TCONS_00005001 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005001
Unique Name	TCONS_00005001
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2960

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000050:469602..477751+
coding sequence from alignment at sc0000050:469602..477751+

transcript sequence

>TCONS_00005001 ID=TCONS_00005001|Name=TCONS_00005001|organism=Clytia hemisphaerica|type=transcript|length=2960bp
TGGGATAGGACTAAGTTGTTAATATTTTGAGCGATAGgaggaaaaaaagg
aaaagtttGATATTTTAGAAGAAGTGTAACTAGCGGCAAAAAAGGATAAA
ATGCTTCACAATAATCAAGTTCTTTTGGTTTTTATGGGCCTTTGTTTTTT
CTGGTTTGTGAATTGTAACAGGCCAAAGTTAAACTCAACCACTAAAGAga
caaaggaagaaaaaatagaccgagaagaaatatttttggctcaaaatttt
GATCACTTGCTCAATcaatatgataaaaatattcGACCAAATTACACAGG
GAAACCAATCGTGGTGACAGTGGATTTGACTGTTATGGCGTTCGGTGCAA
TCAATGAGAGAGGAATGACATTTGCCACTGATTTATATTTCCGACAAACC
TGGCAAGACTATCGTTTACAGCATAAAGCCGGGACCGTATTAACGCCCTT
ATTAGGGCGGAAAATACCGACTGATTTCATATGGACACCAGATACGGTGA
TTTCAAATTCAGTCAAAACACGCAAACATAAAGTGACGACCAACAATGAG
AAATTGGATATTTACCCAAATGGAACAGTGTTTTGGGGAAGCAGAATCAC
CGTGATATCGAAATGCAAAATGGATTTTCGGAATTACCCGATGGATATCC
AAAGCTGTTCTTTGGTCATCAATAGTTATGCATACTTGAAAGAACATTTG
GAATACAAATGGAAACAAGACAAGGTTAGCATACAGTCAGAAGAAATGGC
TCAATATACTGTCAAAAGTGCATACAACCTCAGAAGAAATGCTAACTTCT
CAGATTTAGGCACGTTTTCAGAATTGGTGGTAACATTTACATTTGCTCGA
CAGATTTCAGTGACCATCATCCAGTTGTTTTTCCCAGCCACCGCTATTGT
GTCGGTATCGTGGGTTTCACTGTGGATTCACAAGAACTGTGTCTCTGCTA
GAGTCGCATTATGCGTAACAACGATGCTAACAATCTGTGCTTTCTGGGGC
TCAGTGAATCGTCAGCTGCCACGTGTCAATTATCCAAAAGCTGTTGACTA
CTATTTCATAGTATCGTTCCTATTCATTATGTTAACTCTGGTCGAATTCA
ccattgttttgaattttgattttgattctcTGAAAACGAAATCGGTGAAA
AAGCAATCTGGTAAAGACACATTGAAACGAGAAAATAGTTTACGAAATCA
GTTACCGAAGCACACTCACCATGTATTACGCCGAAAGATCAGCCGTTTGG
ATGCAAATGTCTTACAAGGAGATCTAGTCTGTGAAATAGACAACACAGGG
CGAACAGTACATTACTCATTGGCCAAAAAGGAGCAATGGAAAAAACCAAA
agttgataaaaacaaaatgcCGTATTTCTTTAAATATTATCCGGTGACAG
GGAAGCCGGCGACTTTGGATGTGATCGCCAGGTTCTTATTCccctttgtt
tatttttgttttaatgtgattttttggaaaacatacAGTTTGTAAAAGAT
TGACATTTCAATATTCTTCAATGTACTTCGACAAAGAGTTGTATTACAAA
TTCGAGCTGTATCAAAAGTTTGTCAATTTCGACGAATTGGAAAGGTAATC
GAATTATGAAGTGGAGGCGTTCAAAGCTGAGTATGCTAACGACATAAAGA
AATTACTATGTAAAACTGACAATAAAATCCATGCAGTTGGAAAGATAACA
TGAAAACACTAACATTCATAACACTTTAATATGGATAACATTATTTAGCT
GGATTAGTAAAGAAGTATACTTTAAATGACATCCcgcccttctcacagac
ccagtgagATTTTTTCACCCAACGGGGGTAAAAATagcggaccaaaactc
gatgggggttAATATTCCCATTTTGCTCatgactggggatttgaattcca
ttgttttctaccaagaaaattcagtagggatggaaaaaatggcaCAAAAA
CTTGCAGTGAGGACAAGAATGagagtaaaattttccacctGGGACAATGT
TTTGACAAATTGTTTTAAATGACATCCCAATTTTGCGTGTCACTGTTTGA
CAAGTTTACGATCTTTGTTCAAACACAGTAATCAAATATTGTTGTAAGAC
TGTAACACAAGTTCAAGTTTAAGCGTGAAGGgaacaatccgtgccataat
atatttgcacttttggctaattaaccatttttcgaaaattgaagttcgag
cgagaatgtcaatttttggcCCTcgacttgatttcatcgattattacgAT
CTAgcagggatttattggtttctaggctatatttcaagcgctactggacc
atttttgaacttttggatcctcagatcctaaggtgtTAAGTCtaaagtct
catgttaaaactcagagttaaaactctacccttacaacctactttagagc
acttacaaatcgattgtggtttcaaaacaccccggtgaatttcccttttg
tgccaagtattttgtcactgattgaaGAAAAATGTCTTTAAAGGAAAATA
AAGCAACTTTTTCACAACCCAAATACGCATGACCCGTGCGGTTTTCACAC
AAAAGTCGGATTGGAAGTAGACTCTATCCCtggatttcaaaatattctcc
CCTCTAAAATATAGAAAGCGCTAAATTCTATCCCTCGTCTCATAAAGCGG
CGCAAATCTTAAGGCGTCACTTTTCCTTGATTCGGAAAATATCGAATAAG
ATTCAGGTCTATccctttcgggctttaaactcaatggtcaaATATCAGAA
CAAAGCAATGTTACTAGACTATGCGCTATAGTCTAGGACGAATtcgaata
ataaaaaaataacctCAAACACGGAAATTAGCAGTCGGgcggaaattttg
tccacgcgggCGAAAATAGTTGGAGAGTCTCTATTTTCCGCCGCGCAATT
TATTACGTTTTATACGCCGCGCAAtttattacgttttataatatacaact
aTTTTATAtc

