TCONS_00003946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003946
Unique NameTCONS_00003946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003946 ID=TCONS_00003946|Name=TCONS_00003946|organism=Clytia hemisphaerica|type=transcript|length=3411bp
ccaagccatgtaCTCGTTCGTTTTACTGCgttttatggaaattttgtACA
GATTACAGTAAATACATggtttgtcagatagtcccaagttagagcagttg
aggGTACAGGATATTACAATTTCCCCATATCTCGCTCTCACGCAATTgac
atattttcaattaaattcaGTTTAGATGCAATTTTCTGAGAACATCACTG
AGAAACGATGTATTTTTTTGACTGTTTGCTACAAGCTCACACGTTTCCTT
TCTCGTCATTTAGATTGAATCATActagaaaattattaaagttaACAATG
AATGACTCACACATTGGAAAACTGTTTTTCCAAACAGCTGGAGCTCACGT
TTTGTCTGGCTTCTTCGCTTGGGCAGCAATTCTCATCACAGGACACCAAA
TTGCTCTTCACACCAGGCACTATACCAACCCTGATCAACAAAAATACATT
GTTCGAGTGTTGCTGATTGTACCTTTCTATGCTCTGGATTCATGGCTCAG
CATGTTGTTCTTTGAAAAGAATTATTACATCTATTTTGATACTATTCGCG
ACTGTTACGAAGCATTTGTCATCTACAATTTCTTATGTTTATGTTATGAA
TATCTTGGAGGTGAAATGGCCATTTTATCTGAAATACGTGGAAAGGTCTT
GAAGACAAGCTACTTTACTTGCACGTGTTGTTTCTCTGGGCGACAAATAA
ACATTGCATTTCTCAGAGCATGTAAAAAGgcCACACTGCAGTTTTGTTTC
ACCAAACCCATAATGGCTGCCATAACATTGGTTTTAGTTGCTACAAGGAA
TTATTCAGATGGCGATTTCAGaccaGACAAAGGATATCTCTACATCACAA
TCATATACAATATTTCTTACACCATCGCATTATACGGTCTCTTCTTGTTT
TACAACGCGACCAAAGATTTGTTGACACCTTATTATCCCGTGCTCAAATT
CTTAACGGTCAAATTCATTGTCTTCATGTCCTTCTGGCAAGGTTTTGTGT
TGGCGATCATTGAGAAATGCGGTATGATTACTACCTATCATGAAATCGAG
GCTGGAACAATCTCTGCCGGTTATCAAAACTTCATTCTGTGTATAGAGAT
GTTTTTCGCTGCCGTCATGCTACGATTCGCTTTTCCTTACCAAGTGTACC
GTGTACAGAATCACAGGCTAATTGACCGTGatagtttgaaagaaatttcg
tCCAATTTACGACGTAGTATTAATCCCAAAGACATTTTACAAGACACTAT
TCATAATTTCGCTCCTGCCTACCAACAATACGCGGGTGTAAATAAAGCGA
AAGACGTTCAAGTAACCATCGCGGATGACGGTCGAGAAACGGTCAGTTAT
CAGGTAACAATACCGCACTCCGCCCGTGACGATTATGATAGCGATTCTGC
TAGTGGGGGAGAGCGAGTTTCCATTGGCAACAAGGGTGTTTTTAAACAAC
AGAACGACCGTTTTCGAACGATTGATGGACACTCTCCTTCGCTTTTGTTG
GATACGGATGATGATAAAGTGAACTTGTTAGGTTGAGCATGGATTGGAAG
AATCGTTTTGGAgataaaatttcactttttgcaGTTTTCACGAATACAAG
AACCACTTCAAGACGATGCCACTTTGTCATTATACTTTGCTTCTTCAAAC
TCTCGACTCTTTTTGAAGACCAATTTATAGTACCTGAAGGAAACTTTTTT
TGGCGAGAATTATTTTAGGCGaattggcgaattttggcaaaatttaccAA
AACTCGTTCTCGCTAAAAAAAATGTCATGATTTTCTAAAGAAACCCCCAA
TTTTAGTTCAAAACacccatttttaggcaaaaaagaaatcaatttaCCCT
GCCATAATCGCCGAATTTAGTTTTTGTCAATAGTATCTTCCTTAAGATAA
TTTGGAGTCGTTGATAAGTTAAAAGGCATTTACTTCACCGATGAAGTTTC
