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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003642 ID=TCONS_00003642|Name=TCONS_00003642|organism=Clytia hemisphaerica|type=transcript|length=3194bpRun BLAST on NCBI protein sequence of TCONS_00003642-protein >TCONS_00003642-protein ID=TCONS_00003642-protein|Name=TCONS_00003642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp MYTNLSDGPSQRPRKTKPSKKQLVLITLTTLTVCAAIAVAVVITLYCFKSRun BLAST on NCBI transcript from alignment at sc0000030:488754..500733- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003642 ID=TCONS_00003642|Name=TCONS_00003642|organism=Clytia hemisphaerica|type=transcript|length=11980bp|location=Sequence derived from alignment at sc0000030:488754..500733- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000030:488754..500733- >TCONS_00003642 ID=TCONS_00003642|Name=TCONS_00003642|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at sc0000030:488754..500733- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003642 vs. Swiss-Prot (Human)
Match: GGT1 (Glutathione hydrolase 1 proenzyme OS=Homo sapiens GN=GGT1 PE=1 SV=2) HSP 1 Score: 408.683 bits (1049), Expect = 2.981e-129 Identity = 214/548 (39.05%), Postives = 323/548 (58.94%), Query Frame = 2
Query: 899 LYQNGAVATDAASCSELGRDILRNG-TAVDAAVATAFCLGLYSMHSTGIGGGGLMMVYQKSSKTMESFDYRETAPGRSTVDMFKKDPSKSSTGGLSIGIPGEVKGLHEVWRKYGKTPWEKLIQPTIDLAENGFHMTLRMYEAAESMRHRLKKDDGFKNLLFENGAVLELGSTIIDKALATTLRKIAAD-PNDFYNGSLAESIVQDIQAKGGIVTLDDFANYKV-VNRKIMETDLGDYTMHAMPSPTGGPIVSFIMNVIKGYGFSSEDLSSTPKEIKTYHRMLEAMKFAFAEKTREGDPDFQDKMDVQKWEENMTSSYFGNQIRGRITDDTTHNISYYGVNVEPPTDHGTTHVSIYAPNGDAVSYTSSVNDWYGAAFRSTKTGIVYNNGMDDFNTPGIYTRFGYPPAETNFIKPNKRAVSAMTPVIITDKEGNVKLVIGASGGPKIITATAQGIIFKLLCNDELGQSIIRPRLHHHLIPNQVGGEIKRSPSADVLKGLEKLGHEIKLIDMPEHSAIQAVYVENIHKIY-------AKSDPRKYGHSAGF 2512
+Y AVA DA CS++GRD LR+G +AVDAA+A C+GL + HS GIGGG + +Y +++ E + RE AP + MF +S GGLS+ +PGE++G +++G+ PW +L QP+I LA GF + + A E+ R +++ + + VL G + LA T +A + FYNGSL IV+DIQA GGIVT +D NY+ + + LGD ++ +P GP+++ I+N++KGY FS E + S ++ TYHR++EA +FA+A++T GDP F D +V + NMTS +F Q+R +I+DDTTH ISYY P D GT H+S+ A +G AVS TS++N ++G+ RS +GI++NN MDDF++P I FG PP+ NFI+P K+ +S+M P I+ ++G V++V+GA+GG +I TATA II+ L ++ +++ PRLH+ L+PN ++R+ V LE H H+ I + ++ + I A SD RK G AG+
Sbjct: 37 VYTRAAVAADAKQCSKIGRDALRDGGSAVDAAIAALLCVGLMNAHSMGIGGGLFLTIYNSTTRKAEVINAREVAPRLAFATMFNSS-EQSQKGGLSVAVPGEIRGYELAHQRHGRLPWARLFQPSIQLARQGFPVGKGLAAALENKRTVIEQQPVLCEVFCRDRKVLREGERLTLPQLADTYETLAIEGAQAFYNGSLTAQIVKDIQAAGGIVTAEDLNNYRAELIEHPLNISLGDVVLYMPSAPLSGPVLALILNILKGYNFSRESVESPEQKGLTYHRIVEAFRFAYAKRTLLGDPKFVDVTEVVR---NMTSEFFAAQLRAQISDDTTHPISYYKPEFYTPDDGGTAHLSVVAEDGSAVSATSTINLYFGSKVRSPVSGILFNNEMDDFSSPSITNEFGVPPSPANFIQPGKQPLSSMCPTIMVGQDGQVRMVVGAAGGTQITTATALAIIYNLWFGYDVKRAVEEPRLHNQLLPNVT--TVERNIDQAVTAALETRHH---------HTQIASTFIAVVQAIVRTAGGWAAASDSRKGGEPAGY 569 The following BLAST results are available for this feature:
BLAST of TCONS_00003642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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