTGAGAAGACAGCGT
TGTTGGAGATGAATGAGACATTCGAACAGGCAATCGAGGAAATGACATCT
AAAAGTAACAACAAAGAGGGTAGAATCTTAACCAATATCAAACTAGGTTC
AGGAAACTCATGGGATTTGTCAAATATTCCAATCCAAACAAAATTACCAG
gGGCGATGTCTTACTCATCTGAGTGGTATGACAGTCTATCAGTGTTCTAT
GTCGATTCCATCAAATTCCACAATGTTAATATCATGGACATGAAAAAGAT
CTTACAGCTATATAACATTCGATATTTGGTTCTATCCACTCATATTCTGA
ATGCAAAGTTCCAGGACTTATCTCATTTCAAGACGCTGGCACAGTCTGAT
GATATCACCTTCCTAGAGGTTGTGTATGATTTCACCAAGAGGCGTCCGTC
ATACTTCGACATGGTTCACCTACCCGGCTTTGTCAATGGGAATCTGAATA
ATATGCGAGAGACAGTACAAAGGACGCTTGAGTTGTATAAAGATAACGCC
TTGTTGTATTTGAATCCAAGACAAGGCAATCGTGTCAAAAATGAAGGCAT
TATCAATGTCCAGGTGATGAGGATCCCAACAAACAATGATGCATCATTGG
TGACGTGGCGAATGAACGGTCAAGGGATGAACTCTGAAGAAATCATCAAA
CAAATGCATTCTTCATACGAAGATCATTATGAAGAAGAGTATGACGTCAT
CCAATCCAAAATCATTGAAGAAAAGAATAATGGACTTGAATATCATGTTA
TTGTTGAGGTCAATCACAATCCATCGGANN
Run BLAST on NCBI

protein sequence of TCONS_00002278-protein

>TCONS_00002278-protein ID=TCONS_00002278-protein|Name=TCONS_00002278-protein|organism=Clytia hemisphaerica|type=polypeptide|length=733bp
MKVRSDSPRYQLEAKVQEALQAKRKRQDINSIFVALIFCISTLTVFGAVV
QQNLPFITSQTTFINGNYVHHRFSEILKLKELIANRSTNFWFAGNSLGYP
FMTTQPLPFFSTAFFMTVAERFLGLSALCFMRNYMLILVIALPISWYIGC
RKMKASRVQSLFTGLSVFLITSQLQNGFEIHEYLIEGNVCLLYAHLLFPH
TVAQIYHHAFHPDTTESPFFLLCLTFLCSTFTGIYCSLLSLTSSLAVSCS
GINQNISTKSVIKSWLGMNCKVLCYISWMIIPTLISLPYFGAQVRESTGG
FNIPSLVNMLINGNLFDYNQGHYYMTLLVTSGTILSLIRCYYYYKSNLAI
KLLNRQATFICWILGMSFFSILLYVDQKVWTMLTNMLPVNFSLNKSASII
GLQAFGCFLSGIFLEKLVELFCTSSIEFDNWSKGNLASPPDLYNYKWKKI
TAVVFIGLVMIKSGADRVCEKTALLEMNETFEQAIEEMTSKSNNKEGRIL
TNIKLGSGNSWDLSNIPIQTKLPGAMSYSSEWYDSLSVFYVDSIKFHNVN
IMDMKKILQLYNIRYLVLSTHILNAKFQDLSHFKTLAQSDDITFLEVVYD
FTKRRPSYFDMVHLPGFVNGNLNNMRETVQRTLELYKDNALLYLNPRQGN
RVKNEGIINVQVMRIPTNNDASLVTWRMNGQGMNSEEIIKQMHSSYEDHY
EEEYDVIQSKIIEEKNNGLEYHVIVEVNHNPSX
Run BLAST on NCBI

transcript from alignment at sc0000019:887879..900122+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002278 ID=TCONS_00002278|Name=TCONS_00002278|organism=Clytia hemisphaerica|type=transcript|length=12244bp|location=Sequence derived from alignment at sc0000019:887879..900122+ (Clytia hemisphaerica)
gctcaattcaaaattgagcgGGACGCTTCCTGACGCATGTAaacacaaat
ttttttatctgagATTTTTAGATTTATCATCTTGAATCAGATGAATTGTG
AATTTCTTTATTAAAGTCTTGAGAGGTTTAGCATGGTTTTACGTCAATAT
TCATTCTATTGGAATTTTGAGACATTGAAGAACACATTCAATATGTAAAG
ATATAAATTTTATTGCAGGCATAAAAACATGTGAGATTTCGTTACACACT
TAatcatcaaataaaaaaacaagcaaGAAGATGAAAGTCAGAAGTGATAG
TCCAAGGTAATTTATTAAGGCTGTTTATTCTGAATGCTTTTAGTTACATa
cgattttgttttcaaatttgttcATCTACAGATCAAATCTTAGGAACTTT
CTCAcaacagttttattttttaaatgtaccGTAAACTGCCCTAACAACTT
