TCONS_00005276 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005276
Unique Name	TCONS_00005276
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2638

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000052:216690..226301+
coding sequence from alignment at sc0000052:216690..226301+

transcript sequence

>TCONS_00005276 ID=TCONS_00005276|Name=TCONS_00005276|organism=Clytia hemisphaerica|type=transcript|length=2638bp
TGCAGCTGTCAATAGAGGCTTTGTACAACCTAAGAGTGGAAAGTTTGTGT
TAGTGGCAATTGGCAGGCAACAGATTGCAAAACCTATCACGCTAAAGCTG
GATTTTTTCTTGCAGAATCTGgtctttttaaatttgtattgaaACTgata
tttattttcagttttagcTTATTAAAAGAGAGGGATTTATAATGCttaaa
tcatattttttttcttaataaataagaaacaaaaataCAGTAATACAGCA
GTCTTGAAATATATATAATTGATAATCATGGCAGCACCACCTTATCCTTT
TTCTCAACAAGCAAGTTTCAATACTGGTGCGGCTCCTCCTAATGCACCAT
ATACCAATCCACAATCCAAAATTGAACTGAAAATATCTTGCAGAAACTTG
GTGGATTTAGATGTGTTTTCCAAGTCAGATCCATTTTGTGTGTTTTACAT
GCAAGGTGCTACAAAAGGATCTTGGAGAGAGATTGGACGTACTGAAGTAA
TATGGGACAATTTGAATCCTGATTTTGTAAAATCCTTTATTGTTGATTAC
TTTTTTGAAGAACAACAAGTCGTCAAATTTGAAATATATGATGCTGACAG
TGACTCAAGAGATTTAAGTCAACACGATTACATTGGCAAGCTAGTCACAT
CCGTTGGTTCAATTGTAGGTGAAAATGGAGGAAGAATCAAACATCAATTG
CAGGTCCCTTCAGCtaaagactttgaaagGAATGACAAATATACACGTAA
AAGTCCTGGCACTATTATTGtcACTGCAGAAGAAGTCAGTTCAAATAAGG
ATGTAGTTACAATGCAGTTTTGTGGTAAAAAGTTGGACAAGATGGACTTC
TTTGGAAAATCAGATCCTTTTTTGACGTTTGAAAGATGTTCTGAAGATGG
AAGCTACTCCGTTGTTCATAAAACAGAAGTCATCAAGAATACGTTGAACC
CAACTTGGAATGCGTTTACTGTCAAATCACAGACTCTGTGTAATGGAGAC
CCACAAAGGACAATTTTGGTCAAATGTTGGGACTGGGAACGCAATGGATC
ccATCGAATCATAGGTCAATTTGAAACCACACAAAATGACTTAGCTGGAT
ATGGTGCAAACCGACCTTCTTCTTTTGATCTTATACATCCtgaaaagaag
atgaaaaagaagtACAAAAATTCTGGAACGataCACATCTTGAGTTGTAA
AGTTGTACAGAAACCCTCATTTTTGGATTACATCAGAGGAGGACTGGAAC
TTGCTTTCGTCGTAGCTATAGACTTCACAGCATCGAATGGGGATCCAAGA
ACACCTCAATCACTCCATTATAGCTCACCGAACAAACCGAGCGATTATGT
GCAAGCTCTACAAGCTCTCGGTGGTGTCATTGAGGATTATGATACggATA
AATTGTTTCCTGCTTATGGCTTCGGTGCAAAACTACCACCTAATTGGAAT
GTCTCCCATGAATTTGCACTGaaCTTCAACCCAGCCAATCCTCATTGCCA
TGGTATAGACGGCGTTATTGCAGCTTATTACAATTCGATCGCAAATGTCC
AGCTTTATGGTCCAACAAACTTTTCACCAGTCATAAACAGTGCATCCAGt
aTTGCAAGACAATCCATGCGACAAGGCATCACTCAATACTTCATTCTTCT
GATCATAACAGATGGTATCATTACAGATATGGAACGAACGAAAGAAGCTA
TCGTAGAGGCAGCCAAGCTCCCGATGTCAATCATTATCGTAGGAGTTGGA
AATGCTGACTTTGATGCGATGGAAGTTTTGGACGGGGATGATGTCCGCTT
GACGGATTGTCGCGGAAGAGTTGCTGAACGAGATATCGTGCAGTTCGTGC
CGTTCCGCGATTACATGAAGAACAGTACGTACGATCCAATGAGCGGCGTA
CGTCTTGCGAAAGACGTCCTTCACGAACTTCCTGATCAACTTGTTGAATC
AATGGAAAAACATGGCGTCAAACCAAACCCACCGCCACCCGCTTACAGCC
CCTGAGTTGAGAACTAAAGAGTTGACGTGGTAAACGTATGATATCGTGTA
TCAGCTGGTCGATGAACCAGTGCTTGAGATCTCATCTTTCGATCGCCGAT
GGCAAGACCAGGAGGATTTCCACACGCGAATATTTACATAACTTGCTCGA
AACTTTCTTCGAAACAGCTCAGGATAAAATGAAGTTGATTCTTGATTTCA
TATTTTGACAGCTTGATCATGGTGTGTTCAGTCCTTGGTGACAAAGACAT
TTTAAGTGATCTCTATTATAAACCAAATTAAACAGGACTTTCCACGAAGC
GCAGCtttcattgatttttatttactttttactgCATTTTTTCCTTAACC
TTTTTCGTTTAGATGAAATCTagataatttgagattatattAATTTTTGC
CTCTTTTTTTCAgagatattttaatttttgatataacattattttcagaa
atgaaatgtttttgtaTGATAATACCTGTAgatattttatataaaagatt
taTTTGTAACATATTATAGCACTCTGTACTGTTAAGTTTTTAACATTTAT
TATATACTTCTTATTTTGTACTGCTTTAAGATTTTATGTAATATTTGTAT
gatattattattgttatacCAAATAAAGTGGGGTTagg

