TCONS_00003465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003465
Unique NameTCONS_00003465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3050

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003465 ID=TCONS_00003465|Name=TCONS_00003465|organism=Clytia hemisphaerica|type=transcript|length=3050bp
ttgaaatcaaaatggtagagaaGACGCAAACTAATTCATGTATTTCCGCT
AAAGATTTTGCTAATTTCAGGCtaatgaatttaaaatatatGGAATAGTT
ACGGAGAAGATTTTTGCAGTGAATATTGATCGAAGATGAAATGCGAATTT
TTGGCAATGGAAGCACCATAGCATATTTATATTCGCACTTGATCTTTGTC
ATCTTAACTAGTGGAAAGCATACAAAAGACTCAGCCAAAAACAATCTTTT
ACCAAATGGGAAGTTCGACGCCACCTTCACTCAGACTGGGATCGAACTGC
GATGGACATGTCAAGGAGAACAGGCTAATTTTTCACCAATGCTTCGAACT
GTGATGTCATCTGTATCCAAACCCTATGCTGGACTTTGTACCCAAAGAAC
AAGCNATGATGTCATCTGTATCCAAACCATACGCTGGACTTTGTACCCAA
AGAACAAGCTTCTTGCAAGGCCCCAGTATCGATATACGCAACCTGGTAGT
GAGAGATGGTTTGTATCGTGTCCAAGGATGGACCATGTTGACCAAGGGAA
CAACAAAAGAACAATATGATTCCATCGAACTCTGGTTAAGGTGGAAAGTC
AAAGGAGCCGAAGAAGATAGCAAGCTGCTTGGTGTGAGAGGCAAATTCTT
AAAAAATGATGATTGGGTGTTCTGGAAAACGCAATTCCATCTTCTCGATT
CACCGCTACCTTTTGATTACGTCATACTCTGCTTCAAAGGACCACCGGCT
CATATGGATATcttgattgatgacgtcacgtTAGTACCCATACCTAAGCT
TGCGGATTGGCGGGAATATTCTAACGACCGAATTGATGATATCAGGAAAA
GAGATGTTGTTCTCAGAGTGAAGTTTGATCCAGAGGAATACCATGCGATG
GATCTGATTACTACCACCACATTAcagGTAAAACAGACTTCCAGCGATTT
TGGATGGGGCGGTTCAGTTCATTTCGAAGCCATCGAAAACAATCCAATTT
ACCgcaattttattgaaaggacTTTCGAATGGGCGACCATGGAACACCGC
TTGAAATGGCCCTTTATCGAAACCCTCCAGGGTGTTGAGGATTATTCGAA
AACAGATGCCATGCTGCACACACTGCAAGATGGAATGAAGATGAAGATAA
GAGGTCATTGTATTTTTTGGGCGGTTGAAGAAGAACAACCAAAATGGTTA
TTGAAAGCGGATCCTATGCAATTGAAGGGCGCTATGTGGAGAAGGCTTCA
TGATGTGTTGACCAGATACAAGAATAGAATAAGAGATTGGGATGTGAACA
ATGAGATGTTACATGGTTCGTTTTACAGCGATCGCATGAATGAAACGATA
AGAGATTGGATGTATTACGAAGCACACCGCATTTTCCCTCGAGGACAAAT
GTTCGTTAATGAGTTTGAAGTTCTGTCAGCACCTTGGTATACACAGAGTT
ACGTGGATCAAATTCGAAGCTTCTTAAAGAAAGGGATACCGATAGATGGA
ATCGGTGTTCAAGGACATTTTGCTGGTCATGCACATCCAGAGATACTCAA
GGAAAGATTAGATGACCTTGCAGTATTGGGATTACCTATTTGGATTACGG
AACTTGATGTTGTTGCTGAGAATGACGTCAAACGGGCCGAAGTTCTCGAA
AAAATCATCCGCGTAGCGTACGCGCATCCATCGGTACAAGGGATTGTTTT
ATGGACATTTTGGGATAAACATGAATGGAAGAAAAACACGTCACTGTTTG
AAGGTCATTTTTTTAAGCCAAATGAAGCTGGAAGAAGATACTTGAGAATG
CGTAATGAATGGAAGACTGACATAATTGACCGTCAACCAGATGACGTCAC
GTCACATGATTGCGTGTTTCGGTTCCGTGCATTTCATGGTGAACACGTGA
TCAGAATTCGATTACCCGATGGTAGTGTCTTGGAACAAAACGTGAATATT
CGAAACCATCCAGGTGAATTGGAACTTGTGTTTAACAAACAATCACCAGA
TATAAAAGATGCACCTGATTGAAGTGAATTCGAATGGTATATGACTGGAT
ATTGGTGCACGAAATGTATCACCATGTAACCAAAATGGTGTTTGCTTCTA
TGGTGAAATACTATCACAAGGAAGTGCTAGCCAACAACTATAAACTTATT
ATAGAGGCTTTTTATGCTTTGTTAAATTACGTAATTTCCATAATTATGGa
aacaaacgttcgatttgtgtAAGGGATCCcttctacagattcgaacgttt
gcttccataatggtggaaatcaGGTAGCTTAACAAACttaataaaacatg
aaaaacttaTACCGCCTGTAATACAGGTTGTTGAGGACCTTGTATGGCAA
ACATGAAAAATAGGAAAACGTTTAGTGGTACGTAAGAGAAAGAAGTCCAT
TTGAGAACCGTTTCAGAACAGGCGATCTGATAAAAGATATCGAACATTGC
TTTGTAGATTGGTTCTGAAATTATATATTAAAAAagaatctttagaaaaa
tataagaaattatCTATCTGTGTCCTACTAACTATATACATTTgtcgtga
aaaaaaaatttaagtatAAGGTAACTGAAACATAATGAAAAAGTAATTTC
GAAAATCATAAATGGACTTCGTCACCTTTGAAAGACGGGTTGAAGTAGCT
AATCTTGATGTCTGTGACTCGAGTATCTTCCTTAAAGACGTCATCGTTAG
TTTTAGAGTGATTTCCAGTTTCCCCGATTTGACCATCTGGGTTATCTTCG