GCCGgatgattggtcgaaacatgggactgttgatatctggcttGTATATT
CACTTactgtcagttagtcacactagcatcccgccaaaatgcgtatcaaa
gattaatgctacgaaagcgctatatccatttacttgactctcaagcaaaa
aaatgcgccgcaaaacttctaaagggattcatgaaaaaataacccggcgc
tttttaatgaaattaacattttcaaaaactttgagaaattgcctaaaatt
tgagccatagatgaaaaaatttgagccaagccaaccttgaaaactaattt
gaagatgaacttcccaagaaaaagatctacaggggaggcggaacccacct
agatccgcgcaccaccggataggctgtttcccgggaaattttgccggaca
tCAAACAacgacccatttacatgtgcggaattaaaCTAACTCGGGTAATA
CTAGGGTAATACTCAAGTAATTGACGTGAGGTATACCCGAAAATCCCGAT
GAGCAATTTACTCGAGTATTTCCTCGAGTATTTCGGgtcgaaaaattcca
aaaatagaaACCCGTCTTACCCGGGTAATTAGGGTTCTCGGGTTTACCTG
ATTTACCCGTTTGCTCACATCGGCCTCTTCACAGTTCAAACTCGGGTAAA
TCAGGTTTAAATAGCAGTGGTTTTTGCGAAACATACtcgaaattgttttg
ttaaaaatACCGCAAGAAAAAAGAGGAAGCATCACATTTTGCATTACTTT
ACTTGATATATTTTCAGAATAATCACATAAGAATTCACAAATACAGTTTA
ACAGCGTAAGAGTAATCTAGCTTCGAAATACACGATTTACAAACATAGAC
TGTTAACGatctttttggggaaaaataaTTTGTTGACTGGCTCTTTTATC
AACTTAATGTAACGTCTGTTCCAACTAATTCAGAAAAGGCATTTTCTAGT
TTTTGAACATNAGATGTcataataaaagtaaaaattcgtccaaaagataa
ttttgagtggaTTAATAAGGCAAGTCTTAAAGCAGTGTCAAGAAAGGTTA
TCCTACAAAATCtttgataaaattaatatagtataaaatgaaagtaaatt
gATATAAATTCTAAATTCATAAATAGTAAATAATTTGTCTACTTTAACAC
ATTTCATAGaatgaaaaaattacttttacatGATTGTTCTTTAATTGATT
TTTGATACATACAATGTCCCATTGANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTCACCAT
CTAATATAGACACGGGGAACGTGTTTGAGACTGAAGATTCATATTGCAAA
AGAAATGTGAAAACAACATCGCAAATTTGAGTTGAGTTAACCAAATTTGT
CGCTGTCACGAACTCAATTGATTTTCCTCACcttaaaaattaatgataaa
TAATGATGTCATGGAAATTCAGTAAGGTTTTGAAGCGTTGTCCCTTATTG
TATACATTTAATGTCTGAATTTCCCTGTGGAGGGGTACTGTCACTGGCGT
GTCACTGGTGTTCAAAAATGGATCCTAGACAATTTTTAgctgatttcaaa
aatttagtgaattttaaaatattccaaGTATTTCTTTACTTATAAAAGGG
ACTCTGGTCAGTGACACATCCCCCTCTTGCCTGAGTGCCCTAGGGAGTCc
ttcaacaaaaatttcaaaccctcAGAACTTGAAATGGCTTCCCTAAAAAA
TAGTATACTGGAATATATGATATAGTTGACCTGTTCATCCGCCCAAATAT
CTTCGCATTGAAAAATAACACTTACTTGTTAAATGGGGAAGAATTTTCAT
CAGCTTTCGAATTTTGATTCAGTTGGTACTATGGTTGGAAGAGNNNNNNN
NNNNNNNNNNNGTTGGTACTATGGTTGGAAGAGCCatgtctaaaaaaata
ttagaatttCTCATTACTGAATTGTTACCACAAACTCCATTTAAATCTCA
AGCAATgacttttataagaatttacgAAAGGCTACAAATTCTTGTTCACA
GCCTTCAATGTACTGagctaccttattggtatatattttcgcgtgttaca
aattttcgcgggtacttaatttcgcgggttttttggtcaattttcgcgaa
atttaatactgtttaaatttttcaaaattacaaaatcgcgaaattaaata
cacgcgaaaaatgttttcttagtattttgttagtatttttacatcaaaaa
cgttgtgtttcaagcaaaatcagtctttttcttggtttatattcccactt
tctgaaaatacctagtttagtgaatcgcaaaatttgatacatgcgaaaat
tttccagaagtcggcaatcgcgaaatttaatacacgggACTGCacgggaa
gaaaatttgtaacacgcgaaaatatataccaataaggtatacaGACCaaa
tatttgtgatttttacaGTTCGGCCATCTGTTTAACAGGCATCTTTCAAC