Run BLAST on NCBI

protein sequence of TCONS_00005276-protein

>TCONS_00005276-protein ID=TCONS_00005276-protein|Name=TCONS_00005276-protein|organism=Clytia hemisphaerica|type=polypeptide|length=575bp
MAAPPYPFSQQASFNTGAAPPNAPYTNPQSKIELKISCRNLVDLDVFSKS
DPFCVFYMQGATKGSWREIGRTEVIWDNLNPDFVKSFIVDYFFEEQQVVK
FEIYDADSDSRDLSQHDYIGKLVTSVGSIVGENGGRIKHQLQVPSAKDFE
RNDKYTRKSPGTIIVTAEEVSSNKDVVTMQFCGKKLDKMDFFGKSDPFLT
FERCSEDGSYSVVHKTEVIKNTLNPTWNAFTVKSQTLCNGDPQRTILVKC
WDWERNGSHRIIGQFETTQNDLAGYGANRPSSFDLIHPEKKMKKKYKNSG
TIHILSCKVVQKPSFLDYIRGGLELAFVVAIDFTASNGDPRTPQSLHYSS
PNKPSDYVQALQALGGVIEDYDTDKLFPAYGFGAKLPPNWNVSHEFALNF
NPANPHCHGIDGVIAAYYNSIANVQLYGPTNFSPVINSASSIARQSMRQG
ITQYFILLIITDGIITDMERTKEAIVEAAKLPMSIIIVGVGNADFDAMEV
LDGDDVRLTDCRGRVAERDIVQFVPFRDYMKNSTYDPMSGVRLAKDVLHE
LPDQLVESMEKHGVKPNPPPPAYSP