GATTCGGATTTGGGTTTGTTATCGAGGTGGGATGGGATTTTGAATGCGAT
GATGGAATTGACAAACATTGAGACGATGGCAATTACGAAAAATGGAAAGA
AATTATTGAAAGGAAACCCCAGAGGGTTGGAGTTTCCTTTGATGCCCTTG
ACATTGGTCAATGACCAGGATTGAAGCGAACCAACAATAGNCTccccaaa
ttttctaaaaataggcaccctacgagggactgatttttctattttagtgt
ttttgcgaccctacctgggactcgtggaggttaaaaaaggtaccctgacc
Run BLAST on NCBI

protein sequence of TCONS_00003465-protein

>TCONS_00003465-protein ID=TCONS_00003465-protein|Name=TCONS_00003465-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp
MLDFVPKEQXMMSSVSKPYAGLCTQRTSFLQGPSIDIRNLVVRDGLYRVQ
GWTMLTKGTTKEQYDSIELWLRWKVKGAEEDSKLLGVRGKFLKNDDWVFW
KTQFHLLDSPLPFDYVILCFKGPPAHMDILIDDVTLVPIPKLADWREYSN
DRIDDIRKRDVVLRVKFDPEEYHAMDLITTTTLQVKQTSSDFGWGGSVHF
EAIENNPIYRNFIERTFEWATMEHRLKWPFIETLQGVEDYSKTDAMLHTL
QDGMKMKIRGHCIFWAVEEEQPKWLLKADPMQLKGAMWRRLHDVLTRYKN
RIRDWDVNNEMLHGSFYSDRMNETIRDWMYYEAHRIFPRGQMFVNEFEVL
SAPWYTQSYVDQIRSFLKKGIPIDGIGVQGHFAGHAHPEILKERLDDLAV
LGLPIWITELDVVAENDVKRAEVLEKIIRVAYAHPSVQGIVLWTFWDKHE
WKKNTSLFEGHFFKPNEAGRRYLRMRNEWKTDIIDRQPDDVTSHDCVFRF
RAFHGEHVIRIRLPDGSVLEQNVNIRNHPGELELVFNKQSPDIKDAPD
Run BLAST on NCBI

transcript from alignment at sc0000028:843978..857466+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003465 ID=TCONS_00003465|Name=TCONS_00003465|organism=Clytia hemisphaerica|type=transcript|length=13489bp|location=Sequence derived from alignment at sc0000028:843978..857466+ (Clytia hemisphaerica)
ttgaaatcaaaatggtagagaaGACGCAAACTAATTCATGTATTTCCGCT
AAAGATTTTGCTAATTTCAGGCtaatgaatttaaaatatatGGAATAGTT
ACGGAGAAGATTTTTGCAGTGAATATTGATCGAAGATGAAATGCGAATTT
TTGGCAATGGAAGCACCATAGCATATTTATATTCGCACTTGATCTTTGTC
ATCTTAACTAGTGGAAAGCATACAAAAGGTAAATTtcttttcctttaaaa
ttgaGAATCTGTTTTTGTGTTTGAAATATAAGGTGTGTGTCAATCTTCCA
AAAGCTCTCGGGAATAGGAATATATTTTATGAAGATCAAGAAGGGAAATC
TTTAATCAGTAAAGACCGATTTCTCGACAAAATTGCCAATCCCGGGGTTT
TTTATGTCCCTTTTATGTTTCAGAATCTTTCAACCTCAAGGACTTATCAT
AAGGGTAGAGATGTATGTTTCAGAGACCTAAAACTGCAATACTCGATCAT
CAATGAATTAGTTTTCTTGCTCTTAACCATCGATGAATTAGcatcagttt
tactcaaaagctttttttacaGTTCCAACTTCCCGTAcggctttttttct
tctttttaaatttgaggCAGGATTGCTCCTAATGTTTTGTGTTTAAAGAA
TAGTGGTCTGGAAATCGAGACTATCGATGAACCCGAATGAGACCTTAAAT
GCCATGCCAAGCTTATAAACACTAAATGACTAAATGCTTCCAAAAATTTG
TTACGCAGTGCACTCAGAACTGCTCAGAAAGATATTACATATTACCCATG
CATAATTCGACAAACCATTTTCCCATATTTTTATAGACTCAGCCAAAAAC
AATCTTTTACCAAATGGGAAGTTCGACGCCACCTTCACTCAGACTGGGAT
CGAACTGCGATGGACATGTCAAGGAGAACAGGCTAATTTTTCACCAATGC
TTCGAACTGTGATGTCATCTGTATCCAAACCCTATGCTGGACTTTGTACC
CAAAGAACAAGCNATGATGTCATCTGTATCCAAACCATACGCTGGACTTT
GTACCCAAAGAACAAGCTTCTTGCAAGGCCCCAGTATCGATATACGTAGG
TTTTGGTATTTACCAATCTGATTCTAATTGTGTAAGATTTATGGTATCTA
CTATTGATACTACGAAGGCTAAGATAGCTAGCTGCAAAATACTAATATCG
GAATACTTATTTTGTCCGTGTGGTGTTTTATGAAGAGGACCCTATTTTTT
TCTACCCTAAAAAGTTGTCAATTCTCGGTAATGTTTTCCTAATGCCCTCG
CAGTGCTTTTTTCTGTTAATTTGTCACTCTATTATAGAGGTAGCTGTGAC
AAATTTTAGCTTGTTTGGATTTTTGTCAAGGTTTCAGTAAATTTTCAACT
AATCCTGCCATCCATACATAATTACTATCCAGAATTGGATacatataccg
ggtgcaccaaaaaaaagtatacaactttgtcgagatattgtgagcttcag
gatttaaattttttgttcattctttttttattgtatagaggatgcttcaa
cttgaattttgagctatcatacattaaatttgaaaaagtagttcgaaagt
tatttccaaaaaactgactgtttttccatgtcgaaatttcaaaaaatcat