ATCTGAATAGTTAAACAGACATTCGGTACTTACTTGACTTGTGGTGTAAT
CGGAGTGAATTGtcaattttgaattctttgCGCATTTTAGCTCTTGTTGG
GGTTGAACCtgtcaaaaaagaatgaatatcaaaaaatatttttcatttta
cggCCGCTCCTAATAATTacgcattgccaaatttggttctccattgtcaa
gtcaggatcgatggtgacgtcacctaagcataaaaaagaaaggattttgt
cagttttcgtagactagttggaatatatacttttttttactcgcaggatt
gatggtaacttttcatattcgttatttttaaaatgaagcacaaccgaaaa
aaaaacgaaacttcagaaagttgcgtatgtCCAGTGAGTAAACAATTCTg
ccaattaacaaaattgatgatgatgatttttttcggtcaggcaaatgtct
cgtattgggggttctagtcttgatccctaagcctacgcgagattgaagcg
tttgggtaaaagagacaaaaatccaagctggtgttttgaagcgcttctgt
gcgatcgaaatatcgctgtttgtgacgcactgtcgATGGGATTACCAAAT
AACGAGCGTGTAACTTGCCGCGTGAGTGACATCAAATGCTCCATATCGTT
Ttaccactaatttggtcttctttgttccagacatttgcgtgtgttccact
acagatttatttcatatttcgatttaaaagcctactgtaagttggtctaa
tgtcgacatccctcgtctaattccgacatccttttttagagacaggaata
atatgaaagcttgaatcactgattgaaaaagaataattcctctctgacca
ttaagcaaagaaaaacagtttcaacctttccatcaatttcagctgataaa
aagggtgtctaAAATTAGAGGAAGGAtatcgacattagaccaagttacag
tactcggtgcaaaagagaaattgtatatttttaatacgccgttcattaac
tcaaatcaaatgactgtGGAGGttcgatgaaaatttcattatggtggccg
aattgccatcccatttttgtcagatagtcccaagttagagcagttgacgg
tatcaaGCTGGGTGTCCACTGCATAGTGTGTACCCCCCAGAATAGTGGGG
GGGTTTGGTGTTTTAGGTCAAAGATTTCCAGGTAGGATTTGGAAGTTTTc
aggttttaaggtgtttttacaatgttttggttttatttttaaaattttga
gtttggatacccaggctagtgTACCATACTTACCTTACTTGaattccttg
aaacccttgaaacacccttgattTTTTTCCTGCCCTTGAAACtttccttg
aaacccttgaaaaatcaatattattGTGGGGACCCGTGAGGTGCAAAATT
TATACCCTTGAAATCCTTGAAATCCCAAATTTTGTGGCCATTTTAActtt
cagaaataaaaaatttttcccaCTGCGTAGGATACAAACATCAGTGAATC
AAATGAGAAAACATTCTTTTGGAATCCCTGTGGTTCAAGGGGATATTCCC
CGCTCATTCTAAAGGGGTTTACCCCTAAACCCGTTAAGGTTACAGATAGG
GTtcctttgaagaaaatatttttttttcatcaaaaagaatttttttgctg
taaaagaTTCGTAAAAACGGACCATCGAATGATGCATCTCCCTAAACCTA
AAAGTgtatcaaaattgcaaaaaatgctaaaaacattATCGATGTATAAG
AAAACTGTAAAGGGAAGTTTAAAGCGACGCTTCTTTCGATATCCCTATTA
TAAAGTCTTACAATGGAGTAATGGTctttttacttttcaataaaagaggG
AGGAATTTTTCGGTAaagataaaaagattttaaattttgaaatatctcag
aatcacaatttcttcaaaaatccagTGTACATACCAACTTCGAAAGGTTA
CTCTACAAGATCTGGTTGGTCGATATTTCTGAAACCTACGTCATTCTGTT
CAGAAAAGGTTGAATGGCAAAACCGTGCCTCCGATTGTTGATTCGAGGTT
TTGTTGTGGAGAAAACTCGCTTGTGATAGAATGGGttgtaaaattatcaa
ttatcagcCAATCTAAAGCActtaaaatcaaagattttctccGTCTATGT
TGGGCCCTCCTTTACCACAACTATAAAGAAAGTAGCTGTTGAAGAATGTT
ATCGAGGTAGATCGAGGTTCTGTTCATAATCAAGGGGATTGAAAAGACTA
ATTTGTTCAAAAGATTTCAaggtttttatgattttgttaaaGAAAACGTC
TTAGGGGTATTTTATGCATTTTAAGGGAGTTGAGGATTCAACCTTGAGAG
TTGAAAACTCAACCTTTCTCCCACTGTCCACAGATTTCCTTGAAATCCTT
GAAAACTAGCAAAGATCAACTAAAAACCCTAGAAACCCTTGAAAGTTTGT
GGTAAAAAACCCTTGGAATTCTGGAAAACTAGTCAAAACtgacccttgaa
