TCONS_00004282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004282
Unique NameTCONS_00004282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2046

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004282 ID=TCONS_00004282|Name=TCONS_00004282|organism=Clytia hemisphaerica|type=transcript|length=2046bp
CTTACTctatttgtttgtttatttattttatagtgacaaaaatatttaCC
AAATAAAAAGAAGTTGCTGGTGATGTATTGATAGGTGAAACACTCACAAA
ATGGAGGATACAGATTCATCAGGCGACCATCGAAGGAGTGGAATGCTTTT
GGATGAAGATTTCAACGTTTACGAAGAGCAGAAAGAAACGGATGAAGAAC
TCTCTAAAGCCGCACTGCAAGAAATAGCAGCTGGTGACACCACCGGGAGC
GCTCCAACCTCACCGACCTCACAACCAGAAGAAAGCAAAGAGAAACCAGA
ACGGCCTCCTGTTCCTATCCGTGTCAGTAGTCGACAACCCGATCCAAACG
TTCTTTCGGTGGAACAACTTGAAAAAGAATATGCTGACATCGCACGTTAC
AAAATATTCCAATTGGCCGGTGATGATTTAACGGGAAGGCCAGTGATTGC
ATTTAGTGCATGTCGACTTCCTGTTCGTAACCTGATTGATCACCAAAAAC
TTTTCAAttttttgaagttaatGTTGGACCAGTATGTGGAGAATGATTAC
ACCATCGTTTACTTCCATTATGGATTGAACTCGCAAAACAAACCTTCCCT
CAAATGGCTCCTCAATATCTATCGAGAACTGGAACGAAAATATCGGAAGA
ATTTGAAAGCTCTTTATATCGTCCACCCGagtaatttcatcaaaatcatt
ttcaatatGTTTTATCCTCTAATAAGCACAAAGTTCGGACGGAAAATCAA
CAACATTAAGAAATTGGACGAATTGGCGCCTCATATTCGATTGGACCAGT
TAGATATTCCAAAAGAAGTGAGAGACCACGATGAGAAGATAACAGTTCGG
ATGAAACCATCCAACAACTCTTCTATTTTTCACACCAAACTCGAAACACC
AAAAACACAAGTATTCGGCATTTCACTCAAAACGTTAAAAGAGCGAACAG
GGGAAGATATTCCAGAAGTTGTGAGATCCACTGTTCAATTCATTGAGCAA
AATGCTCTGGACGTGGAGGGAATATTCCGTCGGTCTCCTCACGCTAACTC
CGTCAAAGACGTCTCCCAAAAATACAATCAtgGCGAACAGGTGACGTTTT
CATCAGATGAAGTTCATTTACCGGCTgccattttgaagaaatttttacgG
GAATTGCCAGATCCTTTGTTGACGTTTGAATTATATGACCAAGTGATGGA
CGCGTGCTCTTTACCCGAGGAAGAGAGGTTGAGCTTCACACAAGACATGA
TGAAAAATTCAATGGCTGAAGAAAATCGTATTATTTTGTCATATCTCATG
CACTTTCTACAGAAGGTTGTGGACCACTCATCAGCCAATCGAATGACGTC
TGGTAGTTTAGCAATTGTTTTTGGCCCCAATATTTTGTGGTCTCGTTCGG
AGGCCTCTACTTTGACGTCGATGTCAAAAGTGAACTCTTTCTGCAAATAT
CTAATTGACAATACGCATCTGATATTTGATGAATCGGTCGCTTGATAAAA
ATTGTCGCATAAAGACGAGTTTAGTTCATTTCATTCTGGACTACCTCATT
GAACCGGGGACTAGTGAGTGGTGAGTCAATTGCCTATATCGCGATCACTG
GAACACTAGACTACTTGTCTCCACTGTGTACTTTACGTATGCATACTCGG
CCGCTGGATATGGAGTTATAATGGGATAGAACTGATGATGTAGTCAGGTT
ACAGTTGATGaatgaaatcaaattttattacatTAAATTATATAATTAGC
TAATTACtagtttattttgaaatttccattgaAAGCTTACATTGGGAACA
AGTGAAAATCCAAAGTACTTTCACATTCGAATTCAAGTAAAATCATACTA
TTTCCAAACATAATTTCACTTTGATTTTTACAATCTTGAATGCTTTAGTT
ACCTGTTTATCACGAATAataattatttatatttttatagatCGAAATCT
TTGCAGTGCATGACGAGCATGCGCAACGGTTGTAAATACTacgaatttct
tttttttcttctcataCATAGAAAATATAAATCGTGACCATTTGCG
Run BLAST on NCBI

protein sequence of TCONS_00004282-protein