taaaaacagcaatcacgctataaataagacaaaatgacaaaaacacattt
tcattgtttttttttattcctttttctcttatcttatattttgccaacag
tttgtccatcttatttgcacgtcatgCTGCGTcctgaacatttccaacac
cagcaaactcaatgcagacccaagttttTTGAGCAACTATtcgaggaatg
gtgatctattttttttcaaaaattttctcacacagcacacacataacatc
aaaacatcTCTTGAAGATTTCCAAAAAGAACTTTCaacctttccaaaaat
attatcccacgtgggaatagcttgttttaccatattcttaaattccgcaa
cgagttttgatgaacacaattgcattttttggtattttaatgTGTAAAAa
aggtaagtgtcaagagaaaagtttgctcgctgtttttaatgattttttga
aatttcgacatggaaaaacagtcagttttttggaaataactttcgaacta
ctttttcaaatttaatgtatgatagctcaaaattcaagttgaagcatcct
ctatacaataaaaaaagaatgaacaaaaaatttaaatcctgaagctcaca
atatctcgacaaagttgtatacttttttttggtgcacccggtatatctGT
TACTATTTCGTTGCTTTGAACTTGAAGACTTGATTGCTTACATTAtcaag
tttttttctttcattcaaGCTAAATTATTACAGCATCTTTTGATAATCTT
ATACACAAAGCCACTTGCACAAACGTGACTCAATCCTGTCGTAAGCGCTC
TCAAAGCGAGTTAAAGGACTGGGTTCGAATTTAActtattgaatttttat
gtgtGTTTTATATACAGGCAACCTGGTAGTGAGAGATGGTTTGTATCGTG
TCCAAGGATGGACCATGTTGACCAAGGGAACAACAAAAGAACAATATGAT
TCCATCGAACTCTGGTTAAGGTGGAAAGTCAAAGGAGCCGAAGAAGATAG
CAAGCTGCTTGGTGTGAGAGGCAAATTCTTAAAAAGTATGGGAAATTGTT
AAATGAATGAACACAAACTACTATACAAGTCTTTACCGatctaaaaaaat
tgtttcactGAAAATGAAGGTCCTTAAAGAGGttaaattttcgcgaggat
tttTTTTGAGTAGacgaaatttctttcattttcctattttcaaaagtctg
ggttttaattttctcacaaaactcaattttttggaCGCATATATACGTGT
CCCTCGTGGTCTAAGGGCTAAAACGTAATTTTTGTACTTCACAGATGATG
ATTGGGTGTTCTGGAAAACGCAATTCCATCTTCTCGATTCACCGCTACCT
TTTGATTACGTCATACTCTGCTTCAAAGGACCACCGGCTCATATGGATAT
cttgattgatgacgtcacgtTAGTACCCATACCTAAGCTTGCGGATTGGC
GGGAATATTCTAACGACCGAATTGATGATATCAGGAAAAGAGATGTTGTT
CTCAGGTATTATGATCAAATATTTGCAGAGAGATGTCAGCATACAATAAC
AGTGCAGTCTAAATGTGCCAAAAGTCATCAACATTGTGCACAAAGGCGTA
CAAGCATGAGACTTTGCACAATTATAGTTTAGGggtaaaaatggatttaa
acctcaaacccaaaaaattggcacctgtttgtgtattttacagaccagaa
atgaatgaattttttttctccaaagtatgtcatgttacataccgTTGGAA
ATTCGATAATACACCTTTCAGGTACTAGATACGATTAGTTAGATCAGATA
CAAGCTTATTTTACAGTAGCTTTTTGAGTATGGTTAGGGTGGGAAATTTT
GCCTTAGAAGTGCTTATCATGGGCATGCCCGATGCAACCCATATAGCCTA
AAGCTTTCGAAGTTTCATAAAAACGCGATATTCAATGTCAAGTAAGTCTA
ACTCTCAACCAACGCTATCCATTTAGACATCGAAAGGTCCTCTATctaat
ttgaaagaaataaaaattttcgctgacgtcagcaattGCAATTTATtggt
ttcattttcagatataggttgtaaTGTTACCCCTAAACTACAATTGTGCA
AAGTCTCGTGCTTGTACGCCTTTAGTGCACAATTTTTACATAATTAGACC
GTACTACTCCCTATGGGAAGACTGTTACATTTATATTCCCTCCTGATACT
AAATGTAGTTAAAATCCTCTCTCTCAGTGATTTTTGCCTTGAGAATCTTT
TAGCCGCTAAGTAAGAATAGAAATCAAGGATGAGAATGGGATGGTGGAGC
TCAAAAAGCGATGGGCATATTTAGATTCCAAGTTATTTTAAATTCCCTTA
CATCTCTTGTGTTGACTACTGTTTCACTACCATCAGGCTTCTTTATCAAT
ATAGAGTGAAGTTTGATCCAGAGGAATACCATGCGATGGATCTGATTACT
ACCACCACATTAcaggtacatgttttttataagcaagtatctacccctat
atcaggctcgcattatgattagcattctattgttggacctaccccggtgg
ggtgaaggtcctataaattaacccgtgttcgttagttagttagttcgttc
gttcgttcgttcgttcgttagttNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtccaatag
atatataaatcgaaatttaaaattatacattacttccattaaattctaat
tattcgttttataaataggtaggtccattaaagtattgctTGTTCTTAAa
taatagagccattgtttaagtaccaaaaaaaaatctaatttttcccGACA
TCTTTTCGACTACGGGTTAGTAGTAAGACtgcagttgactctctctaatt
cgatcttcgatGGACCAAGAATTGTCTTTGAACTAgataaagattcgaat
tacaaagagtTATTCAAACCACTTTCCATAGCTGAGGGGGGCTAATATTT
TATTTCGAATTattgaaagattcgaaaaacggaatatcgaattagagaga
gttgactgagatttcatttttatcatagtgattataaaaaacactggtct