Run BLAST on NCBI

protein sequence of TCONS_00005001-protein

>TCONS_00005001-protein ID=TCONS_00005001-protein|Name=TCONS_00005001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MLHNNQVLLVFMGLCFFWFVNCNRPKLNSTTKETKEEKIDREEIFLAQNF
DHLLNQYDKNIRPNYTGKPIVVTVDLTVMAFGAINERGMTFATDLYFRQT
WQDYRLQHKAGTVLTPLLGRKIPTDFIWTPDTVISNSVKTRKHKVTTNNE
KLDIYPNGTVFWGSRITVISKCKMDFRNYPMDIQSCSLVINSYAYLKEHL
EYKWKQDKVSIQSEEMAQYTVKSAYNLRRNANFSDLGTFSELVVTFTFAR
QISVTIIQLFFPATAIVSVSWVSLWIHKNCVSARVALCVTTMLTICAFWG
SVNRQLPRVNYPKAVDYYFIVSFLFIMLTLVEFTIVLNFDFDSLKTKSVK
KQSGKDTLKRENSLRNQLPKHTHHVLRRKISRLDANVLQGDLVCEIDNTG
RTVHYSLAKKEQWKKPKVDKNKMPYFFKYYPVTGKPATLDVIARFLFPFV
YFCFNVIFWKTYSL

