TCONS_00005072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005072
Unique NameTCONS_00005072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005072 ID=TCONS_00005072|Name=TCONS_00005072|organism=Clytia hemisphaerica|type=transcript|length=1358bp
taGGCGATTGAGGACGGCCGACTGTTTGTACTTCACATCCCTGAAATGGT
GGGCATTAAAAACGTACCCGACGTATTCGCACCGCTATTGCAAGATCGCA
AACTTGCTGACGNTGAGGACGGCCGACTGTTTGTACTTCACATCCCTGAA
ATGGTGGGCATTAAAAACGTACCCGACGTATTCGCACCGCTATTGCAAGA
TCGCAAACTTGCTGACGTCAAGTCACCGATATCGTTCTTTGTGTTGGGAG
ATGACGGACTTTTACACGTAGTTGCGATCCAAAGAAATCCTGTTCAAAca
TCCGAAGTTGATACATCAGAAAGTTCCAATTGGCTTTTAGCTAAAGGAGA
AGCTGAGATGGCCTCGGACCTTTATTGTCAAGCTAAAATACATCTCGGAG
AAGTCCATTTTGTGTCCACCATCTACTGTCTGTCCTTTAGACGTCATTTA
AGCACCAAGCACCCCCTATACGATTTCTTTAAGCACCATTGCGAAGGGAC
TGTCCCTCATATCACCACAGTCTTTGAGACTTTGACCACACCCAATGCTG
CGGGTAGTGTCATCTACGGAACCGGGAATCAAGGTTTTCTTGATTTGTCG
CAAAAAGCTTTTGCAGAACGAGATTATGAAAGCAACACTTATGAAGATTT
CATTGAGGGTAACGGTTTGGATGACGAGGACATTAAATATTACCCTTTCC
GTGACGACGTCAAAGTAATCATGAAAGAATACGAGATTTTCATCGATGAC
ATCATCAAGGCTTATTACAGAAGAGGAAGAATTCACAGGGACGCTGAATT
ACAATCATGGGCTAACGAGTTGTCGCCTGAAGGAACAGTTCAACCTGATG
CTGGGCGAGGAAAGATGAAAGGTTTTCCAGCAAAGTTCGAAACATGCGAT
CAGTTGAGGACGTTCTTGAAACGCTTTCTGTGGATTAACTTGTTCCACAC
TTCAGCAAATTATCCTGATTACAGAGATTTCATGCCAACTTCACCGACTC
GACTTTATCAAAATCTCGATGGAACAGACCTGCCCTTATTGAAGGCTCTT
ACTGGGAAACTTTACAATGTTCAATATATGATGTTCAGAGGTTTGCTGGC
AAATTTCCGAGTGAACAGGATTTTCTCATACTGGAAAGACATCACAAACC
CGACGTACCGACGAATTGTGCGCAAAGCTTTTTACCGTTTGAACACCATC
GTCCAAAAGAAGTTAGAAGCAAGAAATGCTGAACGTAAAGCCAAAAATCA
ATTGGGTTATCAAATCATGGAACCGAAATGGCTGACGAATAGCGTccata
tttgaaaatatttcaaccaAGCTATCAAATATGAACCTAGCCTGCTTAAT
ATATGACT
Run BLAST on NCBI

protein sequence of TCONS_00005072-protein

>TCONS_00005072-protein ID=TCONS_00005072-protein|Name=TCONS_00005072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp
MVGIKNVPDVFAPLLQDRKLADXEDGRLFVLHIPEMVGIKNVPDVFAPLL
QDRKLADVKSPISFFVLGDDGLLHVVAIQRNPVQTSEVDTSESSNWLLAK
GEAEMASDLYCQAKIHLGEVHFVSTIYCLSFRRHLSTKHPLYDFFKHHCE
GTVPHITTVFETLTTPNAAGSVIYGTGNQGFLDLSQKAFAERDYESNTYE
DFIEGNGLDDEDIKYYPFRDDVKVIMKEYEIFIDDIIKAYYRRGRIHRDA
ELQSWANELSPEGTVQPDAGRGKMKGFPAKFETCDQLRTFLKRFLWINLF
HTSANYPDYRDFMPTSPTRLYQNLDGTDLPLLKALTGKLYNVQYMMFRGL
LANFRVNRIFSYWKDITNPTYRRIVRKAFYRLNTIVQKKLEARNAERKAK
NQLGYQIMEPKWLTNSVHI
Run BLAST on NCBI

transcript from alignment at sc0000050:829040..831357-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005072 ID=TCONS_00005072|Name=TCONS_00005072|organism=Clytia hemisphaerica|type=transcript|length=2318bp|location=Sequence derived from alignment at sc0000050:829040..831357- (Clytia hemisphaerica)
TAGGCGATTGAGGACGGCCGACTGTTTGTACTTCACATCCCTGAAATGGT