CTCCTGATTGTACTGTTGGTGTCAAAATATGAACAAAAGCTCCGGCAAAT
TGTATCCAAGAAAGCTGGTATAACaacatgaaaaatgaaaataatacgAG
TTCTTTGAAATGTTATTGGGAATTCAATTTCGATTTGTCACAAATGCTAT
CAAAGGACAAATGACTCTTTAGATGGATAATTNCAATTGCGATTTGTCAC
AAATACTATCAAAAAACAAATGActctttaaagggataatcagatggttt
gtactatttggcatgtgggatccttttattgtcctgagcaaaatctaaaa
atatttttgcctaactattttccaaagtcgagatatttaagttacaaatt
tttggcttttaggatgaaaacaatagaacttcaacgtaagaaccgtgtaa
gatcccattttaaaaatttcaaattttaatatctcgattttggaaaattg
ttacacaaaaatactttgaggttttactaAGGACTGTAGAAGGTTTCTGt
aatctaaatatctcaaacatctgattatccctttaactgTAGTGGTCATC
ACAGGAAGCACGTAAGCTGATATGACCTTTCTTAAATGTTATTCTTTAAA
GTAGTTAGTTGAAAGATTGCTTGTAAATATTATTGTGTCTTATTTAAATA
TTACGCACACTAAAccataaaattatgaaaattaaatgattttaaatatt
tttaaactgaTTGCAattattattgattttttataCATTTCTTTGACGGA
GGTTGTCTGCACACAAACCCCactatctacggctaatttcaacaTTCTTT
ACCGTAGAGAGTCTGtcgtcattgtcttttctcatttgagatttttcaaa
acgaccgctgcgatggagtgtttaTGAGAGAGAGGAGACGACAAGAGAAG
TGTtgttatttataaatcatacttcatcgcagaggtctccgtacgggaat
ttttttattaaacagacaatgcacacagagtgtactacgaagcgataaac
cgtgagatacactctggtatagAATATGACGGAGTAGGTTTTAGATTAGT
TCTCTGCTTTGACTTCGTGTAATTTTCACATGTTTCAGTgtcatgaaaaa
aaaagaatagccTTTTTAACTAATTGGTAATATTCCActcttaaataaat
tttcaacaagcacaaaatcagAATTTAGGTTAATCACTTGAGAATTTTGG
TTTaagattttattgaaaacaatTTGAACTTGAATTTGTTTAAACTTTTC
TGAATCTTTCCCTAGTGAGGGAAATTTgactgaaaacttttttaacaaaa
tatttcCTGTTATCTTTTATATTCATTTATATTTATTGTACAGAATATAT
TACCAAGTCTTAGTTCAAAATATTGTTGttcaatttttattattttggga
taaatttttattttgttgtataCTTTTACTTTGCTTTGTTAGAAGATGTA
TGAAACACATT
Run BLAST on NCBI

protein sequence of TCONS_00003946-protein

>TCONS_00003946-protein ID=TCONS_00003946-protein|Name=TCONS_00003946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=442bp
MYFFDCLLQAHTFPFSSFRLNHTRKLLKLTMNDSHIGKLFFQTAGAHVLS
GFFAWAAILITGHQIALHTRHYTNPDQQKYIVRVLLIVPFYALDSWLSML
FFEKNYYIYFDTIRDCYEAFVIYNFLCLCYEYLGGEMAILSEIRGKVLKT
SYFTCTCCFSGRQINIAFLRACKKATLQFCFTKPIMAAITLVLVATRNYS
DGDFRPDKGYLYITIIYNISYTIALYGLFLFYNATKDLLTPYYPVLKFLT
VKFIVFMSFWQGFVLAIIEKCGMITTYHEIEAGTISAGYQNFILCIEMFF
AAVMLRFAFPYQVYRVQNHRLIDRDSLKEISSNLRRSINPKDILQDTIHN
FAPAYQQYAGVNKAKDVQVTIADDGRETVSYQVTIPHSARDDYDSDSASG
GERVSIGNKGVFKQQNDRFRTIDGHSPSLLLDTDDDKVNLLG
Run BLAST on NCBI

