TCONS_00005036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005036
Unique NameTCONS_00005036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005036 ID=TCONS_00005036|Name=TCONS_00005036|organism=Clytia hemisphaerica|type=transcript|length=2692bp
tttttatattaGCTTGAAAGCATGATTAAGATTGATGATAGTGTTTTGAG
AGAtctttttgatgttttgtttatattttcagtAGCAAAAAATGTGACTT
TTGAGCCAGGCACAAGAGCCGTTTAAATGTCTAGAAAAACACATGAAAGA
TTTTTGACTGGTTGATTCTTAATTTCTTGGCAACAAAATGATGGCTGTTG
AAAAACGAAGTGCTGTTGGAgatAAGGCAAAGGAAATTGAAGGCAAAGCC
AAGGAAATATGGTTACAAATCGAGACATTTTTCATCAATCTATGGAATTG
GTCTTTAAAACATAAAGAGATAGCTATCCCTGCTGCAGTTGGTATTTTAT
TGGTCCTGGTTTTGTTCTTCTCgtgttgttgttattgttgttgctGTCGC
AAGAAGACTcgtaagaaaataaaagaaaagttgaaaatgaaaGGAGTAAA
GCCGAGCAAAATGTTGAGACGTATACAACCAGGGAAAAGGGTCAAAAGAG
TCATGGAAGAAGTTGGCTCGATGACATTTCGCTTGAAATATAATCAATCG
ACTGAAATTTTGACAGTGAAGGTGATCGAATCAAATGATATACCGGTCCG
TGATTTGAGTGGTCACAGCTACTCATTCGTTGAAGTCAAACTCCTCCCAC
TACACAAGGATTCGCCCATTGAATATAAAACCGCCCTTGTACGCCCTGCA
ACATTCAATCCTTCATTCGGGGATGGGTTCACTTTTTGTATCCCTCAGAA
AGAGGCCAAACAACAGAAACTGTGTTTGACGCAATATGAAAAGAATCGTT
TCTCACAGAAGGATGGGATAGGTCAGATTGAAATGGATTTGAAATCGGTT
CTCACAACGAAAGAAGAAGAATATATCAAGAAATTGTATCCGTACGATCC
TCTCATAGGAGTGGAAAAGGAAACGGGAGCAGTTTACTTATCCATGGAAT
TAGATCGAGATATTTGGGAATTGAAGATCGAAATCGAAGAAGCAGACATT
CTGCCGGAAGACgaagataaagaaaaatgtaCATCTTATGTGACCTTAGC
CATACTGGATAAAGAAGGAAAAAGACTTGAGAAAAGAAAAACGAATACAT
GTCCAGGGACACTTCAACCTGAATTTGACGAAGTTATAACTTTCTCTGTA
CCTGATGGATCGTTACTAGATACACAGATATTAATCAAACTAAAGAGTAA
AAGGTTTTTATTACCGAGTAAATTGATAGGACAATTTATCATCACACCTG
AATCTGAGAGTTGGAAGAAACTTTTAGAAGACAATGCATTGAAAGCACGT
TGGTTTCAAATGTACCATAAGCCGAGCAGTTGATGGTTTGGAAGAGCTTA
GTAAAAAGAAGTTTGGAATAATGCTCTGGTTGTGTTTAACTGTGAGATAT
GGGATACCAGCCGTTCCCTTTCCCTATGTTCATCCTTCAATTTGAAGACA
TTTATTGACTCGTATCGGAGAAATATTAGGAAACCACATGTAGAAAATAA
TTTAAGAAGAACCTATTTCAGCCCTGGTCTAACGTCTCCAGTTATTAAAT
GGTATAATGTGAAGGGTATGAATCATTGGACTTTTGGGAAAAATATGAAA
TGTTTAGTTTTACCAGACGTCGTCATATTCtaccaaagtgatcaacgatt
AGTAGGCAGATATATTTCATTTCGTCGTTGATTCCAATTCATCTTCCAAT
GTTGGTTGTGGTTTATCCTATGATAAACGATGATGAATCTTTTAAGTTGC
CGGGTATCATCCCGGGGGGTACTTAGCCAAATGGAGGGtatggtatgtgc
cgcccttaagggcaccttttttggatttccaaatttcaaatttcagtccc
actaagggtgggactttttacccccggaaagatcgTCTTGTTATAGTAAC
TCACGTAGAGGGAACTAATCTTAGCgatttttcagttaaaaaagaacaaa
tttacCTTCCTGCCACTGGCCAAGGTTGGTTctcacaaaaatgtaaaaaa
agttGGATTTTTGCTGCTCGCCCAAATTAGTTTCCATAAAGTAACTTAAG