acccttgaatttgttgaaaaagaagtGCTGGCCACCATGAcccataacaa
tccaaaagtccCCCTAACAATCAAAAgcaccaaaattgtaaaaactcTGA
TATTTCTGTGGTATAGCCACTTTTTTGcagttttggtgtttttgattgtt
aagggaGCGTTTACATTGATATGTGTAAGTATGGTATATAAATGTCATCA
AAAAACGCCTGGTATTAGAAGTTAGTCAAAAGTTAGTTTCccccaaatat
ttgaaacatcATTAGCCCCCACCTTTTTAGGGCTTTTTTGAGGATGTAAC
TAGCAGGGGGCTGGCACTGTGCCCTCCAAGATATGAACAGCTCTTAAAAC
GTCACTAAACATCCGAAGtcttttttggaccaccctgtaAATTTAATGGG
GATTGTCGACATTAAACCAACTtatgtgtttgttttttttcaatttcagt
tcTTCAGAAGGAAATACATTATGGAGAAAGTAAAATTGTTCTAGATAATT
TTCACAAAGAAAGTTTGTTCAATAATTATTGTCGAAGGTTTGCACAAAAT
GCTACAGCTCGTTGAAACTGCAACCTGTCTATATGTAGCCAGATGTAGCA
TTTGCTTTGCATAATGTTACATTATTTAGACTCGAATATTCAATTGattc
aaattttgcatttaTAATAAGCTACCACATTTTAAAATAACATAATAATT
AGACAGTACATATACAGTATTTAGACAGTATAATAAGACATCATTTTCTC
CCAATAAATATGACTTGAAAAACGAATCATAGCCTTCCATGAACATCAAG
TACTGATAGATACAATTTTAGAGATActtattcaaactttttttagctGT
TAAAGCATAATGATTTGAGTTAAGTTGTTTTTAGGACATGAAACttggat
attcaaaatctactcaCAATTCCACTTCCACTGGTATATAACCTGATAGG
CTTATTTTCAGGttacttttgttgtttttttggatttcagccTAAAAATG
ACCCAATATTGGCCCAAAAAGTGATGCCCAGAAATCACAAATGTGaaata
agaaattatttttctgaatttgtaagaaacattattattttaatgtcaaG
TTGTCATAAAAACATACAAGAATGAAAAAATTAACTTCGAGAGTTAAAAC
ATGCActaaatcctaaaaaaaggccgggtttttccaaaaatagaccTCAA
GTTCATTGTAATTCTGGATTTATGACTCAATTTTTTGCATATTCTGATGA
ACTCTacctatttgaagaattttcaatcAAAGAAATCTCAATTCAAATAC
AATTGACGAAAATATAGGGGGATTTTGACATAGGCccaaattttccgtca
cggcgtgacaaaaactaaaaagggcctacagaaaatcttgtgggttgatt
tttggatttcttttttaGGTTTCGGATTAACACTAATGGGTTGATGTTTC
ATGGAGAAAATGAAGACCTGATTCCACTCTCATAGGTTTTTACAGGCTAT
TaaaaattttccgtcacggcgtgacaaaaactctGACCTAGTACTGTCAG
TGAAAAATGGATTTGAAAGCCTCAAATAATAGATTTAACCAATCCAAGTC
CAATAGAAAGTTGACTCAGCTTGCAAAAGAGCCCTTTTGATTAGTTTTTT
GAATCCATACCTGAAAAAAACCCTGTAACAAAATAAGGTTTTGGTCCGAa
gcagttttttgttttttttcagtacCGTAGCAGCGGGCTCAGATCTAGCT
CATGTTGACTTTTTGGGAACATATGCATGTTATATATCAAATTGTCAGAA
ATTTCATGtggatttcaaaaatggttaaaaataggggttaaaaatgaagt
caatgagaagaaaatgctattttttcatCCTATTTTGGCCtgcgatttta
caaaaacctaaaaaatgcgataaaagttttttaaagcaaGGTTTTTTaag
ctctatttttttttctttttgctacaaaataccatagtttcccataaaaa
taggttttagagagatttgaagaccttcattttttgacatttttaaaatt
tttgggtacGAGCTTCTTGCTTATAGCTACGTGGTCTATTTTCCAACATA
ACGTAATCGAAAACTTCACGTCATTTAAAAATCCATAAAGAGAggtaaac
aaaacattttaaaagtctTCAAAttgattgtgttttttttttcggtttaG
AGGACTATGAATTTCCACGGGATTGAGGTTTAAGTTTGGAAGAAAAACTT
GCTTGTAGGACGTTGCTTGCTGTGATGCGATTCCTTTGCACCACTTCTAA
ATCTGATCTATTAATGGTGGGTGGCACGTGTGCAAAGGTTTGCAAACTGT
TCATAATTGAACCATTTGACTTTACTACAGTACCGCATGGTATTGCTTTA
AATTTGGTATTTATTCATAACCACAACTTTAAAATATTAAGCGCAGACTG
TTAACACCTCAGGGGCCCTGTGCACTCATATGGTTAATAAGttattttta