transcript from alignment at sc0000038:460575..467008-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003946 ID=TCONS_00003946|Name=TCONS_00003946|organism=Clytia hemisphaerica|type=transcript|length=6434bp|location=Sequence derived from alignment at sc0000038:460575..467008- (Clytia hemisphaerica)
CCAAGCCATGTACTCGTTCGTTTTACTGCGTTTTATGGAAATTTTGTACA
GATTACAGTAAATACATGGTTTGTCAGATAGTCCCAAGTTAGAGCAGTTG
AGGGTACAGGATATTACAATTTCCCCATATCTCGCTCTCACGCAATTGAC
ATATTTTCAATTAAATTCAGTTTAGATGCAATTTTCTGAGAACATCACTG
AGAAACGATGTATTTTTTTGACTGTTTGCTACAAGCTCACACGTTTCCTT
TCTCGTCATTTAGATTGAATCATACTAGAAAATTATTAAAGTTAACAATG
AATGACTCACACATTGGAAAACTGTTTTTCCAAACAGCTGGAGCTCACGT
TTTGTCTGGCTTCTTCGCTTGGGCAGCAATTCTCATCACAGGACACCAAG
TAAGTATTTATTAGCTTATTTCCCATTTAGAAATTTAATTTAATTTCTTA
AAGGTCTGGGGCCACTTTTTTGAAATAAAAAATCTTTCATAAAAAATTTA
TCAACAGTTTATGTCAAGAATTCTCTGAGACGGGTGGGCTACTTGAATCA
AAGTTTGGCATTCGAACACCCCAACTTCTTTATGTATATCATTTTGATGA
AATTTGTTTTAAGTGGCCCGAGACCTTTAGGTTAAAAATTGTCGATTCAT
TAATTTGAGAGACTCGTGAAATGCAATGAGAAATAATATTATTTTTGACT
GTTTGCCACAAGCTCACACTTCCTTTCTCATTATTTAAAATTGAATCATA
CTAGAAAATTATTAAAAGTGAACAATGAATACAGTAGTGTAACTGCGTGC
AGAATCTGGATTTCATGAGCATGACTTTATTTTAAAGAATCATCCATAGT
GTTAAAAGTTGTCTCAGTGGAGTAGGCTACATGATTTACCAAAATTTCAA
GAACATGTCGTGCTAATTTGCTGTATAAAATCCATTTTCATCTTAGACGA
AAAATCTTGTTTTGGCCACTACACTCAGTTTTCTCCTTTTTCGAGAATGT
TGGATTGGTTTGATTTATATATTTAGAAAAATTCAAGAAAAATAGAAAAA
TCTGTGTATAGTTATAAAAATATTGGTGTTATTTTATGTTTTATTTTTAT
TTTGTTTAGTACTTTCAACACTTCCCTTTCTTGAGGTCAAATCTCTTATC
ATCACCATATCTATGATTTTCTTGTTTAGATTGCTCTTCACACCAGGCAC
TATACCAACCCTGATCAACAAAAATACATTGTTCGAGTGTTGCTGATTGT
ACCTTTCTATGCTCTGGATTCATGGCTCAGCATGTTGTTCTTTGAAAAGA
ATTATTACATCTATTTTGATACTATTCGCGACTGTTACGAAGGTATAAGG
TCTAAATAATAAGGTTGAATAAAGAATTCTAAACTGCACGATGTCTAAAT
ACTACTACACACTCTAACATTTTAGCATGCTCTAAGCTCTAGTTTGGACG
ATCAACTGTTTGCCCTGCCTAATCTAATGATTAAGTGAGAAGAAAGTTGG
CAGTTAAAATAAAGAAGTCAGTGCTCTGATGTCAAAAGAGGGCATTGACT
TTAGACATTCCACTTTCTGCCCAATTTAATTCAGAATTAGAATTGGAATC
TAGATATGGCAATCTAAACAAGATCTCAGTAATTTGGCACTTGTTCGATG
GCTGGTATATATGGGCCTATGTTCCTTATTTTTTTGGTTCAATCTGCCTT
TGTTGAATTCGACTTAAAATCAGGATAACGAAAATCTTAATGTTTTTAAA
GCCCAATATTTTCATTGAACTTTCAGACTTGTTCTATCCGGTTTATGAAA
TTAATCATGAAAGTATGCCAAAATATGTCTCTGCAGGCAAACCATTCTTC
TCTGATGTTAAATCAATTTATATAAATGTTTCTTTTCAGCATTTGTCATC
TACAATTTCTTATGTTTATGTTATGAATATCTTGGAGGTGAAATGGCCAT