ggaaggcttttttgtctctttttattgttaaaagatggagcttacgtacc
aaaatcgatttattttgcaaactttttgatcatgtgattagaaaatagac
caatcccaagagtaGATTTTGGTAACGTGATCAAAAAGTATGCAAATCGC
AACTTGTCATTTGTTTGtaacaaaggaaaattgaacaaaaagctaaaaca
atacttTACCAGACCggtattttttataatgaatatGTTTCTATGAAATG
ACTAATGACTAAAAGAACTTTCACTAGGTAAAACAGACTTCCAGCGATTT
TGGATGGGGCGGTTCAGTTCATTTCGAAGCCATCGAAAACAATCCAATTT
ACCgcaattttattgaaaggacTTTCGAATGGGCGACCATGGAACACCGC
TTGAAATGGCCCTTTATCGAAACCCTCCAGGTTGGgcttgttttttcttc
tttctataCATCTGATgatactgaggttaagcattcCAGGATAATCACGA
AGACGGACGAAAGATttaataggctagtgaaaatacgaaatttgattgat
agaaactcactagcctgttaaatcttcgttcgtcgtcgtgcaAAGTTGTA
GGTGCATCCgttaattacacgttttttgtttttttttaagaaacacactt
ttaagaaacatgaggctcaaaatgcctaaaaactaagaaacatctaagaa
acatgctgaggctgagaatgagaaaataacattttttaaatttttttttt
taataaccttccaatccagccttccatgaggctgattatgttaaaaagtt
tagaaacatgtaagaaacatttaaggctcaaaaggccgatttcttAAGAA
ACATTGAGGCTGCTTGGTAAAACTAGTTTCTTAAAAAAAAAACGTGTATG
TCACATgcgcgttttttataagaacatccaaaatttttgaagccttcgga
tgttcttagctttttgagttttatacCTAAAAatgaacatgttcttattt
tgacaatcttgtaaatatttttgaccgttttcctaagaaataggatGTTT
TTtaagtccacaaagccttaaaatgctcttaacttgttcttaacattttg
gccagaaTCTATGAAAGCCTAAttcaagtctgaaaatcaaGGAAAAATCG
AATCATACCAGttaataaaaaaacataaatttaacTTATCAAAGGGTATC
CTGTCGTATTTTTTTGGGAAagtaatcatttttcaaaattccatttacgC
ACCACGTACACAATATCACcatgttttcaattttccttgAATACTTCTGA
TGCTTTTAGGTTCGTTTAAATATAAGATTCATGGTAAATTTGTGttggat
attttctttttgtaaggAAGGGTGTTGAGGATTATTCGAAAACAGATGCC
ATGCTGCACACACTGCAAGATGGAATGAAGTAAGTCACGTGGTTTGAGCT
CATTTATTTGTTTGGGTCATTCCTTAAATGATTTCTTCCTTCCCAAACTT
GGTGCCGGATTCATGGTATACATGACGTAATGGTTAATAatgtttgacag
ccttcttcaacttgacataaccttgtttccatttaatcccaaaacattgt
gtagaatacttctttatggcgacCCCGATNTTAATGGCGAACACCCGGTC
TTATTTGAGTGATTTTTGAATATCAAACATTACGATTTCACGATTTCAAG
CGATGTTTTAGTCGTTTTATGGAAATGAAGCTAACTAAACAAGGTCATCC
GTTATGGATCAACAGATGTCAAAATTTATTGAACGCACATGATACTAAAT
TGACTAAGTGCTTGTAAGTTGACTTACAAACAATAAGTATAATTAGTTTA
AACATGGCACCAACAAGCCATGGTAATAGTTGGTTTTGGAATATCGTGAA
AGGCTTGACATCGTGAAATTCACAACGTAAAGTTGGACACAGAAGCACTC
AAAAAGACCGTTAGTTTGCCACTAACATTGAAGTGGGAAACGCCGAAAAA
GTTCATTTTAAATGATTTGATCATTAGATATTAAAGATCAGTCTTTATCA
ATGTAGTGTCTTCCCTTTTTCGACTATTAAAGAATTTCCAAATGTCAGTC
TTTATCCAACTTCCCGCTTTCGATGAtaaaaagaatttcatttttatcct
TTAGGATGAAGATAAGAGGTCATTGTATTTTTTGGGCGGTTGAAGAAGAA
CAACCAAAATGGTTATTGAAAGCGGATCCTATGCAATTGAAGGGCGCTAT
GTGGAGAAGGCTTCATGATGTGTTGACCAGATACAAGAATAGGTGAAATG
GCAGCCCCGAACCTAGTCCCCTAGTTCGCTTTTTTATGATACTTATCATA
GGCGAAGGGAGATATCCTGCAAAGTTTATGAGGGAGTGTAGACTTTTAGG
ACATTTTCATCATCTtttgataaataaaataattacagtgtcgtaaaaag
tGCTATcacccataaattttgcagggtatttTGCAAATCTCCATACGCCT
ATGCTTATAGAGCTCCCGAGCTGGTagacaacgttgtttcaacgttcaac
tAACTTTATATAGACGTTATGAACAtaagataaacgttgaaacaacgttg
tgtgccagctgggtcacGAAAGGATCGAGTTACGATCGTATCACATCcgt
tattaaaatcaaaaagtggtgcaagtCGTTTTGAAGCACCTTTCTTCAAG
TCTCTATGTAGATCAGTTTATGTGGTGAATAAACACTATTGGTAACAATT
GGACGGGGATGGCATGAGCTATTAAGGCGAGGACCTAAATATAGACGTCG
ATAAGCCGTCATCCCAATGATTATCATACCATTACTTTTTCATCAAACTC
TGAATtactagcgagtttatgtatgtgtttttctgcgatgAAGATGGTTC
AGCTTCTGAGTTGCCTAGTTCCTGAATGACTGAGCACGACGGTAAATAAG
TGTTTCTTTCACCAGATTCTGTGGATCAAAAATGCGGGTTGTTCCAAATC