Run BLAST on NCBI

transcript from alignment at sc0000052:216690..226301+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005276 ID=TCONS_00005276|Name=TCONS_00005276|organism=Clytia hemisphaerica|type=transcript|length=9612bp|location=Sequence derived from alignment at sc0000052:216690..226301+ (Clytia hemisphaerica)
TGCAGCTGTCAATAGAGGCTTTGTACAACCTAAGAGTGGAAAGTTTGTGT
TAGTGGCAATTGGCAGGCAACAGATTGCAAAACCTATCACGCTAAAGCTG
GATTTTTTCTTGCAGAATCTGgtctttttaaatttgtattgaaACTgata
tttattttcagttttagcTTATTAAAAGAGAGGGATTTATAATGCttaaa
tcatattttttttcttaataaataagaaacaaaaataCAGTAATACAGCA
GTCTTGAAATATATATAATTGATAATCATGGCAGCACCACCTTATCCTTT
TTCTCAACAAGCAAGTTTCAATACTGGTGCGGCTCCTCCTAATGCACCAT
ATACCAATCCACAATCCAAAATTGAACTGAAAATATCTTGCAGGTttgta
ttcaaaatttttattagagCTTAGAAGGGAAAATAATGAGCAATTCATTC
AATAGAATCCAGAGACTTAATCTGACATGTTTTTAATCTGTTTTAATGTT
AAATAAAAATGTAATCCTTCACCAAGCTTGAAATAGTTCGGTAGCAATTG
AGTGAtaaaaatccaaacaaaaacaaaaatctgtCACTGATTATTTTTAT
TAGGAAACTTTGCTTTTGATTGCCCTGTAAAATGCTCATTAGCAAAGTTG
ACAAAGGTGAAACTAAAAGCTGTAAcagtattttctcaaattatttcatt
gatagAAATATTTAACAGTTCTGCAACTCTATTTTAGAAACTTGGTGGAT
TTAGATGTGTTTTCCAAGTCAGATCCATGTAAGCTTTGCTTTTATGTGGT
GTGAATTTAAACTGTCATATAAGCTTTTAATTAAATAAGTAAATACTGCT
TTATAGTTTTGATAATATAAAAGTAATGAAGTATAAAAGAAGAATTTCTA
GAACTTCAACAGaagtatttttctattttgagaTGCACCAAATACATAGC
CTCGATAAACATAATTCTTATGTCCCATTTCTCCTACTTAATTTCCATAA
CTCTGATTATATATTGATACATGCTACTGCTTTGTATTTCAGTTTGTGTG
TTTTACATGCAAGGTGCTACAAAAGGATCTTGGAGAGAGGTTGGTTATTC
TTTATTAACTCTTCAACTTCTGTTTTACTCATTTTTGTAATTAGTAAAAT
AAGATCTGAACTTATAAACCTTAAATATGGTTAATTTCTAACGTTTATTA
TACAGTTTTTCAAtcagtttttgtttaaaatgtaTTCAACTTTCAAAGAA
TATAACTCTTATTTTCAGATTGGACGTACTGAAGTAATATGGGACAATTT
GAATCCTGATTTTGTAAAATCCTTTATTGTTGATTACTTTTTTGAAGAAC
AACAAGTCGTCAAATTTGAAATGTGAGTTGtttcgaaaaaaatcgaaatt
ttataACTCAAGCACCTTTTCAATATCAGTAACAGTTTCCATTTATAGTA
ATTAATTGATCAATTATAGTAGCACTTTTCAATATCAGTAACAGTTTTCA
AACTTAGTCCATCTTAAATGGAGTCGTGTTGTGTTTTTCTAAACATTTAA
ATTACCCTTTTTAGATATGATGCTGACAGTGACTCAAGAGATTTAAGTCA
ACACGTAAGTTGGCTTATTTGTTGATTGAGTGTAAAGTTGACGCTTTCTa
atgttctactattcgattgtctccattattcgataatattgaaagccacT
ATCAACACAAAACTTTCATAAAAGACACTGTACTACTCGAAATGCTCCCA
TATTCGATGAAATCCagttccccttgaaaatcgaattaacgagcgtcaac
tgtatttccaAGGATATTAGATAACTAAGGTATACAGGTTCAATTAAATG
CCTAACTGAATAAATTGTTGAAATGTTTGCTAAatgtttttattggcatt
tCAGGATTACATTGGCAAGCTAGTCACATCCGTTGGTTCAATTGTAGGTG
AAAATGGAGGAAGAATCAAACATCAATTGCAGTGAGTTTTAAAGACAGTA
TATTACACTGATAATATCTTGTAGGGCaaactttaaaatattgatCTCCC
CTACAACAATCTATTACATTCCTGAAAATATCTATTTTCTTTACacaaac
tttttaaaatatcaGTCCCTCCTTCGACAATGTATTACACCCCTgagaat