TAAGGAGTTGAGAAAGGGATCAGTCGCCCTTTTCCCCAAGGTGTAACTTT
AAGGCGTAAGTTGGATGAAATTAGGAGGAAAAACttggagagatttttta
gaaatatgtgttctttaTCTTCTAAGAGATCTCACATGTTATGACCTTCa
attttcttatacaaatgATTCGTATATGATGAGTGTTGATGAGTGTTCTG
ATTTCTAAGAAGCCTTTATCacactatttgtctccctaaactttttacta
ctttatagttggatgtgttctaaaatctaggaaataaattttgcaaagac
ataatatttgtttttttttagatatagatatttgttttttttccacaaaa
gatgtgttctgaaattttttagggttactaggcaacaagaacACATTTGA
cgaccttgattatacccctgtctcgtcagaaaaCATCATTATTTTTAGCT
TATTATTTTAAGAtcttatcagaacagatcaaaatttctagctgaaacgt
actctcagaacacatcggaaaaaaaggtcaCCTCGCCGACTCCTTTCGAA
TATCTaccttcttttgaaaaaaaaacaaaatattttagaaGTTCTCTGAC
CTTCCCTGACCTACCTACCTACCAAAATGAAGCAAAACCTCC
Run BLAST on NCBI

protein sequence of TCONS_00005036-protein

>TCONS_00005036-protein ID=TCONS_00005036-protein|Name=TCONS_00005036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp
MMAVEKRSAVGDKAKEIEGKAKEIWLQIETFFINLWNWSLKHKEIAIPAA
VGILLVLVLFFSCCCYCCCCRKKTRKKIKEKLKMKGVKPSKMLRRIQPGK
RVKRVMEEVGSMTFRLKYNQSTEILTVKVIESNDIPVRDLSGHSYSFVEV
KLLPLHKDSPIEYKTALVRPATFNPSFGDGFTFCIPQKEAKQQKLCLTQY
EKNRFSQKDGIGQIEMDLKSVLTTKEEEYIKKLYPYDPLIGVEKETGAVY
LSMELDRDIWELKIEIEEADILPEDEDKEKCTSYVTLAILDKEGKRLEKR
KTNTCPGTLQPEFDEVITFSVPDGSLLDTQILIKLKSKRFLLPSKLIGQF
IITPESESWKKLLEDNALKARWFQMYHKPSS
Run BLAST on NCBI

transcript from alignment at sc0000050:82991..91166-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005036 ID=TCONS_00005036|Name=TCONS_00005036|organism=Clytia hemisphaerica|type=transcript|length=8176bp|location=Sequence derived from alignment at sc0000050:82991..91166- (Clytia hemisphaerica)
TTTTTATATTAGCTTGAAAGCATGATTAAGATTGATGATAGTGTTTTGAG
AGATCTTTTTGATGTTTTGTTTATATTTTCAGTAGCAAAAAATGTGACTT
TTGAGCCAGGCACAAGAGCCGTTTAAATGTCTAGAAAAACACATGAAAGA
TTTTTGACTGGTTGATTCTTAATTTCTTGGCAACAAAATGATGGCTGTTG
AAAAACGAAGTGCTGTTGGAGGTTTGCTTTTGTTTTGTTTTTGTTTTGTT
AATCTACACAATTGACAGCTCCAGGCTTTTAGGCCTTACGAGATTTACGC
GGAAACGAATGGAAATATGGCGTAGCCTAACCTTTTGTTTCATATACACT
ATTTGACCCTGGTCAAATTACAGTACCAGATAAAACTGAACTTAGATAGT
ATTGATTTTTGTGTAGAATTTTAGGGTTCGTTTATTTCCAAGTTCATCCT
CTTATAAGACACAATGCTTTAAGATTACTACACTTTTTTATATAAGAACA
ATTTTATAAGAACAATGAGGCTCAAAATCGCCAAAAAATAAGAACAATTT
TAAGGACAATGCTGAGACTGAAATTNGCTTGATTCATCTCATCTACGGAA
CATCTCTCGATTGACTGATCTTTTTCTTATTTTGTTTCGCATTGCGTGAC
TTCGCCAATTGGACTGACTTGATTAATTTCTTCTCATTTATTTTCTCATG
TAGTTTTTTATAAAAAGACGTACCTTAAAGGGAGAAATTTTGGCGGGAAG
AACATTTGGCGGATTTGGTCAAAATCCGCCGAATTAAGTTCCCGCCAAAT