GCTTTAGTCACTTCACTTCAGATAAACTCGCTAGTAAAAAGACGCCGTCG
TCACAGGCTATCCATTTGTGAATGTTTGGAACCtgttagctctagtttag
acggtcgACTTTCCGCCCTGCCTATTCATCAAATTATTTGAGTAGGCGAA
AAGTGGGCGCAAAGTTGGCAgataaaatctttgcttgaaaaagatcgTAA
GAAGCCATTGCATTAACGTCAAAAGAAGACAtcgcattgactttagacag
ccaaccTTTTGCCAACTTTTATTAACAATTAGAATGGACAGGGGAGAAAG
TGGGCCGTCTATACTAGAGCTAAGACGTGTTGATATTGCaagcagtggcg
tggtgggaaaattttgagtttttgaggtgatgagggcgccatttttgttt
tttcatttgtcaatctttcgatatgggcgcctgaaaaatccttcttggcg
tcccttatttttgggcgccccttctcaaaagggctccgctggggggcctg
gcccccctggcccccctgccaccacgccactgatTGCAAGTTTAACTACA
CATTTATGATTGTGTCTTTTTCATTCTGTTGACAGAATAAGAGATTGGGA
TGTGAACAATGAGATGTTACATGGTTCGTTTTACAGCGATCGCATGAATG
AAACGATAAGAGATTGGATGTATTACGAAGCACACCGCATTTTCCCTCGA
GGACAAATGTTCGTTAATGAGTTTGAAGTTCTGTCAGCACCTTGGTATAC
ACAGGTTCGTAAGTTCGATTGTTCGTTATCATATGGATATAGAAATGAGG
CACGTCTCTATGCTGGCAAAGCAGAACAAGAAAAAGAATATCTCAAAATT
TGTGCCTGGAGAaagttattttcttttgtttggaaatGTTGTGTAATAAA
TTGTAGGAGATACACTAAATGGTGTCCTTATAATGTTGGAGGAGAgtttg
ataattttgaaaacgTATATCTTCACGGTCAgtgtagactagtaaaccac
gttcACTGTCTTTCCAacccactctcccgcggcaattttttattttctat
aagaactctttataagCATGATTGGAATAAGTAGAAGCTCCGTTAAATGT
TTAGTAAAACGAAGAGGGTACAAACAATTTAAACGAATGAAAACGCCTCG
TATGAGTGAAGTCACACGCCAGCAAAGAACGGAACGTTCTGGGAGACTTG
CAGATCGATTTGAACGGaatccaaaaattgaaaagtgcgcttttcaagat
aaaaaagatttttcaccaGAGGTCCCTCTGAATCATCAAAATGATCGTGT
TTATTTCAAGGGAGGAAAGAAGGACGTTCTTTTAGAAAATCTCTGTCATC
ATACAAACCGTCAATCAAAGAAGGTTATGGTTTCCGCGTGTTTGACATGG
AATGGTGCCACCCAACCATTTTTTGTTAACGAAAGTGGTATGAAGGTCAA
TGCAGTCAATTACAAAAATCATCTTGAAAAGAAACTCATCCCTTCTGTTG
AGAAGCTCTTTACCCATGAACAGTGGATCTTTTTACAAGatgtagacagg
agacccgtcgtgtgtttttttataatttgatgtacacaaaacgggtgtcc
tcacttactaaaataaaaaccaaatttcgaaagttgcgctttctctaaga
aaNATTTTTATAAGATGGTGCTCCATCGTATGGTTCCAATTTGGTGCAAG
ATTTCATGGATGAAAGACTGCGGAAGCGTTTTGTGAAAAAGACTGACTGG
CCACCCTCTTCGCCTGACTGCAATCCATTAGATTTTTATTTCTGGGACGC
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNACCCTTTTAAAGATGAGAATGAGTTGAAAAGAAAGATACGTAC
GGTATGGAAGAAAGTCGGTTCAAATCGCGAGATAATCAGAAAGGCTCTAA
AAGAGTTCCTACCACGAGTGAGAACTGTCAATGAACAGAAAGGTGGTTGT
ATCAAATCATTTTATAGTTAGACATTAATATTGATTGGGAAACCGTGGAA
GAATCTGTTGCAAAGAAATAGTCTTATAACTTAaactttatcgatatttt
ttaatgatttgtaCGAACCATTGAGTTCACGAACAAGAAAAAATTCTAAT
TGACGTCAGTTTTGAACAAGTCAATTTTGAcctcttttttagaaaactcc
ATAACTTTACAAAATATTAGTTTCTgacaatgaaattttcaggagtgcCT
CGATTTAAGTTGAAGTTTAGCCATACGAAATTTTAAGTTGATAGAGCGCt
ctacgtcaaaatttgaaacttatggaagttttttttggaccacccggtat
tcccgcgttcctgtgtccaacgaaagacagacgcttgctagtctacgGTT
AGTGTTGCTAATATGGgtatgaatttgaaaatgacCTGGATTGGCCGaga
atatttttctattttcttaccTAATTCCTTTCACTTTAGAGTTACGTGGA
TCAAATTCGAAGCTTCTTAAAGAAAGGGATACCGATAGATGGAATCGGTG
TTCAAGGACATTTTGCTGGTCATGCACATCCAGAGATACTCAAGGTATAA
CTCTTCCATTCCTCTTGCTGAATGCATTTCCCTTTGTCTTTTTACGGTTT
GTTAAGGACAGATTCGCTTACATGGTATACATCTTTAAAGCCTGTTCGTA
ACTTTGTGagttgttcttaagattttctcgttttcatcattttgtgagta
tgTTTCTGAGCGATTTGCTAAgtaattgggtgttttagagtccgtgaGGC
CTTAAGTCTTCTTAGCTTATTCTTAATAATTTGGTTTTGgaagccttatt
ttcttatatagtttgttcttataaaaaatgtgtttaCTATGAGGTGACGC
TAAGATATTTTGACAAGCATTTAATTACTAGCTTCCTCTGAGTTATGTTT
TGTTAATTTCGGTTGTAGGAAAGATTAGATGACCTTGCAGTATTGGGATT
ACCTATTTGGATTACGGAACTTGATGTTGTTGCTGAGAATGACGTCAAAC