Run BLAST on NCBI

transcript from alignment at sc0000050:469602..477751+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005001 ID=TCONS_00005001|Name=TCONS_00005001|organism=Clytia hemisphaerica|type=transcript|length=8150bp|location=Sequence derived from alignment at sc0000050:469602..477751+ (Clytia hemisphaerica)
TGGGATAGGACTAAGTTGTTAATATTTTGAGCGATAGgaggaaaaaaagg
aaaagtttGATATTTTAGAAGAAGTGTAACTAGCGGCAAAAAAGGATAAA
ATGCTTCACAATAATCAAGTTCTTTTGGTTTTTATGGGCCTTTGTTTTTT
CTGGTTTGTGAATTGTAACAGGTATGTCTTAAGAATACATCCCCTTCTCA
GGGACCCGACAGGATTTTTTCAGCTAGTGGGAGTAAAAATAACGGAATGG
AACTCgattgggattgatattcccatatttttatatccattgttttcaat
tcagaaaattcagtggggatgggaaaaataatataatatttaGCAGTGAG
AATATAATGGGACAAAAATTTTAGCATAATTTTCAAcgggggacaatatt
ttggccaattttttcagtgggaagggatcccagtggatctgtgagaaggg
ggtgttataaaAGTTTCAATCAGTTCTACCAGGGATAGATTTTTGTTTAA
TCTTTCCATCTTGAGATGGGATgcaataaaagagaaaaatattttgaatc
gTTACATATAGAAAGTAGGCCTTGGAGGGTAGCCCACTCGAGTGataaaa
aacaactaaaaacgggttttttgacTCCAACGCTACTTTCTAtaggctat
aacttttgatgcaagGAAAAAAGACTGTATagcacacccctgtgtcacag
acccgctgggacctcagccccactggaaattcAATGcttaaaattgcact
ccaaaaccatccccactagatttttaaccttggaacaatataatttctat
ccccattgagattttaaaaggagtttttatcccaactgaggaaaaaaatt
ttcccggggctgtgagacaggggtgttagtAGGCTTCAGAGTATCTCTGT
GCCAAAATGTTTCTAGCACTAACGGATAtgtattctttttcttcttcttt
tttcatcttcaaaatcttcttagtcatatttttctcaaaaattatagtgc
tcttaattatctttttaacggtGTACAAATGTTACAACTGAAGCATTCGT
TGATAAATAACAGGCAAAACAAAAGTTAGTGTGAATGGATTTtagaatat
atatatttttcaaaattatgttTCAGGCCAAAGTTAAACTCAACCACTAA
AGAgacaaaggaagaaaaaatagaccgagaagaaatatttttggctcaaa
attttGATCACTTGCTCAATcaatatgataaaaatattcGACCAAATTAC
ACAGGTAATTTTAGAttgtatattataaaattgatcaaattattCCTCAG
GNAAATATTCGACCAAATTATACAGGTAATTTTAGAttgtatattataaa
attggtcaaattattcCTCAGGGAGCAAGGGAGATTGCTTTCgatttagg
ggggggggaggtCCCCTTTTTCAGACCAGAATTATCTATCGGCATTTGTA
AATTTTCTATTCTGTTGTATTTCAACGGGTAAAATTCCAAATTTCGAATA
CATTACCTATATTCAAGGcagtttaaatttcatttttccaaatatcATGG
CCAGGATTGTAGAGCTTTTAgaagaaatagagaaaaattgaTCACGAGCA
CATCTGAGATCTCTACATAGTAGAATATTtgtatgtttttgtttgttaCT
AGGGAAACCAATCGTGGTGACAGTGGATTTGACTGTTATGGCGTTCGGTG
CAATCAATGAGAGAGGAATGGTATTCTCacgtttgaatgtttttttataa