TTAAGTTGCTCTATTTATTCCCCCAAATGTNCCTCTATTACACCCTGTAA
ATAAGAACAGGTTAAGAATAATTTGAGGCTCAAAGTGCTAAAAAAATAAG
AACAGCCGAGCCTCAGGAAAATTTTACTGGTTCTTATAAAAAAGTGTATC
TTGGTATAAACTTTCATTGAGAAAATGATAGCTAGCTAGCACCAGGTTCT
TTATTACTCTTGTCTCCCGAATAGACGCCCCCCCCTCCCGCTAATTGTTG
AGAGAAAAAAAATCCATCCCCCCGCTCTTATTAAGACCCCCCCGCTAATC
AAATTCGAATAATTCAATATCTTATTACAGTGTAGATGGACCTTAAACTT
GTTAATATTTTCCTTTTTGTTAGTATTGGTTCTTATTTTACGTGTTTATT
TGCAGAAGTTTCTTTTTTGTTGTTGAAATTGATATCAGTTAAAAAAAATT
CAGTCTTCAAATTACCCCTCCCCTCTTATTCCATTCTTATATTGATTCTG
GTATCGTAAAGTTTTACTCAAGATACGTTGATGATACACTCCTTGTCATT
CGTCCAGTAGATATCGATAAAGTTCATTGCTCCCTTAACAAATTTGATAA
AAATCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTCGGGAG
ACAAGAGTACAATCCTGGACAAAACTGTGTGTCCACCCCCTCCCTCTCTC
AATATCAATGTCTCGGAGTCTTGTGAACGTGTGACAAATATTTAAATCCA
ATATTGATTTTTTTTTGGGGGGGGGGACTTTCCTGTGGGAAAGGGACACC
AGTATTGACCACGATTTCAGTTTGGTTTGTTGAAGCAAACACTAAGACTT
AATCACTGTAAGTCATGTTGTTTTGATAATTTTCAGATAAGGCAAAGGAA
ATTGAAGGCAAAGCCAAGGAAATATGGTTACAAATCGAGACATTTTTCAT
CAATCTATGGAATTGGTCTTTAAAACATAAAGAGATAGCTATCCCTGCTG
CAGTTGGTATTTTATTGGTCCTGGTTTTGTTCTTCTCGTGTTGTTGTTAT
TGTTGTTGCTGTCGCAAGAAGACTCGTAAGAAAATAAAAGAAAAGTTGAA
AATGAAAGGAGTAAAGCCGAGCAAAATGTTGAGACGTATACAACCAGGGA
AAAGGGTCAAAAGAGTCATGGTAATTGTTTGTTTTAGGCCTTTTATTCAT
TTATTGATTATAAATTTGTAAAAACAAAGTGATATACCTTATTACACAAA
TATTACTAGGCAAGTATTTAACGCTCTTGAAATTTGCACGATCTGAAATT
AACACGAATTGTTCTGATTTTTCAAGGAAACGGTGGCTGGTTTTAATTAA
GGGGATTTTTATTAGCACGAAATTTTTCAATTATATGACATAATAAAATG
ACTAGTAATATCCGTGTAATTAGATATGCGATATGCCTCGACGAAGACGG
ATTCATCATTTTCCAAAATGTTGGCCCCCAAGTGTTGGCCCCCTCACTCA
AAATGGCTCGCCGGGGCCCATGTTCATACATCTGATCTGCGACCCATGTA
TCCCCTGTTGTTAAAACGCTAGTTTGTACAAAGATTATTTCAAATTTTTC
AGAAAAAAAAAATTCGTCCTCTGTTGCCAAACTTTTTTTAATCCAAACAA
TTAATTATAACTAATTTTCAATTCGATTAAATCTTTCAGGAAGAAGTTGG
CTCGATGACATTTCGCTTGAAATATAATCAATCGACGTAAGTTCAATTCT
TGTTTAAAGATTCTCATATAAGCCATTGGGTCAGGCTTCCCTTGTTTTTA
ATTGCAACGATGCCATGGTAGATTCTAAATATTAACAACGCTTTGCTTTC
ACAAATTCTAAGGATAATACCAGCAATAAATCCTAGTAAAACAAAATTTC
CCGCATATCGTATTTCTCTTTCTCAGTGAAATTTTGACAGTGAAGGTGAT
CGAATCAAATGATATACCGGTCCGTGATTTGAGTGGTCACAGCTACTCAT
TCGTTGAAGTCAAACTCCTCCCACTACACAAGGATTCGCCCATTGAATAT
AAAACCGCCCTTGTACGCCCTGCAACATTCAATCCTTCATTCGGGGATGG
GTTCACTTTTTGTATCCCTCAGAAAGAGNATTTTTGGTTTACATTATGAA
AAGAAGATTCGGCCTTCAAGTATGTTAAAATTAATGAACCTTAGTGCTGA
GGAATCGTAGAACGTTTTTTCTCCTATGTAATTTTGAACGGGTTTAATAT
AAAGATGGCTCTTTCTTTAGATTTATTTTTGATATTTTCCTTTCATTTCA