GGGCATTAAAAACGTACCCGACGTATTCGCACCGCTATTGCAAGATCGCA
AACTTGCTGACGNTGAGGACGGCCGACTGTTTGTACTTCACATCCCTGAA
ATGGTGGGCATTAAAAACGTACCCGACGTATTCGCACCGCTATTGCAAGA
TCGCAAACTTGCTGACGTCAAGTCACCGATATCGTTCTTTGTGTTGGGAG
ATGACGGACTTTTACACGTAGTTGCGATCCAAAGAAATCCTGTTCAAAGT
ATGTTTGACCTCTATTTTTGATTAGGTATGGGGTTTGAGTGGAGGAGGAA
ACTTGATCCAAGTAACTACTGACGAAAACGTCTTTTCTCGATTGTAATTC
TATAAACAAAAAAGATTTCTTTCCACACAATCACTGTACAAAGCACTGAG
ATAATAAACTGAAAGCTAACCTTTAAAACTTTTCCTTTTTTCCAGCATCT
NCACTGTACAAAGCACTGAGATAATAAACTGAAAGCTAATCTGTAAAACT
TTTCTTTTTTTCCAGCATCCGAAGTTGATACATCAGAAAGTTCCAATTGG
CTTTTAGCTAAAGGAGAAGCTGAGATGGCCTCGGACCTTTATTGTCAAGC
TAAAATACATCTCGGAGAAGTCCATTTTGTGTCCACCATCTACTGTCTGT
CCTTTAGACGTCATTTAAGCACCAAGCACCCCCTATACGATTTCTTTAAG
CACCATTGCGAAGGGACTGTCCCTCATATCACCACAGTCTTTGAGACTTT
GACCACACCCAATGCTGCGGGTAGTGTCATCTACGGAACCGGGAATCAAG
GTTTTCTTGATTTGTCGCAAAAAGCTTTTGCAGAACGAGATTATGAAAGC
AACACTTATGAAGATTTCATTGAGGTAAGAACAATGCGTAAAGGCTTTTT
ACCCTTTATTAAGATTTGACCTGGGTTAGTCTGTTAAACTAAATGGCTTA
TGCAAAATTGTAAATTTGTGCAAATGCGTACATCTATTTCTTGCCGACTT
TGACACTATTCCTTAGAATCTTGTTTTAAAGAATCCAATATTTTGCGTTT
CCAGGGTAACGGTTTGGATGACGAGGACATTAAATATTACCCTTTCCGTG
ACGACGTCAAAGTAATCATGAAAGAATACGAGATTTTCATCGATGACATC
ATCAAGGCTTATTACAGAAGAGGAAGAATTCACAGGGACGCTGAATTACA
ATCATGGGCTAACGAGTTGTCGCCTGAAGGAACAGTTCAACCTGATGCTG
GGCGAGGAAAGGTGTGGAATGTGTTTAAATGTAACCAAACCCGTGTCTCA
TTTTCCAAATTAAAGCTTTTCAACTGGATATTATTTGTTTACCAGGGTCT
AATTTTGGGATTTTTTCCCAGTGTGTAACAGGTCTGTGTTGGCTTTGAGA
GTGTATTACCAAACTCGAAACTCAAGACAATGTTTTTCACTTCCAATTTG
CTAAAAATGAAGAGTTTCAATTTTTGGCCTTCTTCCTTACATGTATCTCT
CTGAATACACTTCCAACACCTGAAGTGTTTTCTTCTTCTTCTTCCCAGCC
AATATCTCTAAGTATTGTTATTTCATTTAGATGAAAGGTTTTCCAGCAAA
GTTCGAAACATGCGATCAGTTGAGGACGTTCTTGAAACGCTTTCTGTGGA
TTAACTTGTTCCACACTTCAGCAAATTATCCTGATTACAGAGATTTCATG
CCAACTTCACCGACTCGACTTTATCAAAATCTCGATGGAACAGACCTGCC
CTTATTGAAGGCTCTTACTGGGAAACTTTACAATGTTGTGAGTATATTAT
GTGGTTTTCATTTGACGACTTTCAAACTATCAACTGAAAGTTGAGTAAAT
CAATAGGGTGTTTTATATCTACAAATCCTAGGTTATAACTTACACCATTT
ACAGTGCTTGGTCGCTTGGCCGTATGGGTTTTGTTAATACCATATCTATG
TAATTAATCTGGAAATTAAATTCCTTTTCAGCAATATATGATGTTCAGAG
GTTTGCTGGCAAATTTCCGAGTGAACAGGATTTTCTCATACTGGAAAGAC
ATCACAAACCCGACGTACCGACGAATTGTGCGCAAAGCTTTTTACCGTTT
GAACACCATCGTCCAAAAGAAGTTAGAAGCAAGAAATGCTGAACGTAAAG
CCAAAAATCAATTGGGTTATCAAATCATGGAACCGAAATGGCTGACGAAT
AGCGTCCATATTTGAAAATATTTCAACCAAGCTATCAAATATGAACCTAG
CCTGCTTAATATATGACT

Coding sequence (CDS) from alignment at sc0000050:829040..831357-

>TCONS_00005072 ID=TCONS_00005072|Name=TCONS_00005072|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0000050:829040..831357- (Clytia hemisphaerica)
ATGGTGGGCATTAAAAACGTACCCGACGTATTCGCACCGCTATTGCAAGA
TCGCAAACTTGCTGACGNTGAGGACGGCCGACTGTTTGTACTTCACATCC