cacaaaaaaCTAATCAAATGTGTACTTCTAGCACGAAGatctttcataaa
aaataatacccttttcaatatttctttCAAAGGTATCAACTTGAAGCTAA
AGTTCAAGAAGCTCTTCAAGCAAAACGAAAACGGCAGGACATCAATAGCA
TCTTTGTAGCCCTCATATTTTGTATATCAACACTGACAGTTTTTGGTGCT
GTTGTCCAACAAAACCTCCCTTTCATCACAAGCCAAACAACTTTCATCAA
TGGTAACTATGTACACCATCGCTTCTCAGAGATTCTGAAATTGAAAGAAC
TGATTGCGAATCGATCTACCAATTTTTGGTTTGCTGGTAATTCTCTTGGA
TATCCGTTTATGACGACACAACCACTTCCTTTCTTCTCCACTGCTTTCTT
TATGACGGTAGcagaaaggtttgttttattttctattaCAAGGTTAAACA
TATCTTTTGAAATATACCTATCTATTGCATCTAACCTGAAAGCTGTCTAA
CCGTCATGGAGCTTTAACCATTCTAGGTCATGTAGACCTAGACTCATGTA
GACCGTTATTCCATTGAGCTTACTTTCCGGGCGGGATGACTTTTCAGACA
ATACGCATGCACAGTGTATATTTTTGACATCATCTGAAATGAAAAACTTC
GACTCGTGCCCAAAATAAAAAGTAGAaccattgtttgttttttctagTCT
CAGCTCAGCTGAAAAAACATCCAGTCAGGGGAAACTAAGATCAATATTGT
TTCAATAGAACATGCACTTCCTGGCATTTCAACATTAAGGTTTCATGCTT
TTAAGACTTTCACCATTCTTGTTTTTCAGATTTCTTGGATTATCCGCGCT
ATGTTTCATGAGGAATTACATGCTGATTTTAGTCATAGCTCTCCCTATAT
CCTGGTACATTGGTTGCCGTAAAATGAAAGCATCGCGTGTTCAGAGCTTG
TTCACTGGCCTCTCTGTATTCTTGATAACGAGTCAGCTGCAGAACGGATT
TGAGATTCATGAATACTTGATTGAAggaaatgtttgtttgctttaCGCCC
ATCTGTTGTTCCCACATACAGGtaatttttttggacctacctttggggtc
ctataaattaatTATTATGATCCTTGGCTGAAAGATAGAGGGCAATGTTC
CCAAAAAAGTGGCTGAATGAAGCCGTTTTTtaccggaaaatattttttcg
gcGTTAAAATCGGGttattcactttttctttttcatattgaAATACCTAA
TGTTCAAATTTCCAAAGctattcaaaaagtctctcaaatCATCCTCAAAT
ATCACAAGAAATGTTTTTCgtctaattttccttggaaaatacaactTATT
GTTTGAAGGATATTTTCCTTGGAATATACGATATTTTCGATGTGATTGTG
TTCGATCTTTCAGGATCTTTTTGGTCGAAAGATCTAAGGGATGATTGTAA
AGATtacctttaaaaatatttgcCTACTCACTATTTTCCCAAGTCgaaag
tttttataattttctcgcaaatattttttcttaacCTATCTTTCTGACAG
TGTTTCTGATAATACAATCGACAATTTCGGCAACAAAACATCCTTTCTTT
TTTCCTAGTTGCGCAGATTTATCATCACGCTTTCCATCCTGACACTACTG
AATCTCCATTCTTCTTACTATGCTTAACATTCCTTTGTTCAACATTCACT
GGCATCTACTGTTCATTACTGAGTCTGACATCGAGTCTGGCCGTTAGTTG
CAGTGGTATCAACCAAAACATATCCACTAAAAGTGTAATCAAATCATGGC
TTGGAATGAACTGCAAAGTTTTATGCTACATATCATGGATGATTATCCCT
ACTCTCATTTCTTTACCATATTTCGGTGCACAAGTCCGAGAATCAACGGG
TGGATTCAACATTCCCAGCTTGGTCAATATGCTCATCAATGGTAACCTGT
TTGATTATAACCAAGGTCATTATTACATGACTCTGCTGGTGACCTCAGGA
ACAATCTTATCCCTAATCCGTTGTTATTACTACTACAAATCGAATCTGGC
AATCAAGCTTTTGAACCGTCAAGCAACTTTTATATGCTGGATCTTGGGAA
TGTCATTTTTCTCCATCTTACTTTATGTGGATCAAAAGGTCTGGACAATG
CTAACCAACATGTTGCCGGTGAACTTCAGTCTCAATAAAAGTGCATCCAT
CATTGGCCTTCAAGCTTTTGGATGTTTCTTATCTGGTATTTTCCTTGAAA
AGCTTGTTGAGCTGTTTTGCACGAGCTCTATTGAATTTGATAACTGGTCC
AAAGGGAATTTAGCTTCACCTCCTGACTTGTACAATTACAAATGGAAGAA
AATCACCGCAGTAGTGTTTATTGGGTTGGTCATGATTAAGAGTGGAGCTG
ACCGTGTCTGTGAGAAGACAGCGTTGTTGGAGATGAATGAGACATTCGAA
CAGGCAATCGAGGAAATGACATCTAAAAGTAACAACAAAGAGGGTAGAAT