atattttttctttatgtAAACTTTAAATATCAATCTCTGCTACGTCAGCT
TCTCTAACTAAATTTAAAAACTAACAtataaaaagtcataaaatacTGAA
CAAAAGTAAATCACTTTAactaaaacaatttaaaaaagtaagttACATCA
ACATTTAAATCAAGGCGTAATATCATTCATATCAGATTAGGAAGATTGCT
TTGTCTTCAAATAAGTTGGTCCATCATTTTGTTCTTTGTTTCCATCTTGT
TCAGGGTCCCTTCAGCtaaagactttgaaaggtttGTGACTTCAAATTGT
TTATCATCAAACTGGTCAAATCTTgagtttttttacttgaaataattttt
tttttcttttctaatacCTACAAAAGTGTGTCCAAGAAGCTATCAATTTT
CATAATCTTCATTACTCATGAGGCTACAATAGTTCTGATTATGGGAATCG
TGATGTTTCGTTGGTTTAGGTCAACTGTGATTTGAAATTACATAACTTAC
AGTAGATTGGTTATGAATTTGGTTAACGATTGACTGCTGTACATAATCAA
ATTGCTGGACTTTGCCGCTTATCATAAACATTGAACATTGCACACCGCAC
AATATACAAACTCACTTCACGCATATACGCATTAAGCACATAAGCTAAAT
ATTTAGAATGAATTGCTTTTCATATATTGTAATTAATGTTTTCTTAATTT
CAGGAATGACAAATATACACGTAAAAGTCCTGGCACTATTATTGGTAtga
tttattgaaatttaattttttcagataaaatacATGCTATATGGAGCTGA
AATCATACTGCTACAGTTATGAGTTTCTTCAATTTagttgatatattttt
tttgtctaGTCCTTTGACCAGAGCTATTAGTCAGCTTACTtcccaaccaa
aatttcatcttAGATTTGAGAATCATTTGGGTATCTCCAGGATTTTTTAC
ACTAAGTACTATTAAAGGTGTGTTCTGGGGAAAGAGAAATTCAGATATGA
ATACCAGTTCCAAGTTAAAGGTTCCAATACAGAATTTAGTAGGCAGAATG
TCACGTTTAagctctttttattttttaaacagaaaaaCCTTGAATTTGCT
CTATATTATAGATTATAGAGCATATCAattactttcttttttatattaag
tacttctatattatttttttagtcACTGCAGAAGAAGTCAGTTCAAATAA
GGTAAACTTGTCAATGTTTAAATTCAATTAAATTTATTCAACTTGACGTA
ATTTGAAAAAAGCTTTTATCATTCTGCAGCTTTCAGCAAAGGTTTTTGTC
ATGATCCCTGTTTATGTTGTGGGATTGATTATTCTTACTTAAACCTTCCT
TTTCAATATACAGGATGTAGTTACAATGCAGTTTTGTGGTAAAAAGTTGG
ACAAGATGGACTTCTTTGGAAAATCAGATCCTTTTTTGACGTTTGAAAGA
TGTTCTGAAGATGGAAGGTAATAAATGGATAGTTTGtagaggggtatgaa
cccctTAGGTTTATTTCACCCCCTTAGGTTTATTTCACCCCTTATACCTA
TTTCCCCTTCTGTAACGAATCTTACCACcctattttttacagaaaatctg
tTTTGAAGGAAACACTATCTAAGCGCTACCAAAGTAAACAAATTGTATAC
AGTCACGAGCCAACAATttaataatatgaaaatataacTAGCGTTTTTAT
TAACATGATATGTGGCCATTTAGATATGATTGAgttgaccaaaatttcca
acccctgTTTCTGATTTGATCCCCCTACATTCCCACCTCCCAGTTTTTAA
GGCGAATCTTGTTACTGCCCCCTACAAAAGCCCCAAAAATATGGCATGAA
GAAAGGAGGTGCAAACTATGTAATGATATTAAAATAACAGTTCAAGTAAG
CTAATCTGTAAAAACTATGTCATTCAATTTCGAGATTCCTATTCAGCATT
CAGCACAGACTCTTGCGTAGTTATTAtatgataaaattttgattttccag
CTACTCCGTTGTTCATAAAACAGAAGTCATCAAGAATACGTTGAACCCAA
CTTGGAATGCGTTTACTGTCAAATCACAGACTCTGTGTAATGGAGACCCA
CAAAGGTGAGATTTCTTGCCATTAGATTATAATTTTGGATTATGTCAAGA
ACGCTTAGTatgatttgattttgtatctgAAGAATTTTAATCAGCATGGA
CAACTTTTCATTTCAGGACAATTTTGGTCAAATGTTGGGACTGGGAACGC
AATGGATCGTAAGTTTTACTTTGCTGTAATATGAATCATCAAGAATTTGA
TTGTAGTATCCATTATCTGCCATTCCGAAgttgaaaatgactttcctttC
TCTAAAACCTTCAAATGTATTATACGTACGCAGCATGCACACGTAATACA
GTGCTGGTGAGTcccaataaggacgaaatgcatatacttctctgccaccc
aaatctcctgagtgaatatagcTGAAcggaaattcttatttcttcacata