gaatcaataaactttgaaatatagccgaaaattgttcttatttttagaat
ACTTAAATGAGATAAATTTTCGCAGGAATCATATTTcacggttgagctca
tccgcgaaatttcaaGATTAATTTTGCGAATGGCACTGTagaattttgag
cttttttacGCCAAATTATGAATGTTGGTTGTCGAAATACCCATCAtaag
cgcttctttgatgccagtagacattattttaaaatttttttgagtttttc
tcaaaaattactTTGCAAATAAGACCTGATTTCCATTGGGATTTAATTCT
GCGAGATCCCGCGAGATTtgatccccgcgaaagtttatcccatcaaaata
ttctaaaaataatATGCTTAATTGATAACGAAGGACTTTTTATAACCCAT
CAGCGTAATAAATATTCCATAATAATCAGATAATAGAATCAGATAACAGC
AGGTGACCTTGTTGCCGAGAGGGGGTTTAGTCGCGAGAATTAAGGAGTTG
GTCCTACGATACTGttgcaaaagtcaaaaacaaatTACGAGTGGTGTTTA
TATTAGAGACTTTCTTATTTTTGTATCAAAACTACTTTTAGACATTTGCC
ACTGATTTATATTTCCGACAAACCTGGCAAGACTATCGTTTACAGCATAA
AGCCGGGACCGTATTAACGCCCTTATTAGGGCGGAAAATACCGACTGATT
TCATATGGACACCAGATACGGTGATTTCAAATTCAGTCAAAACACGCAAA
CATAAAGTGACGACCAACAATGAGAAATTGGATATTTACCCAAATGGAAC
AGTGTTTTGGGGAAGCAGGTATTATATTGCTATACTATCAATTCAACATT
TGAGGATGGGGTTAGTAAAATTAGTTGATGTTAGACCTTAATCGATTTGT
CAATTTAAACAGCTTGAAAATGCAATTGCTGCTTCCCCCGCCTTAATCCT
TCCaatcaaatgtttttcattgatGTCACGAGGGAATTTACAATACGGAA
GGTCATTTATCAAGGCTTTCTTATTTCTAGAATCACCGTGATATCGAAAT
GCAAAATGGATTTTCGGAATTACCCGATGGATATCCAAAGCTGTTCTTTG
GTCATCAATAGTTGTAAGTTCCTCCTATATCACCATGTGATGTATATTTA
CTTGTGATCGTTAAAAGGCTTTTCTCGGAGAGATCACCCTCCAACAACTT
TGCTTCGAAAGACATAGCATAAAGCTTGACACAAGTTTAAGAAATCAATC
AACTCAAAACACTAGTGTCGCTCATTTTATCGTTCGTTTAATTCCAAGGG
AAGGGGAATAGCTCCATTTCCTCACATCCACGAATggttttcatttcttt
tgaaaatatccGTTTAGAATTTTCGTTTAATTTCTCTGAGTTATTGCTGA
AAACAGGATTAAAGTGCAATAACTTAGTGGGTCCTTAATGGGCCCCAGCG
AGCTATTTTGAGTCGTGGGGGCCaatattttggagaaaaaaatatcGTCC
ACCATGTTTGGGCGAGGAGGAAAATTTTTCAcgttttacaccctcaaaac
accttaaaaagTTATCTaaattggggagaataatagtttttatggcttaa
aatagtaactttaaaaaaagtatgGCATGGTCTGCAAGAGGGGTTAATAT
CTATTCTTCAGATAATTTGCCAGATTTCAGTCTCACGTTATAAAATTACC
TTCTTTAGATGCATACTTGAAAGAACATTTGGAATACAAATGGAAACAAG
ACAAGGTTAGCATACAGTCAGAAGAAATGGCTCAATATACTGTCAAAAGT
GCATACAACCTCAGAAGAAATGCTAACTTCTCAGATTTAGGTATATTCAT
TTCTACACCATTCAGTGTCGCAGCTacagaaacaaaacaaaagcaaattt
CCCCTTTTCCCCCATTTTCAATGTTCAATGAACGATGGGTTGGCGGTGCA
CACTGAACATTGCAATGGGGTAAGGGGGTCTGTTTTCTACAATCTTACTG
CAATTTGCTATGTCTTAAACATTCTTTCCCATGATTGGGGGGGGGGGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggaaaacggtatttc
