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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003285 ID=TCONS_00003285|Name=TCONS_00003285|organism=Clytia hemisphaerica|type=transcript|length=3413bpRun BLAST on NCBI protein sequence of TCONS_00003285-protein >TCONS_00003285-protein ID=TCONS_00003285-protein|Name=TCONS_00003285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=771bp MSLTGASSSARSSKSTNLEQIWDDLKEGIQQIYLKQNMPKKRYMQLYTHVRun BLAST on NCBI transcript from alignment at sc0000026:507598..530842+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003285 ID=TCONS_00003285|Name=TCONS_00003285|organism=Clytia hemisphaerica|type=transcript|length=23245bp|location=Sequence derived from alignment at sc0000026:507598..530842+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000026:507598..530842+ >TCONS_00003285 ID=TCONS_00003285|Name=TCONS_00003285|organism=Clytia hemisphaerica|type=CDS|length=2316bp|location=Sequence derived from alignment at sc0000026:507598..530842+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003285 vs. Swiss-Prot (Human)
Match: CUL1 (Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2) HSP 1 Score: 1132.86 bits (2929), Expect = 0.000e+0 Identity = 554/763 (72.61%), Postives = 649/763 (85.06%), Query Frame = 3
Query: 147 NLEQIWDDLKEGIQQIYLKQNMPKKRYMQLYTHVYNYCTSVQ--NQTQNQRISKRKSA---NQGGAQFVGAELYKRLKDFLKTYLTNLLRQGIDLMDESVLTFYTQQWEGYKFSSKVLHGICAYLNRHWVRRECDEGHKNTYEIYNLALVTWKDVLFKALDIKVTNAVLELIKRERNGETVNTSLISGVIDSYVHLGINEEESRSNGPTLSVYRLHFEANFLTDTEQYYTAESNAFLAENPVTEYMKRAEARLKEEQRRVQVYLHESTQIELAKKCEQVLIEKHLDTFYTEFKNLLTDDKNEDLGRMYSLTARVPDALGTLKQLLEEHIYSQGLDTIEKCGESALNDPRLYVTTMLGVHGKYHGLVSSSFNNDSGFVAALDKACGRFVNANAVTKQASSSSKSPELLARYCDSLLKKSVKNPEEAELEDILNSVMVIFKYVEDKDVFQKFYSKMLAKRLVQQNSASDDAEATVITKLRSMCGYEYTNKLQRMFLDVNVSKDLNEKFKSHIQRSETDSLNLDFSVQVLASNAWPFQQSATFALPTELEKCLQRFTTFYSAQHSGRKLHWLYTLSKGELVTNCFKNKYTLQASTYQMSVLLMYNDQDSYTVEQIHEHTQIKMDLLPQVLAILLKIRILI-SDKPMGDGQIDLNAN--IRLYKDYKNKKLRVNINVPMXXXXXXXXXXXHKFIEEDRKLLIQACIVRIMKMRKVMKHQHLLTEVLTQLSSRFKPGIPVIKKCIDILIEKEYLERVEKEKDTYSYLA 2411
L+QIWDDL+ GIQQ+Y +Q+M K RYM+LYTHVYNYCTSV NQ + + KS GGAQFVG ELYKRLK+FLK YLTNLL+ G DLMDESVL FYTQQWE Y+FSSKVL+GICAYLNRHWVRRECDEG K YEIY+LALVTW+D LF+ L+ +VTNAVL+LI++ERNGET+NT LISGV+ SYV LG+NE+++ + GPTL+VY+ FE+ FL DTE++YT ES FL +NPVTEYMK+AEARL EEQRRVQVYLHESTQ ELA+KCEQVLIEKHL+ F+TEF+NLL DKNEDLGRMY+L +R+ D LG LK+LLE HI++QGL IEKCGE+ALNDP++YV T+L VH KY+ LV S+FNND+GFVAALDKACGRF+N NAVTK A SSSKSPELLARYCDSLLKKS KNPEEAELED LN VMV+FKY+EDKDVFQKFY+KMLAKRLV QNSASDDAEA++I+KL+ CG+EYT+KLQRMF D+ VSKDLNE+FK H+ SE L+LDFS+QVL+S +WPFQQS TFALP+ELE+ QRFT FY+++HSGRKL WLY LSKGELVTNCFKN+YTLQAST+QM++LL YN +D+YTV+Q+ + TQIKMD+L QVL ILLK ++L+ D+ +++L + I+LY YKNKKLRVNINVPMKTEQKQEQE THK IEEDRKLLIQA IVRIMKMRKV+KHQ LL EVLTQLSSRFKP +PVIKKCIDILIEKEYLERV+ EKDTYSYLA
Sbjct: 16 GLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSE--PLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776 The following BLAST results are available for this feature:
BLAST of TCONS_00003285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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