CTGAAATGGTGGGCATTAAAAACGTACCCGACGTATTCGCACCGCTATTG
CAAGATCGCAAACTTGCTGACGTCAAGTCACCGATATCGTTCTTTGTGTT
GGGAGATGACGGACTTTTACACGTAGTTGCGATCCAAAGAAATCCTGTTC
AAACATCCGAAGTTGATACATCAGAAAGTTCCAATTGGCTTTTAGCTAAA
GGAGAAGCTGAGATGGCCTCGGACCTTTATTGTCAAGCTAAAATACATCT
CGGAGAAGTCCATTTTGTGTCCACCATCTACTGTCTGTCCTTTAGACGTC
ATTTAAGCACCAAGCACCCCCTATACGATTTCTTTAAGCACCATTGCGAA
GGGACTGTCCCTCATATCACCACAGTCTTTGAGACTTTGACCACACCCAA
TGCTGCGGGTAGTGTCATCTACGGAACCGGGAATCAAGGTTTTCTTGATT
TGTCGCAAAAAGCTTTTGCAGAACGAGATTATGAAAGCAACACTTATGAA
GATTTCATTGAGGGTAACGGTTTGGATGACGAGGACATTAAATATTACCC
TTTCCGTGACGACGTCAAAGTAATCATGAAAGAATACGAGATTTTCATCG
ATGACATCATCAAGGCTTATTACAGAAGAGGAAGAATTCACAGGGACGCT
GAATTACAATCATGGGCTAACGAGTTGTCGCCTGAAGGAACAGTTCAACC
TGATGCTGGGCGAGGAAAGATGAAAGGTTTTCCAGCAAAGTTCGAAACAT
GCGATCAGTTGAGGACGTTCTTGAAACGCTTTCTGTGGATTAACTTGTTC
CACACTTCAGCAAATTATCCTGATTACAGAGATTTCATGCCAACTTCACC
GACTCGACTTTATCAAAATCTCGATGGAACAGACCTGCCCTTATTGAAGG
CTCTTACTGGGAAACTTTACAATGTTCAATATATGATGTTCAGAGGTTTG
CTGGCAAATTTCCGAGTGAACAGGATTTTCTCATACTGGAAAGACATCAC
AAACCCGACGTACCGACGAATTGTGCGCAAAGCTTTTTACCGTTTGAACA
CCATCGTCCAAAAGAAGTTAGAAGCAAGAAATGCTGAACGTAAAGCCAAA
AATCAATTGGGTTATCAAATCATGGAACCGAAATGGCTGACGAATAGCGT
CCATATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002868XLOC_002868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005072-exon-sc0000050-1575043694:831060..831357TCONS_00005072-exon-sc0000050-1575043694:831060..831357Clytia hemisphaericaexon
TCONS_00005072-exon-sc0000050-1575043694:830434..830792TCONS_00005072-exon-sc0000050-1575043694:830434..830792Clytia hemisphaericaexon
TCONS_00005072-exon-sc0000050-1575043694:830047..830253TCONS_00005072-exon-sc0000050-1575043694:830047..830253Clytia hemisphaericaexon
TCONS_00005072-exon-sc0000050-1575043694:829521..829727TCONS_00005072-exon-sc0000050-1575043694:829521..829727Clytia hemisphaericaexon
TCONS_00005072-exon-sc0000050-1575043694:829040..829326TCONS_00005072-exon-sc0000050-1575043694:829040..829326Clytia hemisphaericaexon
TCONS_00005072-exon-sc0000050-1510915933:831060..831357TCONS_00005072-exon-sc0000050-1510915933:831060..831357Clytia hemisphaericaexon
TCONS_00005072-exon-sc0000050-1510915933:830434..830792TCONS_00005072-exon-sc0000050-1510915933:830434..830792Clytia hemisphaericaexon
TCONS_00005072-exon-sc0000050-1510915933:830047..830253TCONS_00005072-exon-sc0000050-1510915933:830047..830253Clytia hemisphaericaexon
TCONS_00005072-exon-sc0000050-1510915933:829521..829727TCONS_00005072-exon-sc0000050-1510915933:829521..829727Clytia hemisphaericaexon
TCONS_00005072-exon-sc0000050-1510915933:829040..829326TCONS_00005072-exon-sc0000050-1510915933:829040..829326Clytia hemisphaericaexon