GCATCTTATGTGACCTTAGCCATACTGGATAAAGAAGGAAAAAGACTTGA
GAAAAGAAAAACGAATACATGTCCAGGGACACTTCAACCTGAATTTGACG
AAGTTATAACTTTCTCTGTACCTGATGGATCGTTACTGGATACACAGATA
TTAATCAAACTAAAGAGTAAAAGGTTTTTATTACCGAGTAAATTGATAGG
ACAATTTATCATCACACCTGAATCTGAGAGTTGGAAGAAACTTTTAGAAG
ACAATGCANGACATTCAATCCTTCATTCGGGGATGGGTTCACTTTTTGTA
TCCCTCAGAAAGAGGCCAAACAACAGAAACTGTGTTTGACGCAATATGAA
AAGAATCGTTTCTCACAGAAGGATGGGATAGGTCAGATTGAAATGGATTT
GAAATCGGTTCTCACAACGAAAGAAGAAGAATATATCAAGAAATTGTATC
CGTACGATCCTCTCATAGGAGTGGTATGTAACTCAACTTTTTCCAATTCA
AATTTATCTTTCACGCTTGTTTTTTTAATATCACTGATACGTCATGGCTC
TGTTGTCTCGTGAGCACATGGTTAACGCTGTCTGGTATATGCTATGATTT
CCCTTATCCTAGAAAGGATAACTATTCTGGGTTAGTGCCCATTCCGTTCA
CATTGGAGAGATCATCTTTCCTGCCTTCCTACTTTCCTCCCCCTGAATAT
CCGTCGTAATTGGTCGAAAAACAACGTTTTAATTTCCTTTACTTCTAAAC
GCTGCCCTCAATTTTAACTGTCCCATCTAGAAGTATAAGATAAACACTTT
CGAAAGCACACACGTTTAGAATTTTTCATCGTTTTGTGTCTTTTAATGAT
GATCCAGGATAATCATGTTGTGCTTGCGTTGAAAGTTGTGTTAAGAATTA
CCGTCTCAAAATTCTAAAAATTTGGGAGAATTTGTCGTGAATTGATGTTT
TTAAGTTTTTCGGTCAATCTTTCAGGAAAAGGAAACGGGAGCAGTTTACT
TATCCATGGAATTAGATCGAGATATTTGGGAATTGAAGATCGAAATCGAA
GAAGCAGACATTCTGCCGGAAGACGAAGATAAAGAAAAATGTAGTAAGAT
TCTAAGTGTCTTTAGCTCGTTTAATTAATTTCACCTTGCTTGATTGATTA
ATTGTCTTTTGTAGAAATTTGCTTTAGTATTAACACCTTTGTCCCAGTTT
AATCACCTTGTAAATTACTCTTAGGTCCCAAATAAACGGGGGGGTGCTCA
AATAAACAGGGGTGTTGGAAAATTTTCGAGATTTTAAAAAACGGGGGGGG
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GGGGAGGACCTAGTAAGGTCCAGGGGGTTGGAAAATTTTCGGAAAATTAA
CAAGCGGGGAGGCCCGTTTATTTGGCACCTAAGAGTAAGGCTCATTTTTG
GTTTACATTATGAAAAGAAGATTCGGCCTTCAAGTATGTTAAAATTAATG
AACCTTAGTGCTGAGGAATCGTAGAACGTTTTTTCTCCTATGTAATTTTG
AACGGGTTTAATATAAAGATGGCTCTTTCTTTAGATTTATTTTTGATATT
TTCCTTTCATTTCAGCATCTTATGTGACCTTAGCCATACTGGATAAAGAA
GGAAAAAGACTTGAGAAAAGAAAAACGAATACATGTCCAGGGACACTTCA
ACCTGAATTTGACGAAGTTATAACTTTCTCTGTACCTGATGGATCGTTAC
TAGATACACAGATATTAATCAAACTAAAGAGTAAAAGGTTTTTATTACCG
AGTAAATTGATAGGACAATTTATCATCACACCTGAATCTGAGAGTTGGAA
GAAACTTTTAGAAGACAATGCATTGAAAGCACGTTGGTTTCAAATGTACC
ATAAGCCGAGCAGTTGATGGTTTGGAAGAGCTTAGTAAAAAGAAGTTTGG
AATAATGCTCTGGTTGTGTTTAACTGTGAGATATGGGATACCAGCCGTTC
CCTTTCCCTATGTTCATCCTTCAATTTGAAGACATTTATTGACTCGTATC
GGAGAAATATTAGGAAACCACATGTAGAAAATAATTTAAGAAGAACCTAT
TTCAGCCCTGGTCTAACGTCTCCAGTTATTAAATGGTATAATGTGAAGGG
TATGAATCATTGGACTTTTGGGAAAAATATGAAATGTTTAGTTTTACCAG
ACGTCGTCATATTCTACCAAAGTGATCAACGATTAGTAGGCAGATATATT
TCATTTCGTCGTTGATTCCAATTCATCTTCCAATGTTGGTTGTGGTTTAT
