TCONS_00003584 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003584
Unique Name	TCONS_00003584
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	930

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000030:908990..911689+
coding sequence from alignment at sc0000030:908990..911689+

transcript sequence

>TCONS_00003584 ID=TCONS_00003584|Name=TCONS_00003584|organism=Clytia hemisphaerica|type=transcript|length=930bp
CGCATTCCGAAGACAAACAAATAACAAACACCAACTTTTCATCTTCGGTA
ACAGTAAAGGTCAAGCCATGTACGTCATACGAGCTGGAGATACGGAAGGC
TAAAGCTTTGATGACTCTGGATGAACATTTTTTCACTGTCATTTTAccag
attttgataaaaagactTATTCGTTAAAGaaaaaagaatatgtggTTATC
CGCCGAAAATTAGTAATTCAAGAGGACAGCTTATCTTGGTTGTATGGTTG
CTCGTGTGACCCATTTAAACAAATCTACATCGATGGCCTTTCATTTGATA
GCGATTATGTCCAGAAAGATCAAGATTTATGCATCCATCAAACCGTTGCA
AAGATTCTAATTCCCGAACTTGACGGGTGGACCGAAGATGAAGACCCTTT
TGaAACATTTGAAATCCATACACTGAAATCCAAAACGGAGACTGATGTAT
ACGATATCGCTTTCGCCAATAAAAACACAGTTCTTGTGGTGTTCGAGGGG
GATGTTGGGGTCGTGACGTTTAATGGAACGCGGTTTTACTGCAACATGTG
TCACAAAAACCATTGTATCCATACAACGTACCTGAAGAAAAGACAAAAGG
AAGATGAGCCACCTGAATTTTTGGATGATTATTTCAAGATCAAGCCATCC
ACTGAACACACGAAAACCAAAGACGCAGTCTCTAAGAAGCAGATTCAATT
TGATGTCCCTCCCCACATGAAACATACTACTCAATCCCCGAATGTGTATT
TGCCAAAATTTGGAGAACTCTTTCTTTGTACTGACGACGATGAGTTATGC
CGTGCAGATTGTGGTGGTGCTTTGATGACATTAAGCAGTTTTTACGACGT
TCCGCTTTATTGCAAAGGATATTCGATTATGTGCAGAGTGAAGACAAAAG
AATGCGAACTGTGCCACAAAGTTTGGGATT

Run BLAST on NCBI

protein sequence of TCONS_00003584-protein

>TCONS_00003584-protein ID=TCONS_00003584-protein|Name=TCONS_00003584-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
HSEDKQITNTNFSSSVTVKVKPCTSYELEIRKAKALMTLDEHFFTVILPD
FDKKTYSLKKKEYVVIRRKLVIQEDSLSWLYGCSCDPFKQIYIDGLSFDS
DYVQKDQDLCIHQTVAKILIPELDGWTEDEDPFETFEIHTLKSKTETDVY
DIAFANKNTVLVVFEGDVGVVTFNGTRFYCNMCHKNHCIHTTYLKKRQKE
DEPPEFLDDYFKIKPSTEHTKTKDAVSKKQIQFDVPPHMKHTTQSPNVYL
PKFGELFLCTDDDELCRADCGGALMTLSSFYDVPLYCKGYSIMCRVKTKE
CELCHKVWD