gaacccctacaaacccccatGATTTGATTGTATAGTTGTATTTCTTGTTA
TGAGAGCGTCAAATATGTATCGTTGAAGTCCTCGCGTGGGATAGGTTTTA
AGGCTAGAATAATATGCTTTTATTTTCATCCTTGAATTTTTTCGTGTgta
tttcatttatatttcatcCTTTTAGGCACGTTTTCAGAATTGGTGGTAAC
ATTTACATTTGCTCGACAGATTTCAGTGACCATCATCCAGTTGTTTTTCC
CAGCCACCGCTATTGTGTCGGTATCGTGGGTTTCACTGTGGATTCACAAG
AACTGTGTCTCTGCTAGAGTCGGTAGGttgaaatctttatttttatctta
tCGGCGGTCGGTCCCTATCAGGTTATCTATGTAACAGATTCAAAAATCTc
tagggaaatttcaaactctttgCTGTCATAAGTCGAAACAGATATAAACA
GAGTCATAAACAGATATAAAATATAAACCTCTGAAGTACTCTGGCACAGA
CTACTTATATGTTCACTGCTAAATCTTGAGCCTTTTTAACTACTAGACCA
ACAaataaaacagacaaaaattaaaatcgaGTCAAATTCAAACTTGTTTA
AAACGTATTTGGAGGTTTCATAgttgatattgtcgatttactctgacaaa
aatgcaatttttcagaACCTATTTTCAGGGTGAacatctttttttcattt
tcttaacgAATTATTagtaaatatttattttgcaGAACTAATTCTCAATG
TATGCACCGAATTCTGTAACTTTAGATTTTTCCTACGAAAATTAGTTAGT
GCATTCAAAAGGTGTCGCTTTTGATAGAAATGCCACCAGACTGAAAGCCA
TTAACGAAAAGAAAGATATATATCGAGGTATCGTTTTCATGACTCGAAGC
TCTATAACAAGTTGTCCCTTCGCAGTTCACAATGCTTTacaaaccttact
ccataactcgaacaaattttgtgttctccgtgcgtgttcgagttattgag
ACTCCATTGTATTTGGGTCTTGATCAGATGAAAGCTAGGCTCGTTTCGGg
tgtaaaactcctactcttcgggatatgcgcactgctcttgttttgaatat
tgaattgcTTCGGatacatcgcatgcgcactgaggttttgatgaaacaat
agagagtttcgaaagcTACCCCACTAAAAAGTGAAtccccggtgggggtc
actagtggccgcccaTAGCACAGCAGTGTCTATAGACCAAAAGTAAGGAT
TAAAAAAGCCtagagctgtctattgtgtagactaatgAAAACAACTCTTA
CCATTTGTCTAATTCTTTTTTTCCCAGCATTATGCGTAACAACGATGCTA
ACAATCTGTGCTTTCTGGGGCTCAGTGAATCGTCAGCTGCCACGTGTCAA
TTATCCAAAAGCTGTTGACTACTATTTCATAGTATCGTTCCTATTCATTA
TGTTAACTCTGGTCGAATTCAccattgttttgaattttgattttgattct
cTGAAAACGAAATCGGTGAAAAAGCAATCTGGTAAAGACACATTGAAACG
AGAAAATAGTTTACGAAATCAGTTACCGGTATGTATCTaccattttcata
ttttgaaaagttttcattaCTTGTCTATTGCGGAAAAAGTTTTTACCCTC
GTGTTGAAAAGGTGCTCTTTGGAAAGACAGCCCCCTTGGTCTTTACAGTG
GGCAAATATTTATGGTAGCCAACTTGGATTAAAATTTCATAGACCAGACC
CTTCCGTAAATTGGTCTATTCATCCCTCATGTAATTCCGACAACCTTCAT
AAAGTAAGATTTAGAAAGGCCGGAATCACTTATTGAAAAAAGAGAAACCT
TTTCCCCGACTCTTTATTAGCTATCAGCAATTCCGATCTTTTATTATTCC
CAGGTTTAAAGAAGGATATCGGAATCCTCCAAGAAAGGATTGTGAAGTGA
TTATCTCCCATTAGAACTTTAGATCAATCATAATTTGATGAAAAGAAGGA
TTCTGAAATTTCTTTTCGAAAGTGATGAGGAAGGACTTTCTCGTGACGCA
