|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004509 ID=TCONS_00004509|Name=TCONS_00004509|organism=Clytia hemisphaerica|type=transcript|length=4603bpRun BLAST on NCBI protein sequence of TCONS_00004509-protein >TCONS_00004509-protein ID=TCONS_00004509-protein|Name=TCONS_00004509-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1365bp MKDRSINGEISDVSTQHTIYLQAVRKLIQDGQNFEDDIFNLVDVLSQVLCRun BLAST on NCBI transcript from alignment at sc0000045:483618..496156+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004509 ID=TCONS_00004509|Name=TCONS_00004509|organism=Clytia hemisphaerica|type=transcript|length=12539bp|location=Sequence derived from alignment at sc0000045:483618..496156+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000045:483618..496156+ >TCONS_00004509 ID=TCONS_00004509|Name=TCONS_00004509|organism=Clytia hemisphaerica|type=CDS|length=4098bp|location=Sequence derived from alignment at sc0000045:483618..496156+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004509 vs. Swiss-Prot (Human)
Match: TGRM1 (TOG array regulator of axonemal microtubules protein 1 OS=Homo sapiens GN=TOGARAM1 PE=1 SV=4) HSP 1 Score: 197.208 bits (500), Expect = 1.685e-50 Identity = 147/479 (30.69%), Postives = 246/479 (51.36%), Query Frame = 2
Query: 707 VKKSVLQVLHVYYRHTKDISHGLQHLIDHGINTDLKAVRNEVLVSIPALMSTGFAASQLDRLVISIINCLNLIGNGESILPVTLCLEHLRNI---IGENEFDIILDQLDPSLSNLYRAVVQN------PTY-TWEGS-----------QKQTSNQMADIIPNEILNNLDSEKSWQTRSDAINDL----FTFVSQTMDNNSLLYFCRRILDYISLLVDDANFNVALVSMNILHQIIIRTSEQVKVHMDLIIQILLKKLSDGKLIMRKINLRIALSLMHSLSPMVFLKSIFPILKNKSSRVREEILNMIIAALLSFPSSEFNLVLLPDDIAFTLLDNRKRVRHASLECFAILAQQLGPGNLSPLVSAVDILERKNKNAEGLLLAVQSRLGRKMLPKINENELVQYAVKLPTS---KSTDGQLKPDVAWIISGMSVSGYX---------XXXXXXXXXXXXCDRRILSA--GRNKLPWQENQ 2026
++K LQ+LH+ + + L+ LI G+ + +R + +P L++T LD L II+ +G+ E+ L+ I +G++ F + +L +L Y +++ P Y E S SN IIP E+ + L ++ ++ R+ A+ +L F + ++SL+ F + + L+DD+NF V ++ +LH ++IR EQV+ + +I +K L+D KL++++ ++I L LM + P L + LK+K SRVREE++N+ I +LL++PS +F+L L D+A L+D+++RVR A+LE FA+LA +G G S L AVD +E ++ N +G++ AVQ+RL RK LP++ E V+YAV +P+S +S D W+++G S S C RR+LSA G+NKLPW+ Q
Sbjct: 195 LRKDALQILHICLKRSP--GEVLRTLIQQGLESTDARLRASTALLLPILLTTEDLLLGLD-LTEVIISLARKLGDQETEEESETAFSALQQIGERLGQDRFQSYISRLPSALRRHYNRRLESQFGSQVPYYLELEASGFPEDPLPCAVTLSNSNLKFGIIPQELHSRLLDQEDYKNRTQAVEELKQVLGKFNPSSTPHSSLVGFISLLYN----LLDDSNFKVVHGTLEVLHLLVIRLGEQVQQFLGPVIAASVKVLADNKLVIKQEYMKIFLKLMKEVGPQQVLCLLLEHLKHKHSRVREEVVNICICSLLTYPSEDFDLPKLSFDLAPALVDSKRRVRQAALEAFAVLASSMGSGKTSILFKAVDTVELQD-NGDGVMNAVQARLARKTLPRLTEQGFVEYAVLMPSSAGGRSNHLAHGADTDWLLAGNRTQSAHCHCGDHVRDSMHIYGSYSPTICTRRVLSAGKGKNKLPWENEQ 665 HSP 2 Score: 96.6709 bits (239), Expect = 9.094e-20 Identity = 70/271 (25.83%), Postives = 125/271 (46.13%), Query Frame = 2
Query: 3683 KENLIETSPKPEANKTDLQNMKPFD----AVTAALRMLNSSPEEWESKIDGLDMTLELLKKEGDDI-CEGHAVVTAILNQVKNLRSQITRKALNCIGQAFVHAPRTCEPDLEAILKTVLPKAGDTNQFIKSDTEQAIELLVENVNPYKAMPALVSCGVAHLNGHVRKISSKALADISERIGYAKFCSQRGNLMAAAKLAQDQHPESRYHGRRIMLQLLEYPELMDTLRRQLKPANFKAVHDIIENLKLRGLEPA---SGSATLRRSMRGSA 4471
KE + + PE DL ++PF A+T ALR+L + E+WE KI+GL+ L + + + H A++ +VKNLRS ++R A+ C+ F + ++ + +L+ +K +L KAG++N FI+ D ++A+ +V NV P +A+ +L++ G RY+GR+++ ++ +P L + + + + D + NL+ +GL + SA RRS GS
Sbjct: 1231 KERMPSVTHSPEI--MDLSELRPFSKPEIALTEALRLL--ADEDWEKKIEGLNFIRCLAAFHSEILNTKLHETNFAVVQEVKNLRSGVSRAAVVCLSDLFTYLKKSMDQELDTTVKVLLHKAGESNTFIREDVDKALRAMVNNVTPARAVVSLINGG------------------------------------------------QRYYGRKMLFFMMCHPNFEKMLEKYVPSKDLPYIKDSVRNLQQKGLGEIPLDTPSAKGRRSHTGSV 1449 The following BLAST results are available for this feature:
BLAST of TCONS_00004509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.