Run BLAST on NCBI

transcript from alignment at sc0000030:908990..911689+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003584 ID=TCONS_00003584|Name=TCONS_00003584|organism=Clytia hemisphaerica|type=transcript|length=2700bp|location=Sequence derived from alignment at sc0000030:908990..911689+ (Clytia hemisphaerica)
CGCATTCCGAAGACAAACAAATAACAAACACCAACTTTTCATCTTCGGTa
aatttggttttattttaGTACAGTTTTTTTTATTGGAACTGTTAATTTTG
GCCAGGCCTTGATGTGCTTATTTTGTTGAGAAATTAATCGCTTAATCAGA
CTGGTCATGTTCTTGTGATGCtcctattttgtttttgaatttcagcTTGT
AAATGTTCTTATAACCTGGGTtataataaagaaagaaaacttGCGGGATA
TATTTTATTCTGGTAAGTCTCTTTACAGTGGTATCCAAATCAAACtccat
ttattttcaattttccaataattttttttatctattcaGGTAACAGTAAA
GGTCAAGCCATGTACGTCATACGAGCTGGAGATACGGAAGGCTAAAGCTT
TGATGACTCTGGATGAACATTTTTTCACTGTCATTTTAccagattttgat
aaaaagactTATTCGTTAAAGGTTTTTCATAATTACTAACGCCAAATAAT
TTTAAGTTGTCACAAAAAGCTCaagaaaaattgagcaaaaataATGTCTT
GCCATTGATTaagtttattatttcaaaagattaagttgattttaaaaagt
tacGGCCGAGTAAGTATTATTAAGTAACGACCTAACTTCCTAAATTGTTA
CAGCCCTACCTCTATTTAGcaataaatgttcttatatttttaaAAGAGCT
AATATAACTGAATGATACTTTAAAGGGTTTTAATAccaaatttcattgtt
ttaagtTAAAACTGAGTAATTACTGTTTTCCTCCTTTTGTTTACGtttag
aaaaaagaatatgtggTTATCCGCCGAAAATTAGTAATTCAAGAGGACAG
CTTATCTTGGTTGTATGGTTGCTCGTGTGACCCATTTAAACAAATCTACA
TCGATGGCCTTTCATTTGATAGCGATTATGTCCAGAAAGATCAAGGTATT
TTGAAATACCAGTGCTCAAGGGTTTTGAACTTCCCGTGGAAAAACGAATT
TTCTTGTCCAAATAAACTAGAAAATAAATAATGACTCCCCTCTTTAGAAT
agaattttcttagaaaaagtCTCATGGCATCGATCTGAAATCAGCAGAGT
TGCAAAAACATCACATATTTTGATGGTGAAGTTGTAATAAACTAGTATGA
ACCGGTAGTATTAATTTAGGGGAGTTAGAATTTACTGTTACACCTTCagt
taaaaaacattttcttaaatATCTGAtgcgaaatatttttgctttccaCT
AGATTTATGCATCCATCAAACCGTTGCAAAGATTCTAATTCCCGAACTTG
ACGGGTGGACCGAAGATGAAGACCCTTTTGGTATACTTTTTTAGCTAAAG
TTTTGTTTGCTTTGTGTTTTTTACATTGTTTACAAAATGACGGACTCGTG
AGACCCTTGAAGGCTGTCCTGGGAAATTTTGCGCGCCTGAGGCGCCTTTG
CGATGACCGGAGGGCAACATTTCCACTACAGCTGAAACGAAGTCTTTCAT
TATTGTATTTTGCGAACTGTTTCCTTGCACgcttttcgaaattttgttga
atacgtcaattcaagaaaaattagatGAGAATGAAGTCATGCATTCCAGA
TAGTCGTGCAGAATTATTGCGAAAGATTAGCCGGTTAACAATATTCATTC
TTACCAATGCACGCATTAGCCATTCTAATTACAGGACACAAAGTAATTAG
ATCtttttttccctaaatttagaAACATTTGAAATCCATACACTGAAATC
CAAAACGGTAAGTAATGCGAAATGCACTGAAGATGACTTACGTAGTTTGA
AAAGAGAGTGTTGGTTTTTAAATAGAATTAAACATCAGTCGTTTGATTTT
TCTCCTGTTAATTGACAATTACTTTTAAGTAAATTAAAACTATAGGTTTT
AGGAGCTCTAGTTAAATAGATAATTGCGCTTTAAACATTTTGTTTGTAGC
CTCTTTTTAGTGATTTGGTTGGATCTTCATCATACTTTGAggtctttgaa
aaatcaagacTGTGTTTTTGTGAGCTGtgcttttttctcttttttgagaa
gataaaaaattagcCTGTATTTTATGTTGCATTATTAGGAGACTGATGTA
TACGATATCGCTTTCGCCAATAAAAACACAGTTCTTGTGGTGTTCGAGGG
GGATGTTGGGGTCGTGACGTTTAATGGAACGCGGTTTTACTGCAACATGT
GTCACAAAAACCATTGTATCCATACAACGTACCTGAAGAAAAGACAAAAG
GAAGATGAGCCACCTGAATTTTTGGATGATTATTTCAAGATCAAGCCATC
CACTGAACACACGAAAACCAAAGACGCAGTCTCTAAGAAGCAGATTCAAT
TTGATGTCCCTCCCCACATGAAACATACTACTCAATCCCCGAATGTGTAT
TTGCCAAAATTTGGAGAACTCTTTCTTTGTACTGACGACGATGAGTTATG
CCGTGCAGATTGTGGTGGTGCTTTGATGACATTAAGCAGTTTTTACGACG
TTCCGCTTTATTGCAAAGGATATTCGATTATGTGCAGAGGTAGGTTGTAT
AGTCTTTATGCACACTTTCTATAATTCTAGGTTGTATTTTATGCCACATG
CCTCatgtttctattgtttttaataaaagtagataaatatttaaaatcgt
CTTTTCAGTGAAGACAAAAGAATGCGAACTGTGCCACAAAGTTTGGGATT