TTTATCTGAAATACGTGGAAAGGTCTTGAAGTAAGTTTTTGCACCCTGTA
ACCTATTTTTGGAAAAATCTTTCACCAAAAGTCCCCCTGTGGGGCTACAG
AAGGTACAAAATTCCGGAATACTGGTAAATATTGCATGAAGTACTGCACA
AAATAATAATAATAATTCACACTATCAATTAACAAAATGACTGCAAAAGA
GTTAAAACTGTTTTCAAAGTATTTGTTTTCAATGTCTTTTTTATTCAATG
GCTTAATGGCATATCAGCTGTAGATAAAGTTTTATTTTCCTGGATTTACT
TGACTTTAATAATCATCACAATATTAATAATTTTATAAATGACTTTTTAG
TTATTGCTATTTTCCCTTCCCAGCCAGTCCCAGCCATTCTAATTCGCGTC
GCAAATGCCGACATAAATTTGGCTATTGCCGACGTAAAAGTGCTTACTGT
ACTATAGAACCCAGAATTATTTTGCCGACGCAAATCAATCTGAATTAGAA
AGGCTGCTTCCCTTCAATTTTCTCAAACGTGCTTTTTACTTCTGAAATTT
TTCAGGACAAGCTACTTTACTTGCACGTGTTGTTTCTCTGGGCGACAAAT
AAACATTGCATTTCTCAGAGCATGTAAAAAGGTATGACGGTGTTATAATG
TTTTTTTATTTGTGCTAATAACTGAGCTAATAATAATAATAATAACATAT
ATTTTAAGTGGCGTACTCCGCTGCCTTTTAGAATTGTTTCCACAAAGGGC
CACTATGAATAGAACAAGAACTGGGAATGCATTTATTCTTAAAGGTTTTA
TTTTTACATAAATGTTCCTGTTTCATTCATATCAGACACATATTTCATAT
CAGGACAGTGTCTGTCTATTGTTATATCATGCTGGTATAAGCAAAAACTC
TTTTTGACCAATCTTGCTCCACACCCGTGTCAATCCAATGTGAAAAAGCT
TGTGAATTAAAATTGATGAGTAAACAAACGATATCACTTATTTAAAACCA
AAACCTTTAAAGTTGTTAAGTTATTTGAAATATAAATTACCCCTTGGCGC
TGTTAGGGCTGATATTTGTTTATTATAAATTTTTCCTTGTTTTGAATTAT
TATACTGAAGGCAAAACCTATCGTATTTAAAGCTTCAGATAACAACATTT
TTTCAAGTGAGAAATATGAAGCTCTTTCTATATTTCTAAGAATCGTATAT
TCTTCTTTTTTTCAGGCCACACTGCAGTTTTGTTTCACCAAACCCATAAT
GGCTGCCATAACATTGGTTTTAGTTGCTACAAGGAATTATTCAGATGGCG
ATTTCAGGTAATTCTGGGGAGTGATTTTCCGGAATGTCTTTTATTCATGT
TATGTGATTTTCGATTTTCTGATTGGGAATTTTTCATGACACAAAGCTAA
TGATTCCCCTGGATTCCCTCTTGTAGACCCGTAAATTTCAACACTTTCTC
CAATATAACTTTTCTGATATGATATAACTGATTTTCGGAATGTCTTTTAT
TCATGTTATGTGATTTTCGATTTTCTGATGATTGAGAATTTTTCATGACA
CAAAGCTAATGATTCCCCTGGATTCCCTTTTGTAGACCCGTAAATTTCAA
CACTTTCTCCAGTATAACTTTATTGTTCTTTTTTTTTCAGACCAGACAAA
GGATATCTCTACATCACAATCATATACAATATTTCTTACACCATCGCATT
ATACGGTCTCTTCTTGTTTTACAACGCGACCAAAGATTTGTTGACACCTT
ATTATCCCGTGCTCAAATTCTTAACGGTCAAATTCATTGTCTTCATGTCC
TTCTGGCAAGGTTTGTAAATTATTGTTTTTTTTGTCGTTTTTTTTCGATT
TATCAGATTTGATTTCTAAGTTTATTGGAAAATCTCTCATGGGTCATGTA
TAAATTCCTAAAAGACATGGTTCCGGTCCCAAACTACAATACTATCAAAA
ATCAAATTTTATCAATAGCCCAATTCTTTGTAATAATCAAGTCTTCGTCT
TAGGCTATCAGCAGATTTCGAGTTTTAACTCTTTTTGCTTAACTTGCTTT
TTTGACTCCTTCAGGTTTTGTGTTGGCGATCATTGAGAAATGCGGTATGA
TTACTACCTATCATGAAATCGAGGCTGGAACAATCTCTGCCGGTTATCAA
AACTTCATTCTGTGTATAGAGATGTTTTTCGCTGCCGTCATGCTACGATT