tataatataatattctttttcatttcagccATCGAATCATAGGTCAATTT
GAAACCACACAAAATGACTTAGCTGGATATGGTGCAAACCGACCTTCTTC
TTTTGATGTAAGTAAGCCTTTGCTTCtggcattacatcacggacccaata
gctgattggttgtaagtgacgtaaaatggggcaatacgtcactttcaacc
aatcagctgttgggtccgtggaagacattgcaatgttgcatatcatgaat
agtgtTACCTTTAAAAGATAGTGTCTCGTTATGGAAGGgaatttattttc
ctttttgaaGGAATGATATTAAACATCCTTTATTAAATATGAGGCTCAAA
AAACCTGAGTTACAAAAACCCAGATTAGGACAAATGTAAggtcataattt
caaaaatgtgtAAATTTTAGAGGGATTCCTAATTGACTGTTTACTTTTCA
TTTCAGCTTATACATCCtgaaaagaagatgaaaaagaagtACAAAAATTC
TGGAACGGTTAGCATTTGAACTTTTGATTGACCTTTCTATCTCTTAAAAC
ATGTCGAGGAAATTTTAAATATCAATAGCTGCAATCTTTTACACCATTTT
ATATTTCTTATTGAACTGTAACGAGAGTAGCCTAAATTCTGATTTCAAAC
TTAGAGTTTCATGGCGCGTCCATACCAatctcaaaagaaaattttcagtg
ccaatcttcagtgaaattaAATCGAACACTAGTACTATTTTGAGATCCTC
TGGGCAACATCAATGTTTTAACTGTAACTAATTTTGAGTGCAAATTGCAT
CTAAAtcattctttgtttttagataCACATCTTGAGTTGTAAAGTTGTAC
AGAAACCCTCATTTTTGGATTACATCAGAGGAGGGTAGGTTATTGAACAG
GATGTGACtaacaatttttgattatttttaatttacattatatattattt
tacaACAGGATATTCTTTCCTTCATTAAACTTGATaatctaaaaataaat
aaataaagtagTGTTATTAAAACTGTACTCAAccccctgcttgttaattt
ttcaacccCCTGGTAAATAGGTCCCATCTGttcattaaaatttgaaattt
tttccaaacccTACTCCATTAGGCATCTGGAAGTAGATAACCAAAACATT
TACAACTGCTTCATGGTTAAGTTCAATTGCtagtttttattaaattttat
aaaatatattttatcaaagaTATTGTACTAATTTTATCACTCTCCTTCTA
GACTGGAACTTGCTTTCGTCGTAGCTATAGACTTCACAGCATCGAATGGG
GATCCAAGAACACCTCAATCACTCCATTATAGCTCACCGAACAAACCGAG
CGATTATGTGCAAGCTCTACAAGCTCTCGGTGGTGTCATTGAGGATTATG
ATACGTGAGTAGAGATACTAGAGTATTaagaaaactaatttttgcgggaa
cttattATTTCGCGGTGGAATCAATTTTCACGGTTGTGCCCTGCATTTGA
CATATTTTTCCTGGAGATTTTTTAATGATTgtgatgaaaatgaccaaatt
aGTTTGCGGATTCTAATTTTTGCAGTTTTGCAATAGTTccagcgaaaatt
agttcccttaaggtatatctTAAAAACAGTATCAAAGTTTTTTATTAATA
TCCTTTAACCTTTGATTACCTTTAAATTTACTCGTGAAgatttaataaat
atttttcatatgaaaaccatgtatttttaattcttttttttagggATAAA
TTGTTTCCTGCTTATGGCTTCGGTGCAAAACTACCACCTAATTGGAATGT
CTCCCATGAATTTGCACTGGTAAGATGATATTGTTTTCTTGTGCATTATT
CAGTTTGTTTTATAATAGtttatattttagttttttatatattttcaacc
tctttaaacaatttttagaaCTTCAACCCAGCCAATCCTCATTGCCATGG
TATAGACGGCGTTATTGCAGCTTATTACAATTCGATCGCAAATGTCCAGC
TTTATGGTTAGTGTGATATCATTATTTACTATACTTTTTGTATTATTATG
AACAAATATGTATTCCTTTTACGCGTGTTGAAGTCATGAAGACTTCACTG
TATCTTTTTAGTATATATAggcttttccgtctcaaaattctgcataattc
accagGATTTCAAGAATAAATACTAATTTGCTGTGAAAAACCATTTTCTG
TCTCAGACGAAAATCCTTATTTTGAACACTTAACTTTTAATTCTTGTAAA
CAACGTTcttattgttttttctttagGTCCAACAAACTTTTCACCAGTCA
TAAACAGTGCATCCAGGTAACTTTTATTCATGGCTTATTGTAGTTCCCAT
CGCATCAACAATTAATGCTTACTGATGACGTCCATcaataacgtaaataa
agcctgggatacacgagGACGAGGTTGGTGCATTGATTTTCCATAGTATC
AAAGTTCTGAACATACTGACTTTTTCATAATCATCTGAAATGaccattat