ATTAAACAAAAAGCCTATCAAGGAAAGAAAAGCCTCGCCTGCCCAACATA
ACAAtgcaaaatacaccttttcgtcCGTAGCTGCCAATTGCTGCACGGga
attttttgtccgttttaccaccctaaaattGTTCCAGTCCTTTTTTTGCA
CTTAAAGACAATAgacaaaagtgtaaaaaaggattggatcgataGTTGac
ggtggtaaattaaataataaagtagcacgcgcctgaccgcgcgattacgg
tcgaaaaggtgtatagaaAGTAACTTTAATTTAATTTCTTATTTCAGAAG
CACACTCACCATGTATTACGCCGAAAGATCAGCCGTTTGGATGCAAATGT
CTTACAAGGAGATCTAGTCTGTGAAATAGACAACACAGGGCGAACAGTAC
ATTACTCATTGGCCAAAAAGGAGCAATGGAAAAAACCAAAagttgataaa
aacaaaatgcCGTATTTCTTTAAATATTATCCGGTGACAGGGAAGCCGGC
GACTTTGGATGTGATCGCCAGGTTCTTATTCccctttgtttatttttgtt
ttaatgtgattttttggaaaacatacAGTTTGTAAAAGATTGACATTTCA
ATATTCTTCAATGTACTTCGACAAAGAGTTGTATTACAAATTCGAGCTGT
ATCAAAAGTTTGTCAATTTCGACGAATTGGAAAGGTAATCGAATTATGAA
GTGGAGGCGTTCAAAGCTGAGTATGCTAACGACATAAAGAAATTACTATG
TAAAACTGACAATAAAATCCATGCAGTTGGAAAGATAACATGAAAACACT
AACATTCATAACACTTTAATATGGATAACATTATTTAGCTGGATTAGTAA
AGAAGTATACTTTAAATGACATCCcgcccttctcacagacccagtgagAT
TTTTTCACCCAACGGGGGTAAAAATagcggaccaaaactcgatgggggtt
AATATTCCCATTTTGCTCatgactggggatttgaattccattgttttcta
ccaagaaaattcagtagggatggaaaaaatggcaCAAAAACTTGCAGTGA
GGACAAGAATGagagtaaaattttccacctGGGACAATGTTTTGACAAAT
TGTTTTAAATGACATCCCAATTTTGCGTGTCACTGTTTGACAAGTTTACG
ATCTTTGTTCAAACACAGTAATCAAATATTGTTGTAAGACTGTAACACAA
GTTCAAGTTTAAGCGTGAAGGgaacaatccgtgccataatatatttgcac
ttttggctaattaaccatttttcgaaaattgaagttcgagcgagaatgtc
aatttttggcCCTcgacttgatttcatcgattattacgATCTAgcaggga
tttattggtttctaggctatatttcaagcgctactggaccatttttgaac
ttttggatcctcagatcctaaggtgtTAAGTCtaaagtctcatgttaaaa
ctcagagttaaaactctacccttacaacctactttagagcacttacaaat
cgattgtggtttcaaaacaccccggtgaatttcccttttgtgccaagtat
tttgtcactgattgaaGAAAAATGTCTTTAAAGGAAAATAAAGCAACTTT
TTCACAACCCAAATACGCATGACCCGTGCGGTTTTCACACAAAAGTCGGA
TTGGAAGTAGACTCTATCCCtggatttcaaaatattctccCCTCTAAAAT
ATAGAAAGCGCTAAATTCTATCCCTCGTCTCATAAAGCGGCGCAAATCTT
AAGGCGTCACTTTTCCTTGATTCGGAAAATATCGAATAAGATTCAGGTCT
ATccctttcgggctttaaactcaatggtcaaATATCAGAACAAAGCAATG
TTACTAGACTATGCGCTATAGTCTAGGACGAATtcgaataataaaaaaat
aacctCAAACACGGAAATTAGCAGTCGGgcggaaattttgtccacgcggg
CGAAAATAGTTGGAGAGTCTCTATTTTCCGCCGCGCAATTTATTACGTTT
TATACGCCGCGCAAtttattacgttttataatatacaactaTTTTATAtc