CGCTTTTCCTTACCAAGTGTACCGTGTACAGAATCACAGGCTAATTGACC
GTGATAGTTTGAAAGAAATTTCGTCCAATTTACGACGTAGTATTAATCCC
AAAGACATTTTACAAGACACTATTCATAATTTCGCTCCTGCCTACCAACA
ATACGCGGGTGTAAATAAAGCGAAAGACGTTCAAGTAACCATCGCGGATG
ACGGTCGAGAAACGGTCAGTTATCAGGTAACAATACCGCACTCCGCCCGT
GACGATTATGATAGCGATTCTGCTAGTGGGGGAGAGCGAGTTTCCATTGG
CAACAAGGGTGTTTTTAAACAACAGAACGACCGTTTTCGAACGATTGATG
GACACTCTCCTTCGCTTTTGTTGGATACGGATGATGATAAAGTGAACTTG
TTAGGTTGAGCATGGATTGGAAGAATCGTTTTGGAGATAAAATTTCACTT
TTTGCAGTTTTCACGAATACAAGAACCACTTCAAGACGATGCCACTTTGT
CATTATACTTTGCTTCTTCAAACTCTCGACTCTTTTTGAAGACCAATTTA
TAGTACCTGAAGGAAACTTTTTTTGGCGAGAATTATTTTAGGCGAATTGG
CGAATTTTGGCAAAATTTACCAAAACTCGTTCTCGCTAAAAAAAATGTCA
TGATTTTCTAAAGAAACCCCCAATTTTAGTTCAAAACACCCATTTTTAGG
CAAAAAAGAAATCAATTTACCCTGCCATAATCGCCGAATTTAGTTTTTGT
CAATAGTATCTTCCTTAAGATAATTTGGAGTCGTTGATAAGTTAAAAGGC
ATTTACTTCACCGATGAAGTTTCCTCCTGATTGTACTGTTGGTGTCAAAA
TATGAACAAAAGCTCCGGCAAATTGTATCCAAGAAAGCTGGTATAACAAC
ATGAAAAATGAAAATAATACGAGTTCTTTGAAATGTTATTGGGAATTCAA
TTTCGATTTGTCACAAATGCTATCAAAGGACAAATGACTCTTTAGATGGA
TAATTNCAATTGCGATTTGTCACAAATACTATCAAAAAACAAATGACTCT
TTAAAGGGATAATCAGATGGTTTGTACTATTTGGCATGTGGGATCCTTTT
ATTGTCCTGAGCAAAATCTAAAAATATTTTTGCCTAACTATTTTCCAAAG
TCGAGATATTTAAGTTACAAATTTTTGGCTTTTAGGATGAAAACAATAGA
ACTTCAACGTAAGAACCGTGTAAGATCCCATTTTAAAAATTTCAAATTTT
AATATCTCGATTTTGGAAAATTGTTACACAAAAATACTTTGAGGTTTTAC
TAAGGACTGTAGAAGGTTTCTGTAATCTAAATATCTCAAACATCTGATTA
TCCCTTTAACTGTAGTGGTCATCACAGGAAGCACGTAAGCTGATATGACC
TTTCTTAAATGTTATTCTTTAAAGTAGTTAGTTGAAAGATTGCTTGTAAA
TATTATTGTGTCTTATTTAAATATTACGCACACTAAACCATAAAATTATG
AAAATTAAATGATTTTAAATATTTTTAAACTGATTGCAATTATTATTGAT
TTTTTATACATTTCTTTGACGGAGGTTGTCTGCACACAAACCCCACTATC
TACGGCTAATTTCAACATTCTTTACCGTAGAGAGTCTGTCGTCATTGTCT
TTTCTCATTTGAGATTTTTCAAAACGACCGCTGCGATGGAGTGTTTATGA
GAGAGAGGAGACGACAAGAGAAGTGTTGTTATTTATAAATCATACTTCAT
CGCAGAGGTCTCCGTACGGGAATTTTTTTATTAAACAGACAATGCACACA
GAGTGTACTACGAAGCGATAAACCGTGAGATACACTCTGGTATAGAATAT
GACGGAGTAGGTTTTAGATTAGTTCTCTGCTTTGACTTCGTGTAATTTTC
ACATGTTTCAGTGTCATGAAAAAAAAAGAATAGCCTTTTTAACTAATTGG
TAATATTCCACTCTTAAATAAATTTTCAACAAGCACAAAATCAGAATTTA
GGTTAATCACTTGAGAATTTTGGTTTAAGATTTTATTGAAAACAATTTGA
ACTTGAATTTGTTTAAACTTTTCTGAATCTTTCCCTAGTGAGGGAAATTT
GACTGAAAACTTTTTTAACAAAATATTTCCTGTTATCTTTTATATTCATT
TATATTTATTGTACAGAATATATTACCAAGTCTTAGTTCAAAATATTGTT