ttttattattttgtttttagtaTTGCAAGACAATCCATGCGACAAGGCAT
CACTCAGTAAGTGAACTAATTAATGAAAATCAATATTCTTCTTATCAGCG
TATAGAGTTCTTTATCGTCTCGCACGGATTTCCGTTTCAGCTAAGAATAT
AAAGAGGCTTTTTTCGtcttaaaatttcaagaatCTGGCTtatttaatat
taatataatttacTTTTAAACTTGCGTCATTTGATTATATCAATACAAAA
CAGCAAACTGATTTCaactcaaattttcatttttctttttacaaacTCAC
TCTAAagacattttgattttctttttaccCTATAGATACTTCATTCTTCT
GATCATAACAGATGGTATCATTACAGATATGGAACGAACGAAAGAAGCTA
TCGTAGAGGTGGGTATCAATTTAATCAGTGTCGTAGCTACCGGGGGCAAG
ATTGTTTTCTATTTCtccaaataaaatttcattttaagtgCATTTTCACG
ATTTCACGATTTCACGATTCGCCTCCCTTTTACAAAATGCCTTTTCCTCA
AAGAAATTTACACCAGTGTTTGAGGTATTGGAAAATTCCAGGGGTCaata
gatcttttcataaattacgtcacgaacatcacttgccccGTTTTAAAATT
ACTGCCacggtgattaactcccagtggattttattaCAACGACTTtccat
tcataaaaaaaataatttaatgtccCATGAAAATTgcttgaatacgaggc
aagtgatgttcgtgacgtaatttatgaaaaggtctatgagAACCAAAGAT
GGGGGATATCGACATAAATCCAGAGAGGTCAGCCTTCTAGAAACCATCTC
CCCGGTGTTCTTGAAACAGATTCCTGGAATACTTAGCTCACTGAGTAATT
TCGACGGTGATTGGCTcataatgaaaaatgatttatttattttaatttct
ttttctcatGACAGGCAGCCAAGCTCCCGATGTCAATCATTATCGTAGGA
GTTGGAAATGCTGACTTTGATGGTATGTTTTCTCTTATTATATTTTTGAA
AGCATGCAAACATTACAAAACCTATGGCACAAAGCCGGAAGACTAGCTTT
CACCCACTGAACCCATATTTCTTTCTTGTACAACATTGTTCTGAAGGGAG
AAGGAAGTATGGCTTTGACCTGGAGCTGCTTTCGGTTGGATTTAACTCAC
TGAACCCATTACAGATATGGAGTGAACTGCTAGAATAATGCCATAATATT
TTGTCAATCTAAtactctttttctcttttccagCGATGGAAGTTTTGGAC
GGGGATGATGTCCGCTTGACGGATTGTCGCGGAAGAGTTGCTGAACGAGA
TATCGTGCAGGTAAGCAGACTAAGTAAACTCTGTTGTATGATATACTCCC
TACCCAAGtgattagcgagtttatgtatttgcactttttggGACGGTGAA
GTGAAAGAAGCAATTTGGAATAGCCTGCAGTTTTGACCTGCAAAATTGaa
gacggtaaaagtgctgatttaccgtcgtcctcagtcagtcaggatcttga
caaattagaaccttacggcctccgtcacagaaaaacacacatacataaac
tcggtattaaaAAGTCTGTTGTTAAAAAACATTTAGTTCTGATATTTTCA
TGTTATACTTTTCGTAGTTCGTGCCGTTCCGCGATTACATGAAGAACAGT
ACGTACGATCCAATGAGCGGCGTACGTCTTGCGAAAGACGTCCTTCACGA
ACTTCCTGATCAACTTGTTGAATCAATGGAAAAACATGGCGTCAAACCAA
ACCCACCGCCACCCGCTTACAGCCCCTGAGTTGAGAACTAAAGAGTTGAC
GTGGTAAACGTATGATATCGTGTATCAGCTGGTCGATGAACCAGTGCTTG
AGATCTCATCTTTCGATCGCCGATGGCAAGACCAGGAGGATTTCCACACG
CGAATATTTACATAACTTGCTCGAAACTTTCTTCGAAACAGCTCAGGATA
AAATGAAGTTGATTCTTGATTTCATATTTTGACAGCTTGATCATGGTGTG
TTCAGTCCTTGGTGACAAAGACATTTTAAGTGATCTCTATTATAAACCAA
ATTAAACAGGACTTTCCACGAAGCGCAGCtttcattgatttttatttact
ttttactgCATTTTTTCCTTAACCTTTTTCGTTTAGATGAAATCTagata
atttgagattatattAATTTTTGCCTCTTTTTTTCAgagatattttaatt
tttgatataacattattttcagaaatgaaatgtttttgtaTGATAATACC
TGTAgatattttatataaaagatttaTTTGTAACATATTATAGCACTCTG
TACTGTTAAGTTTTTAACATTTATTATATACTTCTTATTTTGTACTGCTT
TAAGATTTTATGTAATATTTGTATgatattattattgttatacCAAATAA
AGTGGGGTTagg