Coding sequence (CDS) from alignment at sc0000050:469602..477751+

>TCONS_00005001 ID=TCONS_00005001|Name=TCONS_00005001|organism=Clytia hemisphaerica|type=CDS|length=1395bp|location=Sequence derived from alignment at sc0000050:469602..477751+ (Clytia hemisphaerica)
ATGCTTCACAATAATCAAGTTCTTTTGGTTTTTATGGGCCTTTGTTTTTT
CTGGTTTGTGAATTGTAACAGGCCAAAGTTAAACTCAACCACTAAAGAga
caaaggaagaaaaaatagaccgagaagaaatatttttggctcaaaatttt
GATCACTTGCTCAATcaatatgataaaaatattcGACCAAATTACACAGG
GAAACCAATCGTGGTGACAGTGGATTTGACTGTTATGGCGTTCGGTGCAA
TCAATGAGAGAGGAATGACATTTGCCACTGATTTATATTTCCGACAAACC
TGGCAAGACTATCGTTTACAGCATAAAGCCGGGACCGTATTAACGCCCTT
ATTAGGGCGGAAAATACCGACTGATTTCATATGGACACCAGATACGGTGA
TTTCAAATTCAGTCAAAACACGCAAACATAAAGTGACGACCAACAATGAG
AAATTGGATATTTACCCAAATGGAACAGTGTTTTGGGGAAGCAGAATCAC
CGTGATATCGAAATGCAAAATGGATTTTCGGAATTACCCGATGGATATCC
AAAGCTGTTCTTTGGTCATCAATAGTTATGCATACTTGAAAGAACATTTG
GAATACAAATGGAAACAAGACAAGGTTAGCATACAGTCAGAAGAAATGGC
TCAATATACTGTCAAAAGTGCATACAACCTCAGAAGAAATGCTAACTTCT
CAGATTTAGGCACGTTTTCAGAATTGGTGGTAACATTTACATTTGCTCGA
CAGATTTCAGTGACCATCATCCAGTTGTTTTTCCCAGCCACCGCTATTGT
GTCGGTATCGTGGGTTTCACTGTGGATTCACAAGAACTGTGTCTCTGCTA
GAGTCGCATTATGCGTAACAACGATGCTAACAATCTGTGCTTTCTGGGGC
TCAGTGAATCGTCAGCTGCCACGTGTCAATTATCCAAAAGCTGTTGACTA
CTATTTCATAGTATCGTTCCTATTCATTATGTTAACTCTGGTCGAATTCA
ccattgttttgaattttgattttgattctcTGAAAACGAAATCGGTGAAA
AAGCAATCTGGTAAAGACACATTGAAACGAGAAAATAGTTTACGAAATCA
GTTACCGAAGCACACTCACCATGTATTACGCCGAAAGATCAGCCGTTTGG
ATGCAAATGTCTTACAAGGAGATCTAGTCTGTGAAATAGACAACACAGGG
CGAACAGTACATTACTCATTGGCCAAAAAGGAGCAATGGAAAAAACCAAA
agttgataaaaacaaaatgcCGTATTTCTTTAAATATTATCCGGTGACAG
GGAAGCCGGCGACTTTGGATGTGATCGCCAGGTTCTTATTCccctttgtt
tatttttgttttaatgtgattttttggaaaacatacAGTTTGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002835	XLOC_002835	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00005001-protein	TCONS_00005001-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000050	supercontig	sc0000050:469602..477751 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0657	0	0	0	0.331725	0.692157	0.235536	0	0	0	2.92967	2.81669	0.97415	0.62892	0.356388	0.495903	3.45203	4.31253	0.963155	0.905499	0.231104	0.337878	0.831074	1.08628	0.459281	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR006028	GABAA/Glycine_rcpt
IPR006201	Neur_channel
IPR006202	Neur_chan_lig-bd
IPR006029	Neurotrans-gated_channel_TM
IPR018000	Neurotransmitter_ion_chnl_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006811	ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity
GO:0005230	extracellular ligand-gated ion channel activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005230	extracellular ligand-gated ion channel activity
molecular_function	GO:0005216	ion channel activity

