TCONS_00005074 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005074
Unique NameTCONS_00005074
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005074 ID=TCONS_00005074|Name=TCONS_00005074|organism=Clytia hemisphaerica|type=transcript|length=412bp
GTTCACTTCGCGTGTGCACTGTTTGGACTGCAATGTCTGTAAAAAGAACT
ATCAGGAGTTCTACAGTACGAAATGCATTTAAGAACTTTTTGGTGCCgat
ttttaaagataaattttttgttGTTACTCTACGTTGTCTTTGGGATGTAC
AAGAACAAGATATAAATTTAGCAAGCTATAATATAGATAGCAAACGAGAC
GAACTTGAATCGATCGTGAACTTATATGACGATGTGGTAGCCTATTTTTC
TTGCACGTGTGCNAATCGATCGTGAATTTATATGACGATGTGGTAGCCTA
TTTTTCTTGCACGTGTGCCATGCAGTCCTCTATTTTGAGAAAAGAACTGA
AAAAAACAAATGGAAATACTGAAAGTGACCAAGAATACCAACAATATGAG
GATGATGACGNN
Run BLAST on NCBI

transcript from alignment at sc0000050:12109..12520

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005074 ID=TCONS_00005074|Name=TCONS_00005074|organism=Clytia hemisphaerica|type=transcript|length=412bp|location=Sequence derived from alignment at sc0000050:12109..12520 (Clytia hemisphaerica)
NNCGTCATCATCCTCATATTGTTGGTATTCTTGGTCACTTTCAGTATTTC
CATTTGTTTTTTTCAGTTCTTTTCTCAAAATAGAGGACTGCATGGCACAC
GTGCAAGAAAAATAGGCTACCACATCGTCATATAAATTCACGATCGATTN
GCACACGTGCAAGAAAAATAGGCTACCACATCGTCATATAAGTTCACGAT
CGATTCAAGTTCGTCTCGTTTGCTATCTATATTATAGCTTGCTAAATTTA
TATCTTGTTCTTGTACATCCCAAAGACAACGTAGAGTAACaacaaaaaat
ttatctttaaaaatcGGCACCAAAAAGTTCTTAAATGCATTTCGTACTGT
AGAACTCCTGATAGTTCTTTTTACAGACATTGCAGTCCAAACAGTGCACA
CGCGAAGTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002870XLOC_002870Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005074-exon-sc0000050-1491911889:12109..12520TCONS_00005074-exon-sc0000050-1491911889:12109..12520Clytia hemisphaericaexon
TCONS_00005074-exon-sc0000050-1510915933:12109..12520TCONS_00005074-exon-sc0000050-1510915933:12109..12520Clytia hemisphaericaexon
TCONS_00005074-exon-sc0000050-1575043694:12109..12520TCONS_00005074-exon-sc0000050-1575043694:12109..12520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:12109..12520 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.44674	2.72681	0.989402	0.193595	0	0.18624	1.34814	0.631058	1.03091	2.5539	0.531188	6.40167	0.232464	0.362125	0	0.106498	0.393591	0.134473	0	0	0.33795	0	2.00385	0.546536	0.750559	0.334928	0	0	0	0.395266
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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