CTTAACCAATATCAAACTAGGTATGCCGTCTGTtggttttttattataag
atcAATGGAGAAAAAGACAATAAATCCAAGGTTCTTTTATAGATCTTTCC
TTTCTTTTAAAACAATGAGATATGATTGATTTTTGATGTTGATCATTTTT
ATCATATAGATATTCTCATGTTATGACCAGTGTTGTGGACCTCAGTATAA
CGATTTTCCGATGCATAACGTCAACGTCACTTCGAAAACGTGTGTTGTAC
CCTGTACCCTGGCTCAATCACTAATCAGCAATATTATTTCAATGTTTGAT
TCTCTTTTGTTAGGTTCAGGAAACTCATGGGATTTGTCAAATATTCCAAT
CCAAACAAAATTACCAGGTATTCATTTTCTTATTAAAATCGTTCAACAGA
TTTATATTAACACAGATTAAATATGCTTGTAAATCGTTTTTACTGTCCAG
TAGAATCTAACAGTCCAAAGTGTCTTTAAAATAGTTATTTATTAAAACCA
TTCGCAAAAAAGTGATTGCATCGAAAGTTACAACCTCTTAAGGTGGCTCG
TTGGAGTGGGAAaactttttcttgctatttCTTTGCACTTAAACGGACCC
CCTTTTAGAGACAGTaacttttttctatatttttaggGGCGATGTCTTAC
TCATCTGAGTGGTATGACAGTCTATCAGTGTTCTATGTCGATTCCATCAA
ATTCCACAATGTTAATATCATGGACATGAAAAAGATCTTACAGCTATATA
ACATTCGATATTTGGTTCTATCCACTCATATTCTGAATGCAAAGTTCCAG
GACTTATCTCATTTCAAGACGCTGGCACAGTCTGATGATATCACCTTCCT
AGAGGTTGTGTATGATTTCACCAAGAGGCGTCCGTCATACTTCGACATGG
TTCACCTACCCGGCTTTGTCAATGGGAATCTGAATAATATGCGAGAGACA
GTACAAAGGACGCTTGAGTTGTATAAAGATAACGCCTTGTTGTATTTGAA
TCCAAGACAAGGCAATCGTGTCAAAAATGAAGGCATTATCAATGTCCAGG
TCAGTACTTTATCCAATAAATGATAGTATCGAACAAAGTTGTTCAAAAAC
GGAAAGTTTTAAAGCTCTTTAAGGGCTTTCTAGCTGGCTCCAGAACATGT
TTGATTTATTTAGGATTAttgtaaaaaatctggaaatgaGTTTTTTCGAG
AACACTGTAGGCTTATCACtcagaaaaatattgttaactCACCACTCAAA
CTACTCAAAGCGCACCAAAAATAGaaggtttttaaaaactttgacgTTCT
TATTACTTGTATAGCGCTTGGTGTCCATACGCCCATTTATTTAATTGATT
GAGTGAAAACCTCTTTTTATCAGAACTTTGATAGCCCGGAAAAAAATAAG
ACTGCAAGATCCCCCCGTCTTTTCCAGGTGATGAGGATCCCAACAAACAA
TGATGCATCATTGGTGACGTGGCGAATGAACGGTCAAGGGATGAACTCTG
AAGAAATCATCAAACAAATGCATTCTTCATACGAAGATCATTATGAAGAA
GAGTATGACGTCATCCAATCCAAAATCATTGAAGAAAAGAATAATGGACT
TGAATATCATGTTATTGTTGAGGTCAATCACAATCCATCGGANN

Coding sequence (CDS) from alignment at sc0000019:887879..900122+

>TCONS_00002278 ID=TCONS_00002278|Name=TCONS_00002278|organism=Clytia hemisphaerica|type=CDS|length=2199bp|location=Sequence derived from alignment at sc0000019:887879..900122+ (Clytia hemisphaerica)
ATGAAAGTCAGAAGTGATAGTCCAAGGTATCAACTTGAAGCTAAAGTTCA
AGAAGCTCTTCAAGCAAAACGAAAACGGCAGGACATCAATAGCATCTTTG
TAGCCCTCATATTTTGTATATCAACACTGACAGTTTTTGGTGCTGTTGTC
CAACAAAACCTCCCTTTCATCACAAGCCAAACAACTTTCATCAATGGTAA
CTATGTACACCATCGCTTCTCAGAGATTCTGAAATTGAAAGAACTGATTG
CGAATCGATCTACCAATTTTTGGTTTGCTGGTAATTCTCTTGGATATCCG
TTTATGACGACACAACCACTTCCTTTCTTCTCCACTGCTTTCTTTATGAC
GGTAGcagaaagATTTCTTGGATTATCCGCGCTATGTTTCATGAGGAATT
ACATGCTGATTTTAGTCATAGCTCTCCCTATATCCTGGTACATTGGTTGC
CGTAAAATGAAAGCATCGCGTGTTCAGAGCTTGTTCACTGGCCTCTCTGT
ATTCTTGATAACGAGTCAGCTGCAGAACGGATTTGAGATTCATGAATACT