>TCONS_00004282-protein ID=TCONS_00004282-protein|Name=TCONS_00004282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MEDTDSSGDHRRSGMLLDEDFNVYEEQKETDEELSKAALQEIAAGDTTGS
APTSPTSQPEESKEKPERPPVPIRVSSRQPDPNVLSVEQLEKEYADIARY
KIFQLAGDDLTGRPVIAFSACRLPVRNLIDHQKLFNFLKLMLDQYVENDY
TIVYFHYGLNSQNKPSLKWLLNIYRELERKYRKNLKALYIVHPSNFIKII
FNMFYPLISTKFGRKINNIKKLDELAPHIRLDQLDIPKEVRDHDEKITVR
MKPSNNSSIFHTKLETPKTQVFGISLKTLKERTGEDIPEVVRSTVQFIEQ
NALDVEGIFRRSPHANSVKDVSQKYNHGEQVTFSSDEVHLPAAILKKFLR
ELPDPLLTFELYDQVMDACSLPEEERLSFTQDMMKNSMAEENRIILSYLM
HFLQKVVDHSSANRMTSGSLAIVFGPNILWSRSEASTLTSMSKVNSFCKY
LIDNTHLIFDESVA
Run BLAST on NCBI

transcript from alignment at sc0000041:376028..383437-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004282 ID=TCONS_00004282|Name=TCONS_00004282|organism=Clytia hemisphaerica|type=transcript|length=7410bp|location=Sequence derived from alignment at sc0000041:376028..383437- (Clytia hemisphaerica)
CTTACTCTATTTGTTTGTTTATTTATTTTATAGTGACAAAAATATTTACC
AAATAAAAAGAAGTTGCTGGTGATGTATTGATAGGTGAAACACTCACAAA
ATGGAGGATACAGATTCATCAGGCGACCATCGAAGGAGTGGAATGCTTTT
GGATGAAGATTTCAACGTTTACGAAGAGCAGAAAGAAACGGATGAAGAAC
TCTCTAAAGCCGCACTGCAAGGTTCGTGCTTGGTCCTTCTTCTTCTGTCT
ACAATCATGGACAAAGTATTTGATAAAAAAGGGATTTTCATGCAAAATNT
GCAAGGTTCGTGCTTGGTCCTTTTTCTTCTGTCTATAATCATGGACAAAG
TATTTGATAAAAAAGGGATTTTCATGCAAAATTTTAAACACCAAAATTTA
TTTTTAAGTTCTCTAAGTTACCTCTGGAATGTTAAGTTTTGACTTTGAGT
TTTAACAAAAGACTTACGACAAAATGATCCCTTGGGATCTCAGGATTCAA
AAGCTCTAAATTTTCCAATAAGGCTGGGAATATAGCTTAGAAGCCACTGA
ACCCTCCAAACTCGAAATATCCAATGAAATAAACTGGAAGTACTAAAATT
GCAATTCTCGCTCGAAATCTTATCCTGAAAAACATTAAAATTCTCAACAT
ATTTGACTTGTTTTGATAAACTAAAATTCAACTACTATATCAGAATCCGG
CCATATACACAACTACCTTTTCCAAAAAGAAAAACATTGCTATCCCCTCG
TTGTGCCAAATTCTAGTGCTAAATTTCTCGCTATCTTTTTCAAGATTAAG
GAATGGCTTAAATGAAAAATGTGAGGGAAATCGCTATAAGCCCCTATTCT
ATTCTGTAAAATTTTTAGTTCTCGCTGATATTTAAAAACATAACATATTG
GTTTTATTTGAGCTTCGATTTTTAGTGTTTATCTAGCGAGACATAAGTCT
CCCTTAGCCTTATCTGTTTTCCTTTTCGTAAAATATCAAACTTGTTCAAC
TCTCTCCCTTGGCTACGATATTATTATCGTTCCACACATAGCTTAATAAC
TTATTGACTCGCCTGACCTTGGTTTTGATTGCATTCCGTTTCATTTCATT
TGTGTAGTTCTATATTACTGGCTTTGGATCCTTGACTTTTTAGACTTGAT
TTTCTTTTTGGTTGTTTTGAAAAAATGATCGAGTATTTCATCGACGACTC
CGATTCGGAATATTTTGGTAATTTATTTATGTTCTTGGGAGAACTGGAGA
TATTGATAGTCGACCCTGAGCTGTGGAAGAAGGATTATTGTTCTTATGTT
CTTCTCATACCTAGATCGAGTGATAGTGTTAATGATTTATGTTCTGCTTC
AATTAGTTCAACGAGGATATTCAAGTGTTAAAGAACTTATTATCCCAAAA
ATCAAACAGCAACCTTAACCAAAGGAGTTGTATGAATAAAAACGTAATAA
AACCAAAAAGGATGAAAGTTAATCATATTAGACTGTGTTTATGGTATTTC