CCTATGATAAACGATGATGAATCTTTTAAGTTGCCGGGTATCATCCCGGG
GGGTACTTAGCCAAATGGAGGGTATGGTATGTGCCGCCCTTAAGGGCACC
TTTTTTGGATTTCCAAATTTCAAATTTCAGTCCCACTAAGGGTGGGACTT
TTTACCCCCGGAAAGATCGTCTTGTTATAGTAACTCACGTAGAGGGAACT
AATCTTAGCGATTTTTCAGTTAAAAAAGAACAAATTTACCTTCCTGCCAC
TGGCCAAGGTTGGTTCTCACAAAAATGTAAAAAAAGTTGGATTTTTGCTG
CTCGCCCAAATTAGTTTCCATAAAGTAACTTAAGTAAGGAGTTGAGAAAG
GGATCAGTCGCCCTTTTCCCCAAGGTGTAACTTTAAGGCGTAAGTTGGAT
GAAATTAGGAGGAAAAACTTGGAGAGATTTTTTAGAAATATGTGTTCTTT
ATCTTCTAAGAGATCTCACATGTTATGACCTTCAATTTTCTTATACAAAT
GATTCGTATATGATGAGTGTTGATGAGTGTTCTGATTTCTAAGAAGCCTT
TATCACACTATTTGTCTCCCTAAACTTTTTACTACTTTATAGTTGGATGT
GTTCTAAAATCTAGGAAATAAATTTTGCAAAGACATAATATTTGTTTTTT
TTTAGATATAGATATTTGTTTTTTTTCCACAAAAGATGTGTTCTGAAATT
TTTTAGGGTTACTAGGCAACAAGAACACATTTGACGACCTTGATTATACC
CCTGTCTCGTCAGAAAACATCATTATTTTTAGCTTATTATTTTAAGATCT
TATCAGAACAGATCAAAATTTCTAGCTGAAACGTACTCTCAGAACACATC
GGAAAAAAAGGTCACCTCGCCGACTCCTTTCGAATATCTACCTTCTTTTG
AAAAAAAAACAAAATATTTTAGAAGTTCTCTGACCTTCCCTGACCTACCT
ACCTACCAAAATGAAGCAAAACCTCC

Coding sequence (CDS) from alignment at sc0000050:82991..91166-

>TCONS_00005036 ID=TCONS_00005036|Name=TCONS_00005036|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at sc0000050:82991..91166- (Clytia hemisphaerica)
ATGATGGCTGTTGAAAAACGAAGTGCTGTTGGAGATAAGGCAAAGGAAAT
TGAAGGCAAAGCCAAGGAAATATGGTTACAAATCGAGACATTTTTCATCA
ATCTATGGAATTGGTCTTTAAAACATAAAGAGATAGCTATCCCTGCTGCA
GTTGGTATTTTATTGGTCCTGGTTTTGTTCTTCTCGTGTTGTTGTTATTG
TTGTTGCTGTCGCAAGAAGACTCGTAAGAAAATAAAAGAAAAGTTGAAAA
TGAAAGGAGTAAAGCCGAGCAAAATGTTGAGACGTATACAACCAGGGAAA
AGGGTCAAAAGAGTCATGGAAGAAGTTGGCTCGATGACATTTCGCTTGAA
ATATAATCAATCGACTGAAATTTTGACAGTGAAGGTGATCGAATCAAATG
ATATACCGGTCCGTGATTTGAGTGGTCACAGCTACTCATTCGTTGAAGTC
AAACTCCTCCCACTACACAAGGATTCGCCCATTGAATATAAAACCGCCCT
TGTACGCCCTGCAACATTCAATCCTTCATTCGGGGATGGGTTCACTTTTT
GTATCCCTCAGAAAGAGGCCAAACAACAGAAACTGTGTTTGACGCAATAT
GAAAAGAATCGTTTCTCACAGAAGGATGGGATAGGTCAGATTGAAATGGA
TTTGAAATCGGTTCTCACAACGAAAGAAGAAGAATATATCAAGAAATTGT
ATCCGTACGATCCTCTCATAGGAGTGGAAAAGGAAACGGGAGCAGTTTAC
TTATCCATGGAATTAGATCGAGATATTTGGGAATTGAAGATCGAAATCGA
AGAAGCAGACATTCTGCCGGAAGACGAAGATAAAGAAAAATGTACATCTT
ATGTGACCTTAGCCATACTGGATAAAGAAGGAAAAAGACTTGAGAAAAGA
AAAACGAATACATGTCCAGGGACACTTCAACCTGAATTTGACGAAGTTAT
AACTTTCTCTGTACCTGATGGATCGTTACTAGATACACAGATATTAATCA
AACTAAAGAGTAAAAGGTTTTTATTACCGAGTAAATTGATAGGACAATTT
ATCATCACACCTGAATCTGAGAGTTGGAAGAAACTTTTAGAAGACAATGC