TGATTGAAggaaatgtttgtttgctttaCGCCCATCTGTTGTTCCCACAT
ACAGTTGCGCAGATTTATCATCACGCTTTCCATCCTGACACTACTGAATC
TCCATTCTTCTTACTATGCTTAACATTCCTTTGTTCAACATTCACTGGCA
TCTACTGTTCATTACTGAGTCTGACATCGAGTCTGGCCGTTAGTTGCAGT
GGTATCAACCAAAACATATCCACTAAAAGTGTAATCAAATCATGGCTTGG
AATGAACTGCAAAGTTTTATGCTACATATCATGGATGATTATCCCTACTC
TCATTTCTTTACCATATTTCGGTGCACAAGTCCGAGAATCAACGGGTGGA
TTCAACATTCCCAGCTTGGTCAATATGCTCATCAATGGTAACCTGTTTGA
TTATAACCAAGGTCATTATTACATGACTCTGCTGGTGACCTCAGGAACAA
TCTTATCCCTAATCCGTTGTTATTACTACTACAAATCGAATCTGGCAATC
AAGCTTTTGAACCGTCAAGCAACTTTTATATGCTGGATCTTGGGAATGTC
ATTTTTCTCCATCTTACTTTATGTGGATCAAAAGGTCTGGACAATGCTAA
CCAACATGTTGCCGGTGAACTTCAGTCTCAATAAAAGTGCATCCATCATT
GGCCTTCAAGCTTTTGGATGTTTCTTATCTGGTATTTTCCTTGAAAAGCT
TGTTGAGCTGTTTTGCACGAGCTCTATTGAATTTGATAACTGGTCCAAAG
GGAATTTAGCTTCACCTCCTGACTTGTACAATTACAAATGGAAGAAAATC
ACCGCAGTAGTGTTTATTGGGTTGGTCATGATTAAGAGTGGAGCTGACCG
TGTCTGTGAGAAGACAGCGTTGTTGGAGATGAATGAGACATTCGAACAGG
CAATCGAGGAAATGACATCTAAAAGTAACAACAAAGAGGGTAGAATCTTA
ACCAATATCAAACTAGGTTCAGGAAACTCATGGGATTTGTCAAATATTCC
AATCCAAACAAAATTACCAGgGGCGATGTCTTACTCATCTGAGTGGTATG
ACAGTCTATCAGTGTTCTATGTCGATTCCATCAAATTCCACAATGTTAAT
ATCATGGACATGAAAAAGATCTTACAGCTATATAACATTCGATATTTGGT
TCTATCCACTCATATTCTGAATGCAAAGTTCCAGGACTTATCTCATTTCA
AGACGCTGGCACAGTCTGATGATATCACCTTCCTAGAGGTTGTGTATGAT
TTCACCAAGAGGCGTCCGTCATACTTCGACATGGTTCACCTACCCGGCTT
TGTCAATGGGAATCTGAATAATATGCGAGAGACAGTACAAAGGACGCTTG
AGTTGTATAAAGATAACGCCTTGTTGTATTTGAATCCAAGACAAGGCAAT
CGTGTCAAAAATGAAGGCATTATCAATGTCCAGGTGATGAGGATCCCAAC
AAACAATGATGCATCATTGGTGACGTGGCGAATGAACGGTCAAGGGATGA
ACTCTGAAGAAATCATCAAACAAATGCATTCTTCATACGAAGATCATTAT
GAAGAAGAGTATGACGTCATCCAATCCAAAATCATTGAAGAAAAGAATAA
TGGACTTGAATATCATGTTATTGTTGAGGTCAATCACAATCCATCGGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001207XLOC_001207Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002278-proteinTCONS_00002278-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002278-exon-sc0000019-1491911889:887879..888184TCONS_00002278-exon-sc0000019-1491911889:887879..888184Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1510915933:887879..888184TCONS_00002278-exon-sc0000019-1510915933:887879..888184Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1575043694:887879..888184TCONS_00002278-exon-sc0000019-1575043694:887879..888184Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1491911889:896061..896396TCONS_00002278-exon-sc0000019-1491911889:896061..896396Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1510915933:896061..896396TCONS_00002278-exon-sc0000019-1510915933:896061..896396Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