ATAGTAGATTGGTTGATTTCGCTTGAATTTTGACTTAACTTTTATCCGTT
TATTATTCCATAGAAATAGCAGCTGGTGACACCACCGGGAGCGCTCCAAC
CTCACCGACCTCACAACCAGAAGAAAGCAAAGAGAAACCAGAACGGCCTC
CTGTTCCTATCCGTGTCAGTAGTCGACAACCCGATCCAAACGTTCTTTCG
GTGGAACAACTTGAAAAAGAATATGCTGACATCGCACGTTACAAAATATT
CCAATTGGCCGGTATGTCGTTTTTTTCATGGTCCAATTCTTCTCAATTAA
AGGTTTTATTTTTACATAAGTGTTCCCGTTTCATGTCAGACACATATTTC
ATATATCAGGATATCATGTCTACCTTTTGTTATATTATGCTTATAAGCAA
AAAAATGTTTTTCTTTCCTCTTTCTGGCCAATCTTGCTCCACATCCGTGT
CAATCCGATGTAAAAAATCTTGTAAATTAAGATTAATGATAAAGCAAAGG
TTATCACCCTTATTTAAGCTATAATGTTTTGTTTCCTATTCATCACACTT
CTCAAGCTTTGCCCCCCTTCGTTTATATTACTGTCACTTACGGACTCATT
TTATTGCTTATATCGTTTAAGACTCCATCATTAGCTATATCTATCGGCTG
TTCGTTTAGGTGATGATTTAACGGGAAGGCCAGTGATTGCATTTAGTGCA
TGTCGACTTCCTGTTCGTAACCTGATTGATCACCAAAAACTTTTCAAGTA
AGTCGTCCACTTAAAGTACCTCTTCTTTCAAACACTTCTTCTCTTAAGCG
GACCAACCACTTCAAATCATTATCAATTTCGATCCTGATGTCGTTTTTTT
TCTAATTACAAAAGTTTTTCTCGATACAACACCATTCGTTTCTCTCAACA
TTAGTATAACCTACCTCGGAGGTCCTTTGAATTTTAACCTTTGTTCGTCC
GTTGGTTCGTCTGTTAAACAGCTTTTCTCGGGATTGACCATTTTTTGAAT
AGTGATGCTAAATGACAGTTACCAAAAAGTAACTGACCCCGCGAAACTAT
CAGTCAGGCCATCTGAAATTTTTTGGGGATTGTCGATTCTCCAAAAAATT
TGATTTTAGTGTGCGCCCCCCCCCCTGTGTGCGCAGGGAAATGCGCAATG
GTTTTCATAGTAATTATGATTGAAGACAGTGTGTCCATCTGAAAATTATT
TTGGAGATCGTTAAGTCTCCAAAAGTTTTAATTTTAGTGTGCCTAGGGAA
ATATTTTTCTAAATTTGTTTTTGCATGTCCAACGACTAGAATATTGATTA
TTCTTTCTTTGTTTCTTCTTCTCCAGTTTTTTGAAGTTAATGTTGGACCA
GTATGTGGAGAATGATTACACCATCGTTTACTTCCATTATGGATTGAACT
CGCAAAACAAACCTTCCCTCAAATGGCTCCTCAATATCTATCGAGAACTG
GAACGAAAGTAAGTTTTTCAATCATCATATAACGTTTTTACCCACTATAC
TATTTATAGTGATTTTGAATGAAGAACTGGATCTTTACATTTGAAGAAGT
ATTGTTTTAAAAACTCCGGTCGATCAACCCCAAATGAAATGAAAAACGTT
TTGAAATATTTCTTTTCTTCTCTTTAGATATCGGAAGAATTTGAAAGCTC
TTTATATCGTCCACCCGAGTAATTTCATCAAAATCATTTTCAATATGTTT
TATCCTCTAATAAGGTAATTCTTCTTACTTCCAAATAGTTAAATTACACA
AATCAATGAAAAACTTTTTTCGGATCTAGTCTTCTTTGCATGTCGAATCT
TCAATGAAATTCTTAAAAGTAAGAAGTCTATAAATTTCATATAATTACAA
AAAGACTTTCTCAAACTGCAGGGTAGGTTGCATTTTTCTTTTAGCACAAA
GTTCGGACGGAAAATCAACAACATTAAGAAATTGGACGAATTGGCGCCTC
ATATTCGATTGGACCAGTTAGATATTCCAAAAGAAGTGAGAGAGTGAGTA
ATTCCTAAAATAAAACCGGGGTGTTTTATTTTGCGCATTACATATTTCTT
TATTTCATAAAGTTATATTTCAAAAGTCATCATGTAAAATAGGTACATAA
CTAAAAGTTTCATGCTAGATACGCAATCATCAGATGTATAAAACATTAAA
AAATGTAAATATTTCTTTATTTCGCATCCTTTCAATTGACTTTACTCTTT
CAAACATCTTTATTTCAGCCACGATGAGAAGATAACAGTTCGGATGAAAC
CATCCAACAACTCTTCTATTTTTCACACCAAACTCGAAACACCAAAAACA
CAAGTATTCGGCATTTCACTCAAAACGTAAGTTATCGTCAGAAGTTGAAT
TCAAACTGTTCGTGCAAAGTAATGACTAGAGGAAGTGGATGACTATCGAA