GTTCAATTTTTATTATTTTGGGATAAATTTTTATTTTGTTGTATACTTTT
ACTTTGCTTTGTTAGAAGATGTATGAAACACATT

Coding sequence (CDS) from alignment at sc0000038:460575..467008-

>TCONS_00003946 ID=TCONS_00003946|Name=TCONS_00003946|organism=Clytia hemisphaerica|type=CDS|length=1329bp|location=Sequence derived from alignment at sc0000038:460575..467008- (Clytia hemisphaerica)
ATGTATTTTTTTGACTGTTTGCTACAAGCTCACACGTTTCCTTTCTCGTC
ATTTAGATTGAATCATACTAGAAAATTATTAAAGTTAACAATGAATGACT
CACACATTGGAAAACTGTTTTTCCAAACAGCTGGAGCTCACGTTTTGTCT
GGCTTCTTCGCTTGGGCAGCAATTCTCATCACAGGACACCAAATTGCTCT
TCACACCAGGCACTATACCAACCCTGATCAACAAAAATACATTGTTCGAG
TGTTGCTGATTGTACCTTTCTATGCTCTGGATTCATGGCTCAGCATGTTG
TTCTTTGAAAAGAATTATTACATCTATTTTGATACTATTCGCGACTGTTA
CGAAGCATTTGTCATCTACAATTTCTTATGTTTATGTTATGAATATCTTG
GAGGTGAAATGGCCATTTTATCTGAAATACGTGGAAAGGTCTTGAAGACA
AGCTACTTTACTTGCACGTGTTGTTTCTCTGGGCGACAAATAAACATTGC
ATTTCTCAGAGCATGTAAAAAGGCCACACTGCAGTTTTGTTTCACCAAAC
CCATAATGGCTGCCATAACATTGGTTTTAGTTGCTACAAGGAATTATTCA
GATGGCGATTTCAGACCAGACAAAGGATATCTCTACATCACAATCATATA
CAATATTTCTTACACCATCGCATTATACGGTCTCTTCTTGTTTTACAACG
CGACCAAAGATTTGTTGACACCTTATTATCCCGTGCTCAAATTCTTAACG
GTCAAATTCATTGTCTTCATGTCCTTCTGGCAAGGTTTTGTGTTGGCGAT
CATTGAGAAATGCGGTATGATTACTACCTATCATGAAATCGAGGCTGGAA
CAATCTCTGCCGGTTATCAAAACTTCATTCTGTGTATAGAGATGTTTTTC
GCTGCCGTCATGCTACGATTCGCTTTTCCTTACCAAGTGTACCGTGTACA
GAATCACAGGCTAATTGACCGTGATAGTTTGAAAGAAATTTCGTCCAATT
TACGACGTAGTATTAATCCCAAAGACATTTTACAAGACACTATTCATAAT
TTCGCTCCTGCCTACCAACAATACGCGGGTGTAAATAAAGCGAAAGACGT
TCAAGTAACCATCGCGGATGACGGTCGAGAAACGGTCAGTTATCAGGTAA
CAATACCGCACTCCGCCCGTGACGATTATGATAGCGATTCTGCTAGTGGG
GGAGAGCGAGTTTCCATTGGCAACAAGGGTGTTTTTAAACAACAGAACGA
CCGTTTTCGAACGATTGATGGACACTCTCCTTCGCTTTTGTTGGATACGG
ATGATGATAAAGTGAACTTGTTAGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002207XLOC_002207Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003946-proteinTCONS_00003946-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003946-exon-sc0000038-1575043694:466610..467008TCONS_00003946-exon-sc0000038-1575043694:466610..467008Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1575043694:465667..465829TCONS_00003946-exon-sc0000038-1575043694:465667..465829Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1575043694:465029..465119TCONS_00003946-exon-