1575043694:896061..896396TCONS_00002278-exon-sc0000019-1575043694:896061..896396Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1491911889:896808..897049TCONS_00002278-exon-sc0000019-1491911889:896808..897049Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1510915933:896808..897049TCONS_00002278-exon-sc0000019-1510915933:896808..897049Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1575043694:896808..897049TCONS_00002278-exon-sc0000019-1575043694:896808..897049Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1491911889:897587..898498TCONS_00002278-exon-sc0000019-1491911889:897587..898498Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1510915933:897587..898498TCONS_00002278-exon-sc0000019-1510915933:897587..898498Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1575043694:897587..898498TCONS_00002278-exon-sc0000019-1575043694:897587..898498Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1491911889:898792..898845TCONS_00002278-exon-sc0000019-1491911889:898792..898845Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1510915933:898792..898845TCONS_00002278-exon-sc0000019-1510915933:898792..898845Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1575043694:898792..898845TCONS_00002278-exon-sc0000019-1575043694:898792..898845Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1491911889:899115..899527TCONS_00002278-exon-sc0000019-1491911889:899115..899527Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1510915933:899115..899527TCONS_00002278-exon-sc0000019-1510915933:899115..899527Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1575043694:899115..899527TCONS_00002278-exon-sc0000019-1575043694:899115..899527Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1491911889:899906..900122TCONS_00002278-exon-sc0000019-1491911889:899906..900122Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1510915933:899906..900122TCONS_00002278-exon-sc0000019-1510915933:899906..900122Clytia hemisphaericaexon
TCONS_00002278-exon-sc0000019-1575043694:899906..900122TCONS_00002278-exon-sc0000019-1575043694:899906..900122Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:887879..900122 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.5587	0.812122	0.18859	0.184506	1.6013	1.61482	0.642426	1.20286	0.750372	1.04313	0.3375	0.443718	1.99395	2.07074	0.851216	3.95843	0.50015	1.41743	0	0.37056	0.966251	1.67976	1.66525	1.87273	16.4524	11.3317	0	0.182888	0.739484	0.376709
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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