ATACTGAGCTCTTTAAGCGATTAAAAATTGGTTTGTTCAAGCTTTTTCTA
TGGTTCTTAATAGACGATTTTGCTTTTTTTGATTTCAGGTTAAAAGAGCG
AACAGGGGAAGATATTCCAGAAGTTGTGAGATCCACTGTTCAATTCATTG
AGCAAAATGGTAACGCAAATCTCTTTTCATTTTTAATAAAATCTTTCAAA
AGCCTGATATTTTTCTAGGTCCTTGGTAAAAACTGAAGTGTTTAGCTACA
AAAAAAATTGATATAAAGTTATCATGCAGCACCTTACTGAGCTGTCTCGG
AGAATACATATGGGAAGTATTAAGTTACTGGGTTGATTAATAATAGTTTA
TAAATGTAGTCAGTATCAAAGAAATACAATGAAGGCCATGTGTTAATGAA
GTTGCAAATGGCCTACGAATCTTTAAGTTCTCCATTATTCTCTTTTTCAG
CTCTGGACGTGGAGGGAATATTCCGTCGGTCTCCTCACGCTAACTCCGTC
AAAGACGTCTCCCAAAAATACAATCATGGTAAAATAATATTTTTAATGAT
TTAGTGTAGTGGAATTAACTCTACGGTAGTACCTTNGATATATTTTCAAT
GATGTTTAGTTCACTTTAATTATCGTATAGTACCGTTTTAAATTCATGAT
TTTTGTCAGCTGTGTAATCTTTTCAAATGATTTTTAACTGTGACATCTTT
AGTGCAATGGATTTCGGGTAAATCGCACTCAATATTCCCTTTCGTTGACT
TATGACGAACGAAAATTCAAAATTCTTATCATCTACTGTTTCTCTTCAGG
CGAACAGGTGACGTTTTCATCAGATGAAGTTCATTTACCGGCTGCCATTT
TGAAGAAATTTTTACGGGAATTGCCAGATCCTTTGTTGACGTTTGAATTA
TATGACCAAGTGATGGACGCGTGCTGTAAGTGGTTCTCTTCTATTTTATC
GTGAACCTTGAATTGCTGAATTTGGACTTGAAAGATATCATTGAATACAG
ATTTTTAAGAGATGAGATAGTGATTGGTGCCGAGTGCACGTGACCAAACT
ATTTTAATCAATCATTCAATTATAATTCTTTGACCCCATACGTTATGGTC
CAAAATTTGCGTTCTTTTTTTTAAATAGAAAAATTTTGCTATATGGCGAA
CCCGAAAAATTTTTTTGTTTCCGGTCCACCGGCCGGGTGAAAATTTATTT
CGTCGTCACCCGGCCGCATTTTTTTTCGTACATCATCGTTAGGGTTAGGG
TTAGTTTGTTTGTTTGGAAAACTTTCGTGAATCAGTTTTTGAGGCGTGTG
ATTTATCTCACGTGATATTTGATATTCTACTGTAAAATGCACGCCTAGAA
ATCACTTGGAATGAAGGTTTTTTCCTGATCATTGTTATAGAAATGAAATT
TCATTCATCTCAAACTAAACCCTGCATTGTTTTTGTTAATTCTGGCTTGT
AACTCAACTTTTAAGAATGTTTTTTTTATATAAATGTTTTTTTTATATAC
AACTTGGTTTTTATAAAAGAATCATGCTGATTTGTGAGTAAAATAAATAG
AAACATTCACAAAGTGGGGACTTTGCAGTAAGTAAACAGCTTTCTTTTTA
TAAAAGGAATCATGCTGACTTGTGAGTAAAATAAAAAGAAACATTCATAA
AGTGAGGATTTAAAAAATTGGGGAAATGTTTCTCTCACTCTACTTTTTTT
ACTTTTTTTGTCAAAAAAGCTCACTTCGTAATGTAACAGTTTGGAGCCTT
TAGCAATTGAAGATAAATATTCAAAATGAAAGAGTGTCCAGTTCTTAGAG
ATATTGTAACACAATTGAAAATATAAACGATGAAAATTAAGCATTTGAAT
AATCGCACGCCTAGACCACTATAAATCAAAATCTAGGCGTGCGATGATCA
CACGTGAATTTTTCTTATGCCGAAGCCTGTAGCGATGTCGAGTTACTACA
GATTTAAGGTAAAGAAGACCATCATTTTAACTTCTACGAGTGCTTTAAAA
AATCGAGTTTTGGGATCGAAATTTAGCAAAAANTGCGGCCGGCCGGGTGA
GTGTTTTTTTCGTCACCCGGTGGACCGGAAACAAAAATATTTTTAGGGTT
CGCCTATGGATCATTTGTCAGTATTTTTGTTCTTCATCTTAGCTTTACCC
GAGGAAGAGAGGTTGAGCTTCACACAAGACATGATGAAAAATTCAATGGC
TGAAGAAAATCGTATTATTTTGTCATATCTCATGCACTTTCTACAGAAGG
TATTAACCACTCATTATGCTACTCAACTAGGGATGAAAGCAACATTGATA
TTTGGGGAAGATTTTGTGCTTGATTTGGAATTTCTTTGGGATTCTTTATA
TTTCACGATACGTTATGTGGGTAATAGCTTAAAAGAGTCTGGACTGAAGG
GGACTGAAATTCTAAGCACTACAAAGGGTGAAAGAACCAAGATGATTATA