sc0000038-1575043694:465029..465119Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1575043694:464428..464503TCONS_00003946-exon-sc0000038-1575043694:464428..464503Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1575043694:463752..463843TCONS_00003946-exon-sc0000038-1575043694:463752..463843Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1575043694:463249..463418TCONS_00003946-exon-sc0000038-1575043694:463249..463418Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1575043694:460575..462994TCONS_00003946-exon-sc0000038-1575043694:460575..462994Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1510915933:466610..467008TCONS_00003946-exon-sc0000038-1510915933:466610..467008Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1510915933:465667..465829TCONS_00003946-exon-sc0000038-1510915933:465667..465829Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1510915933:465029..465119TCONS_00003946-exon-sc0000038-1510915933:465029..465119Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1510915933:464428..464503TCONS_00003946-exon-sc0000038-1510915933:464428..464503Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1510915933:463752..463843TCONS_00003946-exon-sc0000038-1510915933:463752..463843Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1510915933:463249..463418TCONS_00003946-exon-sc0000038-1510915933:463249..463418Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1510915933:460575..462994TCONS_00003946-exon-sc0000038-1510915933:460575..462994Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1491911889:466610..467008TCONS_00003946-exon-sc0000038-1491911889:466610..467008Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1491911889:465667..465829TCONS_00003946-exon-sc0000038-1491911889:465667..465829Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1491911889:465029..465119TCONS_00003946-exon-sc0000038-1491911889:465029..465119Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1491911889:464428..464503TCONS_00003946-exon-sc0000038-1491911889:464428..464503Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1491911889:463752..463843TCONS_00003946-exon-sc0000038-1491911889:463752..463843Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1491911889:463249..463418TCONS_00003946-exon-sc0000038-1491911889:463249..463418Clytia hemisphaericaexon