Coding sequence (CDS) from alignment at sc0000052:216690..226301+

>TCONS_00005276 ID=TCONS_00005276|Name=TCONS_00005276|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at sc0000052:216690..226301+ (Clytia hemisphaerica)
ATGGCAGCACCACCTTATCCTTTTTCTCAACAAGCAAGTTTCAATACTGG
TGCGGCTCCTCCTAATGCACCATATACCAATCCACAATCCAAAATTGAAC
TGAAAATATCTTGCAGAAACTTGGTGGATTTAGATGTGTTTTCCAAGTCA
GATCCATTTTGTGTGTTTTACATGCAAGGTGCTACAAAAGGATCTTGGAG
AGAGATTGGACGTACTGAAGTAATATGGGACAATTTGAATCCTGATTTTG
TAAAATCCTTTATTGTTGATTACTTTTTTGAAGAACAACAAGTCGTCAAA
TTTGAAATATATGATGCTGACAGTGACTCAAGAGATTTAAGTCAACACGA
TTACATTGGCAAGCTAGTCACATCCGTTGGTTCAATTGTAGGTGAAAATG
GAGGAAGAATCAAACATCAATTGCAGGTCCCTTCAGCtaaagactttgaa
agGAATGACAAATATACACGTAAAAGTCCTGGCACTATTATTGtcACTGC
AGAAGAAGTCAGTTCAAATAAGGATGTAGTTACAATGCAGTTTTGTGGTA
AAAAGTTGGACAAGATGGACTTCTTTGGAAAATCAGATCCTTTTTTGACG
TTTGAAAGATGTTCTGAAGATGGAAGCTACTCCGTTGTTCATAAAACAGA
AGTCATCAAGAATACGTTGAACCCAACTTGGAATGCGTTTACTGTCAAAT
CACAGACTCTGTGTAATGGAGACCCACAAAGGACAATTTTGGTCAAATGT
TGGGACTGGGAACGCAATGGATCccATCGAATCATAGGTCAATTTGAAAC
CACACAAAATGACTTAGCTGGATATGGTGCAAACCGACCTTCTTCTTTTG
ATCTTATACATCCtgaaaagaagatgaaaaagaagtACAAAAATTCTGGA
ACGataCACATCTTGAGTTGTAAAGTTGTACAGAAACCCTCATTTTTGGA
TTACATCAGAGGAGGACTGGAACTTGCTTTCGTCGTAGCTATAGACTTCA
CAGCATCGAATGGGGATCCAAGAACACCTCAATCACTCCATTATAGCTCA
CCGAACAAACCGAGCGATTATGTGCAAGCTCTACAAGCTCTCGGTGGTGT
CATTGAGGATTATGATACggATAAATTGTTTCCTGCTTATGGCTTCGGTG
CAAAACTACCACCTAATTGGAATGTCTCCCATGAATTTGCACTGaaCTTC
AACCCAGCCAATCCTCATTGCCATGGTATAGACGGCGTTATTGCAGCTTA
TTACAATTCGATCGCAAATGTCCAGCTTTATGGTCCAACAAACTTTTCAC
CAGTCATAAACAGTGCATCCAGtaTTGCAAGACAATCCATGCGACAAGGC
ATCACTCAATACTTCATTCTTCTGATCATAACAGATGGTATCATTACAGA
TATGGAACGAACGAAAGAAGCTATCGTAGAGGCAGCCAAGCTCCCGATGT
CAATCATTATCGTAGGAGTTGGAAATGCTGACTTTGATGCGATGGAAGTT
TTGGACGGGGATGATGTCCGCTTGACGGATTGTCGCGGAAGAGTTGCTGA
ACGAGATATCGTGCAGTTCGTGCCGTTCCGCGATTACATGAAGAACAGTA
CGTACGATCCAATGAGCGGCGTACGTCTTGCGAAAGACGTCCTTCACGAA
CTTCCTGATCAACTTGTTGAATCAATGGAAAAACATGGCGTCAAACCAAA
CCCACCGCCACCCGCTTACAGCCCCTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003009	XLOC_003009	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00005276-protein	TCONS_00005276-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000052	supercontig	sc0000052:216690..226301 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.58525	1.78623	1.96845	2.65343	19.2572	13.125	11.1002	13.0245	7.45349	9.63138	15.7763	4.86665	13.1409	6.67498	4.775	9.68494	11.3791	12.4907	11.9328	12.5247	7.5162	8.70982	7.89548	8.73169	7.88515	9.87382	33.9165	18.2046	14.2249	9.80282