ATTGAAAGCACGTTGGTTTCAAATGTACCATAAGCCGAGCAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002851XLOC_002851Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005036-proteinTCONS_00005036-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005036-exon-sc0000050-1575043694:90946..91166TCONS_00005036-exon-sc0000050-1575043694:90946..91166Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1575043694:89147..89430TCONS_00005036-exon-sc0000050-1575043694:89147..89430Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1575043694:88581..88627TCONS_00005036-exon-sc0000050-1575043694:88581..88627Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1575043694:88241..88390TCONS_00005036-exon-sc0000050-1575043694:88241..88390Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1575043694:87544..87754TCONS_00005036-exon-sc0000050-1575043694:87544..87754Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1575043694:86924..87041TCONS_00005036-exon-sc0000050-1575043694:86924..87041Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1575043694:82991..84651TCONS_00005036-exon-sc0000050-1575043694:82991..84651Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1510915933:90946..91166TCONS_00005036-exon-sc0000050-1510915933:90946..91166Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1510915933:89147..89430TCONS_00005036-exon-sc0000050-1510915933:89147..89430Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1510915933:88581..88627TCONS_00005036-exon-sc0000050-1510915933:88581..88627Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1510915933:88241..88390TCONS_00005036-exon-sc0000050-1510915933:88241..88390Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1510915933:87544..87754TCONS_00005036-exon-sc0000050-1510915933:87544..87754Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1510915933:86924..87041TCONS_00005036-exon-sc0000050-1510915933:86924..87041Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1510915933:82991..84651TCONS_00005036-exon-sc0000050-1510915933:82991..84651Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1491911889:90946..91166TCONS_00005036-exon-sc0000050-1491911889:90946..91166Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1491911889:89147..89430TCONS_00005036-exon-sc0000050-1491911889:89147..89430Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1491911889:88581..88627TCONS_00005036-exon-sc0000050