Blast

[Close]

BLAST of TCONS_00005001 vs. Swiss-Prot (Human)
Match: GBRR1 (Gamma-aminobutyric acid receptor subunit rho-1 OS=Homo sapiens GN=GABRR1 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 1.877e-62
Identity = 139/423 (32.86%), Postives = 221/423 (52.25%), Query Frame = 2

Query:  260 LNQYDKNIRPNYTGKPIVVTVDLTVMAFGAINERGMTFATDLYFRQTWQDYRLQHKAGTVLTPLL-GRKIPTDFIWTPDTVISNSVKTRKHKVTTNNEKLDIYPNGTVFWGSRITVISKCKMDFRNYPMDIQSCSLVINSYAYLKEHLEYKWKQDKVSIQSEE---MAQYTVKSAYNLRRNANFSDLGTFSELVVTFTFARQISVTIIQLFFPATAIVSVSWVSLWIHKNCVSARVALCVTTMLTICAFWGSVNRQLPRVNYPKAVDYYFIVSFLFIMLTLVEFTIVLNFDFDSLKTKSVKKQSGKDTLKRENSLRNQLPKHTHHVLRRKISRLDANVLQGDLVCEIDN----TGR-----TVHYSLAKKEQWKKPKVDKNKMPYFFKYYPVTGKPATLDVIARFLFPFVYFCFNVIFWKTYS 1489
            ++ +D ++RP + G  I V VD+ V +  +I+E  M F   LY R  W+D RL   +   L+    GR +    IW PD    +S ++  H  TT+N  L + P+G V +  R+TV + C MDF  +P+D Q+CSL I SYAY ++ L   WK+   S++++E   ++Q+ ++  +   + A +S  G ++ L + FT  R I   ++Q +FPAT +V +SWVS WI +  V ARV L +TT+LT+      VN  +PRV+Y KAVD Y  VSF+F+ L+++E+  V     + L T   +K         E  LR +LP  T  +   + + LD N   G+ V ++DN     G       V  +LA +    + K  ++       Y  +      +D  +R +FP  Y  FN+I+W  +S
Sbjct:   81 IDDHDFSMRPGFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFPSTNNLSMTFDGRLVKK--IWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCNMDFSRFPLDTQTCSLEIESYAYTEDDLMLYWKKGNDSLKTDERISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAV-----NYLTTVQERK---------EQKLREKLP-CTSGLPPPRTAMLDGNYSDGE-VNDLDNYMPENGEKPDRMMVQLTLASERSSPQRKSQRS------SYVSMRIDTHAIDKYSRIIFPAAYILFNLIYWSIFS 479

The following BLAST results are available for this feature:

BLAST of TCONS_00005001 vs. Swiss-Prot (Human)

BLAST of TCONS_00005001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GBRR1	1.877e-62	32.86	Gamma-aminobutyric acid receptor subunit rho-1 OS=...	[more]

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TCONS_00005001 (transcript) - C. hemisphaerica