Coding sequence (CDS) from alignment at sc0000030:908990..911689+

>TCONS_00003584 ID=TCONS_00003584|Name=TCONS_00003584|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at sc0000030:908990..911689+ (Clytia hemisphaerica)
CATTCCGAAGACAAACAAATAACAAACACCAACTTTTCATCTTCGGTAAC
AGTAAAGGTCAAGCCATGTACGTCATACGAGCTGGAGATACGGAAGGCTA
AAGCTTTGATGACTCTGGATGAACATTTTTTCACTGTCATTTTAccagat
tttgataaaaagactTATTCGTTAAAGaaaaaagaatatgtggTTATCCG
CCGAAAATTAGTAATTCAAGAGGACAGCTTATCTTGGTTGTATGGTTGCT
CGTGTGACCCATTTAAACAAATCTACATCGATGGCCTTTCATTTGATAGC
GATTATGTCCAGAAAGATCAAGATTTATGCATCCATCAAACCGTTGCAAA
GATTCTAATTCCCGAACTTGACGGGTGGACCGAAGATGAAGACCCTTTTG
aAACATTTGAAATCCATACACTGAAATCCAAAACGGAGACTGATGTATAC
GATATCGCTTTCGCCAATAAAAACACAGTTCTTGTGGTGTTCGAGGGGGA
TGTTGGGGTCGTGACGTTTAATGGAACGCGGTTTTACTGCAACATGTGTC
ACAAAAACCATTGTATCCATACAACGTACCTGAAGAAAAGACAAAAGGAA
GATGAGCCACCTGAATTTTTGGATGATTATTTCAAGATCAAGCCATCCAC
TGAACACACGAAAACCAAAGACGCAGTCTCTAAGAAGCAGATTCAATTTG
ATGTCCCTCCCCACATGAAACATACTACTCAATCCCCGAATGTGTATTTG
CCAAAATTTGGAGAACTCTTTCTTTGTACTGACGACGATGAGTTATGCCG
TGCAGATTGTGGTGGTGCTTTGATGACATTAAGCAGTTTTTACGACGTTC
CGCTTTATTGCAAAGGATATTCGATTATGTGCAGAGTGAAGACAAAAGAA
TGCGAACTGTGCCACAAAGTTTGGGAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002001	XLOC_002001	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00003584-protein	TCONS_00003584-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000030	supercontig	sc0000030:908990..911689 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.185529	0.093017	0.00534201	0.0545073	0.556815	0.897612	0.845161	0.6771	0.520755	0.567787	0.188508	0.696095	0.488403	0.436011	0.283705	0.842876	0.785582	0.547324	0.678837	0.519399	0.418749	0.609703	0.389473	0.397949	0	0	0.367725	0.324225	0.161217	0.400059

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00003584 vs. Swiss-Prot (Human)

BLAST of TCONS_00003584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00003584 (transcript) - C. hemisphaerica