GGGCCGAAGTTCTCGAAAAAATCATCCGCGTAGCGTACGCGCATCCATCG
GTACAAGGGATTGTTTTATGGACATTTTGGGATAAACATGAATGGAAGAA
AAACACGTCACTGTTTGAAGGTCATTTTTTTAAGGTAAGCTGGTACTTTA
TGTGGGGTTGATAgcgtttcttaattttttgatcaGTTACAGGTGGAATT
TGtgtgaaatttattttgataagaTGAATGATGTACACCTCGGtcttact
ttcgttttctttacAATCAAAGCGGGTAAGTATTGACTTGAAGAAACTTT
AACTCTTTAACTCCCCGAGATACGAGTACATGCGTCCAAAAGTCAGTACT
AACTCAAGTACTGAATTGATTAATTTTTAGAAGCAGAAACCGAAGGCttt
tagaaagaaaaagaaaatagctCTCAGCTCAACTTTCAGATTACaagctt
ttttgaaatttcgataatgggaattttaaaaatataacaACAACAACTTT
CTCAAAGAATACATGCGCAAATAAGGTTAAAAGTAccttttttactactt
ttacaGCCAAATGAAGCTGGAAGAAGATACTTGAGAATGCGTAATGAATG
GAAGACTGACATAATTGACCGTCAACCAGATGACGTCACGTCACATGATT
GCGTGTTTCGGTTCCGTGCATTTCATGGTGAACACGTGATCAGAATTCGA
TTACCCGATGGTAGTGTCTTGGAACAAAACGTGAATATTCGAAACCATCC
AGGTGAATTGGAACTTGTGTTTAACAAACAATCACCAGATATAAAAGATG
CACCTGATTGAAGTGAATTCGAATGGTATATGACTGGATATTGGTGCACG
AAATGTATCACCATGTAACCAAAATGGTGTTTGCTTCTATGGTGAAATAC
TATCACAAGGAAGTGCTAGCCAACAACTATAAACTTATTATAGAGGCTTT
TTATGCTTTGTTAAATTACGTAATTTCCATAATTATGGaaacaaacgttc
gatttgtgtAAGGGATCCcttctacagattcgaacgtttgcttccataat
ggtggaaatcaGGTAGCTTAACAAACttaataaaacatgaaaaacttaTA
CCGCCTGTAATACAGGTTGTTGAGGACCTTGTATGGCAAACATGAAAAAT
AGGAAAACGTTTAGTGGTACGTAAGAGAAAGAAGTCCATTTGAGAACCGT
TTCAGAACAGGCGATCTGATAAAAGATATCGAACATTGCTTTGTAGATTG
GTTCTGAAATTATATATTAAAAAagaatctttagaaaaatataagaaatt
atCTATCTGTGTCCTACTAACTATATACATTTgtcgtgaaaaaaaaattt
aagtatAAGGTAACTGAAACATAATGAAAAAGTAATTTCGAAAATCATAA
ATGGACTTCGTCACCTTTGAAAGACGGGTTGAAGTAGCTAATCTTGATGT
CTGTGACTCGAGTATCTTCCTTAAAGACGTCATCGTTAGTTTTAGAGTGA
TTTCCAGTTTCCCCGATTTGACCATCTGGGTTATCTTCGGATTCGGATTT
GGGTTTGTTATCGAGGTGGGATGGGATTTTGAATGCGATGATGGAATTGA
CAAACATTGAGACGATGGCAATTACGAAAAATGGAAAGAAATTATTGAAA
GGAAACCCCAGAGGGTTGGAGTTTCCTTTGATGCCCTTGACATTGGTCAA
TGACCAGGATTGAAGCGAACCAACAATAGNCTccccaaattttctaaaaa
taggcaccctacgagggactgatttttctattttagtgtttttgcgaccc
tacctgggactcgtggaggttaaaaaaggtaccctgacc

Coding sequence (CDS) from alignment at sc0000028:843978..857466+

>TCONS_00003465 ID=TCONS_00003465|Name=TCONS_00003465|organism=Clytia hemisphaerica|type=CDS|length=1647bp|location=Sequence derived from alignment at sc0000028:843978..857466+ (Clytia hemisphaerica)
ATGCTGGACTTTGTACCCAAAGAACAAGCNATGATGTCATCTGTATCCAA
ACCATACGCTGGACTTTGTACCCAAAGAACAAGCTTCTTGCAAGGCCCCA
GTATCGATATACGCAACCTGGTAGTGAGAGATGGTTTGTATCGTGTCCAA
GGATGGACCATGTTGACCAAGGGAACAACAAAAGAACAATATGATTCCAT
CGAACTCTGGTTAAGGTGGAAAGTCAAAGGAGCCGAAGAAGATAGCAAGC
TGCTTGGTGTGAGAGGCAAATTCTTAAAAAATGATGATTGGGTGTTCTGG
AAAACGCAATTCCATCTTCTCGATTCACCGCTACCTTTTGATTACGTCAT
ACTCTGCTTCAAAGGACCACCGGCTCATATGGATATcttgattgatgacg
tcacgtTAGTACCCATACCTAAGCTTGCGGATTGGCGGGAATATTCTAAC
GACCGAATTGATGATATCAGGAAAAGAGATGTTGTTCTCAGAGTGAAGTT
TGATCCAGAGGAATACCATGCGATGGATCTGATTACTACCACCACATTAc
agGTAAAACAGACTTCCAGCGATTTTGGATGGGGCGGTTCAGTTCATTTC
GAAGCCATCGAAAACAATCCAATTTACCgcaattttattgaaaggacTTT
CGAATGGGCGACCATGGAACACCGCTTGAAATGGCCCTTTATCGAAACCC
TCCAGGGTGTTGAGGATTATTCGAAAACAGATGCCATGCTGCACACACTG
CAAGATGGAATGAAGATGAAGATAAGAGGTCATTGTATTTTTTGGGCGGT
TGAAGAAGAACAACCAAAATGGTTATTGAAAGCGGATCCTATGCAATTGA
AGGGCGCTATGTGGAGAAGGCTTCATGATGTGTTGACCAGATACAAGAAT
AGAATAAGAGATTGGGATGTGAACAATGAGATGTTACATGGTTCGTTTTA