GTAGAAGCCAACCCTCAGGACTTGTTGTAGTATACTTTTTTGTTCAGAAT
TTCATGTGCCATCCGATGATAACAATCATTTTCGTTTGATTCAACTTTGA
AAAATTGTTCACTTATTTTAAGGTTTTGGAGTTTTGCCTACGACGTCAGT
TTTTTGGCCATATAAACTTTTGCCAGGCCTAATGTGGGTCCCCTCTCAAA
AAAAGTTTCAAAATCCTATCTACTTTCGAACCGATCACATAGGGTTGAGT
CCCACGAAAGATGCTACGGACCCTAAGGGTTGGTCCCCTGCTATTACTTA
AAATAATTTTCTCACTTCGATATTTTCAGGTTGTGGACCACTCATCAGCC
AATCGAATGACGTCTGGTAGTTTAGCAATTGTTTTTGGCCCCAATATTTT
GTGGTCTCGTTCGGAGGCCTCTACTTTGACGTCGATGTCAAAAGTGAACT
CTTTCTGCAAATATCTAATTGACAATACGCATCTGATATTTGATGAATCG
GTCGCTTGATAAAAATTGTCGCATAAAGACGAGTTTAGTTCATTTCATTC
TGGACTACCTCATTGAACCGGGGACTAGTGAGTGGTGAGTCAATTGCCTA
TATCGCGATCACTGGAACACTAGACTACTTGTCTCCACTGTGTACTTTAC
GTATGCATACTCGGCCGCTGGATATGGAGTTATAATGGGATAGAACTGAT
GATGTAGTCAGGTTACAGTTGATGAATGAAATCAAATTTTATTACATTAA
ATTATATAATTAGCTAATTACTAGTTTATTTTGAAATTTCCATTGAAAGC
TTACATTGGGAACAAGTGAAAATCCAAAGTACTTTCACATTCGAATTCAA
GTAAAATCATACTATTTCCAAACATAATTTCACTTTGATTTTTACAATCT
TGAATGCTTTAGTTACCTGTTTATCACGAATAATAATTATTTATATTTTT
ATAGATCGAAATCTTTGCAGTGCATGACGAGCATGCGCAACGGTTGTAAA
TACTACGAATTTCTTTTTTTTCTTCTCATACATAGAAAATATAAATCGTG
ACCATTTGCG

Coding sequence (CDS) from alignment at sc0000041:376028..383437-

>TCONS_00004282 ID=TCONS_00004282|Name=TCONS_00004282|organism=Clytia hemisphaerica|type=CDS|length=1395bp|location=Sequence derived from alignment at sc0000041:376028..383437- (Clytia hemisphaerica)
ATGGAGGATACAGATTCATCAGGCGACCATCGAAGGAGTGGAATGCTTTT
GGATGAAGATTTCAACGTTTACGAAGAGCAGAAAGAAACGGATGAAGAAC
TCTCTAAAGCCGCACTGCAAGAAATAGCAGCTGGTGACACCACCGGGAGC
GCTCCAACCTCACCGACCTCACAACCAGAAGAAAGCAAAGAGAAACCAGA
ACGGCCTCCTGTTCCTATCCGTGTCAGTAGTCGACAACCCGATCCAAACG
TTCTTTCGGTGGAACAACTTGAAAAAGAATATGCTGACATCGCACGTTAC
AAAATATTCCAATTGGCCGGTGATGATTTAACGGGAAGGCCAGTGATTGC
ATTTAGTGCATGTCGACTTCCTGTTCGTAACCTGATTGATCACCAAAAAC
TTTTCAATTTTTTGAAGTTAATGTTGGACCAGTATGTGGAGAATGATTAC
ACCATCGTTTACTTCCATTATGGATTGAACTCGCAAAACAAACCTTCCCT
CAAATGGCTCCTCAATATCTATCGAGAACTGGAACGAAAATATCGGAAGA
ATTTGAAAGCTCTTTATATCGTCCACCCGAGTAATTTCATCAAAATCATT
TTCAATATGTTTTATCCTCTAATAAGCACAAAGTTCGGACGGAAAATCAA
CAACATTAAGAAATTGGACGAATTGGCGCCTCATATTCGATTGGACCAGT
TAGATATTCCAAAAGAAGTGAGAGACCACGATGAGAAGATAACAGTTCGG
ATGAAACCATCCAACAACTCTTCTATTTTTCACACCAAACTCGAAACACC
AAAAACACAAGTATTCGGCATTTCACTCAAAACGTTAAAAGAGCGAACAG
GGGAAGATATTCCAGAAGTTGTGAGATCCACTGTTCAATTCATTGAGCAA
AATGCTCTGGACGTGGAGGGAATATTCCGTCGGTCTCCTCACGCTAACTC
CGTCAAAGACGTCTCCCAAAAATACAATCATGGCGAACAGGTGACGTTTT
CATCAGATGAAGTTCATTTACCGGCTGCCATTTTGAAGAAATTTTTACGG