TCONS_00003946-exon-sc0000038-1491911889:460575..462994TCONS_00003946-exon-sc0000038-1491911889:460575..462994Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:460575..467008 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.87795	4.26501	4.44071	4.45619	16.6827	12.9462	9.09199	10.2284	7.65617	7.12367	10.9147	5.65979	3.51492	3.36164	3.76456	4.94718	4.24545	5.39071	3.13086	3.25913	5.52958	5.24714	6.36468	5.75177	6.40314	8.78158	2.28134	1.70133	5.06516	5.13931
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005178Ostalpha/TMEM184C
Blast
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BLAST of TCONS_00003946 vs. Swiss-Prot (Human)
Match: T184B (Transmembrane protein 184B OS=Homo sapiens GN=TMEM184B PE=1 SV=2)

HSP 1 Score: 375.17 bits (962), Expect = 3.152e-118
Identity = 192/327 (58.72%), Postives = 242/327 (74.01%), Query Frame = 1 
Query:  319 KLFFQTAGAHVLSGFFAWAAILITGHQIALHTRHYTNPDQQKYIVRVLLIVPFYALDSWLSMLFFEKN-YYIYFDTIRDCYEAFVIYNFLCLCYEYLGGEMAILSEIRGKVLKTSYFTCTCCFSGRQINIAFLRACKKATLQFCFTKPIMAAITLVLVATRNYSDGDFRPDKGXXXXXXXXXXXXXXALYGLFLFYNATKDLLTPYYPVLKFLTVKFIVFMSFWQGFVLAIIEKCGMITTYH----EIEAGTISAGYQNFILCIEMFFAAVMLRFAFPYQVYRVQNHRLIDR-DSLKEISSNLRRSINPKDILQDTIHNFAPAYQQY 1281
             +F  T  A  +SGFF W A+LIT HQI +H R Y+ P++Q+YIVR+L IVP YA DSWLS+LFF  + YY+YF T+RDCYEA VIYNFL LCYEYLGGE +I+SEIRGK +++S    TCC  G+  +I FLR CK+ATLQFC  KP+MA  T+VL A   Y DGDF    GYLY+TIIYNIS ++ALY LFLFY AT++LL+PY PVLKF  VK ++F+SFWQG +LAI+EKCG I   H     +  GT++AGYQ+FI+C+EMFFAA+ LR AF Y+VY  +      R   +K ISS+L+ ++NP DI+QD IHNF+PAYQQY
Sbjct:   38 PVFLMTTAAQAISGFFVWTALLITCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEALVIYNFLSLCYEYLGGESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGFLRFCKQATLQFCVVKPLMAVSTVVLQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIHSARVSVGEGTVAAGYQDFIICVEMFFAALALRHAFTYKVYADKRLDAQGRCAPMKSISSSLKETMNPHDIVQDAIHNFSPAYQQY 364
The following BLAST results are available for this feature:
BLAST of TCONS_00003946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T184B3.152e-11858.72Transmembrane protein 184B OS=Homo sapiens GN=TMEM... [more]
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