CAGCGATCGCATGAATGAAACGATAAGAGATTGGATGTATTACGAAGCAC
ACCGCATTTTCCCTCGAGGACAAATGTTCGTTAATGAGTTTGAAGTTCTG
TCAGCACCTTGGTATACACAGAGTTACGTGGATCAAATTCGAAGCTTCTT
AAAGAAAGGGATACCGATAGATGGAATCGGTGTTCAAGGACATTTTGCTG
GTCATGCACATCCAGAGATACTCAAGGAAAGATTAGATGACCTTGCAGTA
TTGGGATTACCTATTTGGATTACGGAACTTGATGTTGTTGCTGAGAATGA
CGTCAAACGGGCCGAAGTTCTCGAAAAAATCATCCGCGTAGCGTACGCGC
ATCCATCGGTACAAGGGATTGTTTTATGGACATTTTGGGATAAACATGAA
TGGAAGAAAAACACGTCACTGTTTGAAGGTCATTTTTTTAAGCCAAATGA
AGCTGGAAGAAGATACTTGAGAATGCGTAATGAATGGAAGACTGACATAA
TTGACCGTCAACCAGATGACGTCACGTCACATGATTGCGTGTTTCGGTTC
CGTGCATTTCATGGTGAACACGTGATCAGAATTCGATTACCCGATGGTAG
TGTCTTGGAACAAAACGTGAATATTCGAAACCATCCAGGTGAATTGGAAC
TTGTGTTTAACAAACAATCACCAGATATAAAAGATGCACCTGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001926XLOC_001926Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003465-proteinTCONS_00003465-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003465-exon-sc0000028-1491911889:843978..844205TCONS_00003465-exon-sc0000028-1491911889:843978..844205Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1510915933:843978..844205TCONS_00003465-exon-sc0000028-1510915933:843978..844205Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1575043694:843978..844205TCONS_00003465-exon-sc0000028-1575043694:843978..844205Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1491911889:844814..845072TCONS_00003465-exon-sc0000028-1491911889:844814..845072Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1510915933:844814..845072TCONS_00003465-exon-sc0000028-1510915933:844814..845072Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1575043694:844814..845072TCONS_00003465-exon-sc0000028-1575043694:844814..845072Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1491911889:846495..846662TCONS_00003465-exon-sc0000028-1491911889:846495..846662Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1510915933:846495..846662TCONS_00003465-exon-sc0000028-1510915933:846495..846662Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1575043694:846495..846662TCONS_00003465-exon-sc0000028-1575043694:846495..846662Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1491911889:846922..847132TCONS_00003465-exon-sc0000028-1491911889:846922..847132Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1510915933:846922..847132TCONS_00003465-exon-sc0000028-1510915933:846922..847132Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1575043694:846922..847132TCONS_00003465-exon-sc0000028-1575043694:846922..847132Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1491911889:848032..848092TCONS_00003465-exon-sc0000028-1491911889:848032..848092Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1510915933:848032..848092TCONS_00003465-exon-sc0000028-1510915933:848032..848092Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1575043694:848032..848092TCONS_00003465-exon-sc0000028-1575043694:848032..848092Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1491911889:849755..849907TCONS_00003465-exon-sc0000028-1491911889:849755..849907Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1510915933:849755..849907TCONS_00003465-exon-sc0000028