GAATTGCCAGATCCTTTGTTGACGTTTGAATTATATGACCAAGTGATGGA
CGCGTGCTCTTTACCCGAGGAAGAGAGGTTGAGCTTCACACAAGACATGA
TGAAAAATTCAATGGCTGAAGAAAATCGTATTATTTTGTCATATCTCATG
CACTTTCTACAGAAGGTTGTGGACCACTCATCAGCCAATCGAATGACGTC
TGGTAGTTTAGCAATTGTTTTTGGCCCCAATATTTTGTGGTCTCGTTCGG
AGGCCTCTACTTTGACGTCGATGTCAAAAGTGAACTCTTTCTGCAAATAT
CTAATTGACAATACGCATCTGATATTTGATGAATCGGTCGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002378XLOC_002378Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004282-exon-sc0000041-1575043694:383217..383437TCONS_00004282-exon-sc0000041-1575043694:383217..383437Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1575043694:381677..381874TCONS_00004282-exon-sc0000041-1575043694:381677..381874Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1575043694:381191..381278TCONS_00004282-exon-sc0000041-1575043694:381191..381278Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1575043694:380480..380611TCONS_00004282-exon-sc0000041-1575043694:380480..380611Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1575043694:380224..380310TCONS_00004282-exon-sc0000041-1575043694:380224..380310Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1575043694:379945..380043TCONS_00004282-exon-sc0000041-1575043694:379945..380043Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1575043694:379612..379719TCONS_00004282-exon-sc0000041-1575043694:379612..379719Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1575043694:379379..379449TCONS_00004282-exon-sc0000041-1575043694:379379..379449Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1575043694:379010..379087TCONS_00004282-exon-sc0000041-1575043694:379010..379087Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1575043694:378613..378738TCONS_00004282-exon-sc0000041-1575043694:378613..378738Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1575043694:377289..377395TCONS_00004282-exon-sc0000041-1575043694:377289..377395Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1575043694:376028..376758TCONS_00004282-exon-sc0000041-1575043694:376028..376758Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1510915933:383217..383437TCONS_00004282-exon-sc0000041-1510915933:383217..383437Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1510915933:381677..381874TCONS_00004282-exon-sc0000041-1510915933:381677..381874Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1510915933:381191..381278TCONS_00004282-exon-sc0000041-1510915933:381191..381278Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