-1491911889:88581..88627Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1491911889:88241..88390TCONS_00005036-exon-sc0000050-1491911889:88241..88390Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1491911889:87544..87754TCONS_00005036-exon-sc0000050-1491911889:87544..87754Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1491911889:86924..87041TCONS_00005036-exon-sc0000050-1491911889:86924..87041Clytia hemisphaericaexon
TCONS_00005036-exon-sc0000050-1491911889:82991..84651TCONS_00005036-exon-sc0000050-1491911889:82991..84651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:82991..91166 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.53652	7.96005	3.47978	3.58713	72.9687	53.8386	29.2722	31.4396	12.3953	15.6352	11.0471	11.3245	9.94285	9.51662	5.18416	4.13975	7.56574	9.3038	8.74187	8.56795	13.6412	12.878	13.5242	13.2175	9.91374	9.63304	4.58369	3.84837	6.01966	7.25547
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001565Synaptotagmin
IPR000008C2_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
[Close]
BLAST of TCONS_00005036 vs. Swiss-Prot (Human)
Match: SYT7 (Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.400e-20
Identity = 80/276 (28.99%), Postives = 136/276 (49.28%), Query Frame = 2 
Query:  506 EEVGSMTFRLKYNQSTEILTVKVIESNDIPVRDLSGHSYSFVEVKLLPLHKDSPIEYKTALVRPATFNPSFGDGFTF-CIPQKEAKQQKLCLTQYEKNRFSQKDGIGQIEMDLKSVLTTKEEEYIKKLYPYDPLIGVEKETGAVYLSMELDRDIWELKIEIEEADILPEDEDKEKCTSYVTLAILDKEGKRLEKRKTNTCPGTLQPEFDEVITFSVPDGSLLDTQILIKLKSKRFLLPSKLIGQFIIT-----PESESWKKLL-EDNALKARWFQM 1312
            E +G + F + YN     LTVK++++ ++P +D SG S  FV++ LLP  K   +E K   V+    NP + + F F   P ++  Q+ L L   + +RFS+ D IG++ + L  V  T+ + + K L P     G     G + LS+  +     + + I +A  L   +       YV + ++ K+ KR+EK+KT T    L P F+E   F +P   L +T I+I +  K  L  + +IG+  ++      E + WK ++       A+W Q+
Sbjct:  134 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLP-DKKHKLETK---VKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPCSDGSG---SRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKD-KRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQL 401
The following BLAST results are available for this feature:
BLAST of TCONS_00005036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYT71.400e-2028.99Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3[more]
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