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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005071 ID=TCONS_00005071|Name=TCONS_00005071|organism=Clytia hemisphaerica|type=transcript|length=1073bpRun BLAST on NCBI transcript from alignment at sc0000050:687433..710082- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005071 ID=TCONS_00005071|Name=TCONS_00005071|organism=Clytia hemisphaerica|type=transcript|length=22650bp|location=Sequence derived from alignment at sc0000050:687433..710082- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005071 vs. Swiss-Prot (Human)
Match: SF3B1 (Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3) HSP 1 Score: 191.045 bits (484), Expect = 5.187e-53 Identity = 149/355 (41.97%), Postives = 203/355 (57.18%), Query Frame = 3
Query: 78 DIDNQIKELQNLRGNKDDQETNNKGISFGTALEAELYGNGD-KYQGYDQSIATNDMEEEDDDFTSSTIGKAQ---SFTAHKSVLKEIEKEGHNVDPMAEHKIPTVGDRQNEYQQRMRKLLISPARADPFADGGKTPD--VRSRTYMDVLAEQRLVAEKAKVIKKIQDQHKNGEQPQAQSDA-----KKKRRRWDQTATEEAPAKKK----WDQAETPSNT---RWDETPGRQKQTGAETPGTVHGSE----TPG-TMRGEETPGRTPGATPSTRAWEATPSYIXXXXXXXXXXXXXXXXXQSTRRKRWDETPSQQATETPGRTPGWAETPKTDRIGSEXXXXXXXXXXXKKRSRW 1073
DI+ QI+E+Q + D E G+ + E+YG D ++ GY SIA ++E++DDD++SST Q + A ++L +I + DP AEH+ P + DR++EY++ R ++ISP R DPFADGGKTPD + +RTYMDV+ EQ L E+ ++ +++ ++ K GE A K++RRWDQTA + A K WDQAETP +T RWDETPGR K G+ETPG GS+ TP T G TPGR G TP ATP + G S R+ RWDETP + +TPG GWAETP+TDR G ++ G TPTPG K++SRW
Sbjct: 10 DIEAQIREIQGKKAALD--EAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK--GSETPGATPGSKIWDPTPSHTPAGAATPGR--GDTPG----HATPGH--------------GGATSSARKNRWDETPKTE-RDTPGHGSGWAETPRTDR-GGDSIGETPTPGASKRKSRW 338 The following BLAST results are available for this feature:
BLAST of TCONS_00005071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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