TCONS_00005072-exon-sc0000050-1491911889:831060..831357TCONS_00005072-exon-sc0000050-1491911889:831060..831357Clytia hemisphaericaexon
TCONS_00005072-exon-sc0000050-1491911889:830434..830792TCONS_00005072-exon-sc0000050-1491911889:830434..830792Clytia hemisphaericaexon
TCONS_00005072-exon-sc0000050-1491911889:830047..830253TCONS_00005072-exon-sc0000050-1491911889:830047..830253Clytia hemisphaericaexon
TCONS_00005072-exon-sc0000050-1491911889:829521..829727TCONS_00005072-exon-sc0000050-1491911889:829521..829727Clytia hemisphaericaexon
TCONS_00005072-exon-sc0000050-1491911889:829040..829326TCONS_00005072-exon-sc0000050-1491911889:829040..829326Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005072-proteinTCONS_00005072-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:829040..831357 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
713.701	676.251	265.207	197.29	26.2814	23.4203	192.263	184.596	234.656	242.521	147.857	174.342	33.7705	24.063	8.71691	9.63592	34.9066	28.309	36.5971	66.2792	5.8966	5.85216	219.349	196.752	0.809932	0.19346	8.39027	15.7304	79.3364	102.14
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013819LipOase_C
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Blast
[Close]
BLAST of TCONS_00005072 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.039e-19
Identity = 96/366 (26.23%), Postives = 161/366 (43.99%), Query Frame = 1 
Query:  271 VAIQRNPVQTSE----VDTSESSNWLLAKGEAEMASDLYCQAKI-HLGEVHFVSTIYCLSFRRHLSTKHPLYDFFKHHCEGTVPHITTVFETLTTPNAAGSVIYGTGNQGFLDLSQKAFAERDYESNTYEDFIEGNGLDD-EDIKYYPFRDDVKVIMKEYEIFIDDIIKAYYRRGR-IHRDAELQSWANELSPEGTVQPDAGRGKMKGFPAKFETCDQLRTFLKRFLWI-NLFHTSANYP--DYRDFMPTSPTRLYQ---NLDG--TDLPLLKALTGKLYNVQYMMFRGLLANFRVNRIF--SYWKD--ITNPTYRRIVRKAFYRLNTIVQKKLEA---RNAERKAKNQLGYQIMEPKWLTNSVHI 1302
            +AIQ N +   E    + +    +WLLAK     +SD +    I HL   H VS ++ ++  R L   HP++     H   T+   T   E L            TG  G + + Q+A  +  Y S  + + I+  G++  EDI YY +RDD  ++ +    F  +++  YY   + +  D ELQ + N++   G      GR K  GFP   ++ +QL  +L   ++  +  H + N+   D+  ++P +P  +        G  T   ++  L  +  +  ++     L+ F+ N +F   Y ++  I  P     V++A  R     +K LEA     AER  K QL Y  + P  + NSV I
Sbjct:  324 IAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVR-SSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGM----RGR-KSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKP-----VKEAMARF----RKNLEAIVSVIAERNKKKQLPYYYLSPDRIPNSVAI 674
The following BLAST results are available for this feature:
BLAST of TCONS_00005072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LOX52.039e-1926.23Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO... [more]
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