-1510915933:849755..849907Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1575043694:849755..849907TCONS_00003465-exon-sc0000028-1575043694:849755..849907Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1491911889:850848..850906TCONS_00003465-exon-sc0000028-1491911889:850848..850906Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1510915933:850848..850906TCONS_00003465-exon-sc0000028-1510915933:850848..850906Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1575043694:850848..850906TCONS_00003465-exon-sc0000028-1575043694:850848..850906Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1491911889:851632..851769TCONS_00003465-exon-sc0000028-1491911889:851632..851769Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1510915933:851632..851769TCONS_00003465-exon-sc0000028-1510915933:851632..851769Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1575043694:851632..851769TCONS_00003465-exon-sc0000028-1575043694:851632..851769Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1491911889:853063..853231TCONS_00003465-exon-sc0000028-1491911889:853063..853231Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1510915933:853063..853231TCONS_00003465-exon-sc0000028-1510915933:853063..853231Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1575043694:853063..853231TCONS_00003465-exon-sc0000028-1575043694:853063..853231Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1491911889:855067..855171TCONS_00003465-exon-sc0000028-1491911889:855067..855171Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1510915933:855067..855171TCONS_00003465-exon-sc0000028-1510915933:855067..855171Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1575043694:855067..855171TCONS_00003465-exon-sc0000028-1575043694:855067..855171Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1491911889:855546..855761TCONS_00003465-exon-sc0000028-1491911889:855546..855761Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1510915933:855546..855761TCONS_00003465-exon-sc0000028-1510915933:855546..855761Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1575043694:855546..855761TCONS_00003465-exon-sc0000028-1575043694:855546..855761Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1491911889:856184..857466TCONS_00003465-exon-sc0000028-1491911889:856184..857466Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1510915933:856184..857466TCONS_00003465-exon-sc0000028-1510915933:856184..857466Clytia hemisphaericaexon
TCONS_00003465-exon-sc0000028-1575043694:856184..857466TCONS_00003465-exon-sc0000028-1575043694:856184..857466Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:843978..857466 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.240698	0	0	0.00053823	0.000286646	2.2443	2.0261	1.62928	0.916647	1.44772	1.47187	3.3033	2.95212	1.54339	3.41493	2.57103	3.47363	0	0	1.8257	1.6796	1.23089	0.739854	3.58759	4.80112	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001000GH10
IPR008979Galactose-bd-like
IPR031158GH10_AS
IPR017853Glycoside_hydrolase_SF
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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