1510915933:380480..380611TCONS_00004282-exon-sc0000041-1510915933:380480..380611Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1510915933:380224..380310TCONS_00004282-exon-sc0000041-1510915933:380224..380310Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1510915933:379945..380043TCONS_00004282-exon-sc0000041-1510915933:379945..380043Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1510915933:379612..379719TCONS_00004282-exon-sc0000041-1510915933:379612..379719Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1510915933:379379..379449TCONS_00004282-exon-sc0000041-1510915933:379379..379449Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1510915933:379010..379087TCONS_00004282-exon-sc0000041-1510915933:379010..379087Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1510915933:378613..378738TCONS_00004282-exon-sc0000041-1510915933:378613..378738Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1510915933:377289..377395TCONS_00004282-exon-sc0000041-1510915933:377289..377395Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1510915933:376028..376758TCONS_00004282-exon-sc0000041-1510915933:376028..376758Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1491911889:383217..383437TCONS_00004282-exon-sc0000041-1491911889:383217..383437Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1491911889:381677..381874TCONS_00004282-exon-sc0000041-1491911889:381677..381874Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1491911889:381191..381278TCONS_00004282-exon-sc0000041-1491911889:381191..381278Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1491911889:380480..380611TCONS_00004282-exon-sc0000041-1491911889:380480..380611Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1491911889:380224..380310TCONS_00004282-exon-sc0000041-1491911889:380224..380310Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1491911889:379945..380043TCONS_00004282-exon-sc0000041-1491911889:379945..380043Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1491911889:379612..379719TCONS_00004282-exon-sc0000041-1491911889:379612..379719Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1491911889:379379..379449TCONS_00004282-exon-sc0000041-1491911889:379379..379449Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1491911889:379010..379087TCONS_00004282-exon-sc0000041-1491911889:379010..379087Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1491911889:378613..378738TCONS_00004282-exon-sc0000041-1491911889:378613..378738Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1491911889:377289..377395TCONS_00004282-exon-sc0000041-1491911889:377289..377395Clytia hemisphaericaexon