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002035	VWF_A
IPR000008	C2_dom
IPR010734	Copine

Blast

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BLAST of TCONS_00005276 vs. Swiss-Prot (Human)
Match: CPNE8 (Copine-8 OS=Homo sapiens GN=CPNE8 PE=1 SV=2)

HSP 1 Score: 588.186 bits (1515), Expect = 0.000e+0
Identity = 302/540 (55.93%), Postives = 403/540 (74.63%), Query Frame = 2

Query:  359 PQSKIELKISCRNLVDLDVFSKSDPFCVFYMQGATKGSWREIGRTEVIWDNLNPDFVKSFIVDYFFEEQQVVKFEIYDADSDSRDLSQHDYIGKLVTSVGSIVGENGGRI-KHQLQVPSAKDFERNDKYTRKSPGTIIVTAEEVSSNKDVVTMQFCGKKLDKMDFFGKSDPFLTFERCSEDGSYSVVHKTEVIKNTLNPTWNAFTVKSQTLCNGDPQRTILVKCWDWERNGSHRIIGQFETTQNDLAGYGANRPSSFDLIHPEKKMKKK-YKNSGTIHILSCKVVQKPSFLDYIRGGLELAFVVAIDFTASNGDPRTPQSLHYSSPNKPSDYVQALQALGGVIEDYDTDKLFPAYGFGAKLPPNWNVSHEFALNFNPANPHCHGIDGVIAAYYNSIANVQLYGPTNFSPVINSASSIARQSMRQGITQYFXXXXXXXXXXXXMERTKEAIVEAAKLPMSIIIVGVGNADFDAMEVLDGDDVRLTDCRGRVAERDIVQFVPFRDYMKNSTYDPMSGVRLAKDVLHELPDQLVESMEKHGVK 1972
            P +++E+ +SCRNL+D D FSKSDP CV Y+QG     WRE GRTEVI + LNPDFV+ FI+DYFFEE++ ++F++YD DS S +LS+HD++G++  ++G IVG  G R+ K  + +P             K  GTII+TAEE++  +D V MQFC  KLDK DFFGKSDPFL F R +EDGS+++ HKTEV+KNTLNP W AF +  + LCNGD  RTI V+ +DW+R+GSH  IG+F T+  +L+  G ++ + +++++P+KK KKK Y NSGT+ +LS  V  + SFLDYI+GG ++ F VAIDFTASNG+P  P SLHY +P + + Y  AL+A+G +++DYD+DK+FPA GFGAKLPP+  +SHEFALN NP NP+C GI+GV+ AYY S+ +VQLYGPTNF+PVIN  +  A  S++ G +QYF+LLI+TDG+I+DM +TKE+IV A+KLPMSIIIVGVG A+FDAM  LDGDDVR++  RG+ AERDIVQFVPFRDY+  S    +S  RLAKDVL E+P+Q +  M   G+K
Sbjct:   22 PATRVEVSVSCRNLLDRDTFSKSDPICVLYVQGVGNKEWREFGRTEVIDNTLNPDFVRKFILDYFFEERENLRFDLYDVDSKSPNLSKHDFLGQVFCTLGEIVGSQGSRLEKPIVGIPG------------KKCGTIILTAEELNCCRDAVLMQFCANKLDKKDFFGKSDPFLVFYRSNEDGSFTICHKTEVVKNTLNPVWQAFKISVRALCNGDYDRTIKVEVYDWDRDGSHDFIGEFTTSYRELS-RGQSQFNVYEVVNPKKKGKKKKYTNSGTVTLLSFLVETEVSFLDYIKGGTQINFTVAIDFTASNGNPAQPTSLHYMNPYQLNAYGMALKAVGEIVQDYDSDKMFPALGFGAKLPPDGRISHEFALNGNPQNPYCDGIEGVMEAYYRSLKSVQLYGPTNFAPVINHVARYA-SSVKDG-SQYFVLLIVTDGVISDMAQTKESIVNASKLPMSIIIVGVGPAEFDAMVELDGDDVRVSS-RGKYAERDIVQFVPFRDYIDRSGNHILSMARLAKDVLAEIPEQFLSYMRARGIK 545

The following BLAST results are available for this feature:

BLAST of TCONS_00005276 vs. Swiss-Prot (Human)

BLAST of TCONS_00005276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CPNE8	0.000e+0	55.93	Copine-8 OS=Homo sapiens GN=CPNE8 PE=1 SV=2	[more]

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TCONS_00005276 (transcript) - C. hemisphaerica