TCONS_00004282-exon-sc0000041-1491911889:376028..376758TCONS_00004282-exon-sc0000041-1491911889:376028..376758Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004282-proteinTCONS_00004282-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:376028..383437 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.3048	48.2928	19.5368	13.699	45.8352	36.2161	49.0228	50.8137	40.559	45.2308	34.3513	27.9484	29.6882	29.3445	24.1121	26.2288	35.7639	34.5971	30.4927	34.566	24.9438	23.8788	42.5403	40.3006	27.722	28.3931	17.6168	13.8688	31.7377	28.0086
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000198RhoGAP_dom
IPR001251CRAL-TRIO_dom
IPR008936Rho_GTPase_activation_prot
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
Blast
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BLAST of TCONS_00004282 vs. Swiss-Prot (Human)
Match: RHG01 (Rho GTPase-activating protein 1 OS=Homo sapiens GN=ARHGAP1 PE=1 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 4.995e-113
Identity = 174/369 (47.15%), Postives = 252/369 (68.29%), Query Frame = 2 
Query:  380 YADIARYKIFQLAGDDLTGRPVIAFSACRLPVRNLIDHQKLFNFLKLMLDQYVENDYTIVYFHYGLNSQNKPSLKWLLNIYRELERKYRKNLKALYIVHPSNFIKIIFNMFYPLISTKFGRKINNIKKLDELAPHIRLDQLDIPKEVRDHDEKITVRMKPSNNSSIFHTKLETPKTQVFGISLKTLKERTGED--IPEVVRSTVQFIEQNALDVEGIFRRSPHANSVKDVSQKYNHGEQVTFSS-DEVHLPAAILKKFLRELPDPLLTFELYDQVMDACSLPEEERLSFTQDMMKNSMAEENRIILSYLMHFLQKVVDHSSANRMTSGSLAIVFGPNILWSRSEASTLTSMSKVNSFCKYLIDNTHLIF 1477
            Y DIAR++I ++AGDD  GR +I FSACR+P  + +DH KL  +LK  LDQYVE+DYT++Y H+GL S NKPSL WL + YRE +RKY+KN+KALYIVHP+ FIK +  +F PLIS KFG+KI  +  L EL+ H++L+QL IP++V  +D+ +    K    +            Q FG+SL+ L+E+  E   IP V+R TV +++ +AL  EGIFRRS +   V++V QKYN G  V F   +E+HLPA ILK FLRELP+PLLTF+LY  V+   ++ E +R+  T  +++ ++ EEN  +L +L  FL ++  HS  N+MT+ +LA+VFGPN+LW++  A TL +++ +N+F K+L+D+   +F
Sbjct:   64 YYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPLISFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ-TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELF 431
The following BLAST results are available for this feature:
BLAST of TCONS_00004282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHG014.995e-11347.15Rho GTPase-activating protein 1 OS=Homo sapiens GN... [more]
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