TCONS_00005360 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005360
Unique NameTCONS_00005360
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005360 ID=TCONS_00005360|Name=TCONS_00005360|organism=Clytia hemisphaerica|type=transcript|length=424bp
gacAGGTTCTCGACCGACAGATATCAATGACTGGGCGAAACAAGATTTCA
CGCCAACGCCTTTGAAATACACTTTCTCGCCCATTGTCAACCTCTTTCAA
GACAATTTTATCGAATATCGAAACATTAAGAACATTAATAACGAAACGGT
GAATTCAACAGCTATTCGTATGTGGTTTATACCATTGTATGATGATTACT
GTCATACTGCAGGCCTTGATTGTAAGAACCCCTCTGGATGTGGTTATGAT
GACACTTGCCCCATTGGTGCTATCTGCGAGTCTGGTTCAGTTCACGAATG
CCATTCTTGGAGTGATTGGGCTTGCTGGTCATGTGGTGGCACACCACGAG
AGAGACGAAAGCGTTATTGTGATGGCTGTTCTGATGGGGAAGAATTTCGT
GTTCCAAGTGATACATCCAAATGT
Run BLAST on NCBI

protein sequence of TCONS_00005360-protein

>TCONS_00005360-protein ID=TCONS_00005360-protein|Name=TCONS_00005360-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
TGSRPTDINDWAKQDFTPTPLKYTFSPIVNLFQDNFIEYRNIKNINNETV
NSTAIRMWFIPLYDDYCHTAGLDCKNPSGCGYDDTCPIGAICESGSVHEC
HSWSDWACWSCGGTPRERRKRYCDGCSDGEEFRVPSDTSKC
Run BLAST on NCBI

transcript from alignment at sc0000052:666682..667299-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005360 ID=TCONS_00005360|Name=TCONS_00005360|organism=Clytia hemisphaerica|type=transcript|length=618bp|location=Sequence derived from alignment at sc0000052:666682..667299- (Clytia hemisphaerica)
GACAGGTTCTCGACCGACAGATATCAATGACTGGGCGAAACAAGATTTCA
CGCCAACGCCTTTGAAATACACTTTCTCGCCCATTGTCAACCTCTTTCAA
GACAATTTTATCGAATATCGAAACATTAAGAACATTAATAACGAAACGGT
GAATTCAACAGCTATTCGTATGTGGTTTATACCATTGTATGATGATTACT
GTCATACTGCAGGCCTTGATTGTAAGAACCCCTCTGGATGTGGTTATGAT
GACACTTGCCCCATTGGTGCTATCTGCGAGTCTGGTTCAGTTCACGAATG
CCATTGTAAGTTGTTCAAAAATTCGTTTTAGTTTTAAGTGTTTCTGTTTC
ATATTAGACTGATATCTTTTAGTGTTATATCGTGTTCCATTTTCGTGCTG
AATAAACAAAAAAGAAGAATTTTCATTTCCTCTTCTGTTCAATCGTTTTA
TTAAAACTTATTCTAAACGATTTCATTTTACATCTTTCTTTTACTTTAGC
TTGGAGTGATTGGGCTTGCTGGTCATGTGGTGGCACACCACGAGAGAGAC
GAAAGCGTTATTGTGATGGCTGTTCTGATGGGGAAGAATTTCGTGTTCCA
AGTGATACATCCAAATGT

Coding sequence (CDS) from alignment at sc0000052:666682..667299-

>TCONS_00005360 ID=TCONS_00005360|Name=TCONS_00005360|organism=Clytia hemisphaerica|type=CDS|length=846bp|location=Sequence derived from alignment at sc0000052:666682..667299- (Clytia hemisphaerica)
CTTGGAGTGATTGGGCTTGCTGGTCATGTGGTGGCACACCACGAGAGAGA
CGAAAGCGTTATTGTGATGGCTGTTCTGATGGGGAAGAATTTCGTGTTCC
AAGTGATACATCCAAATGTACAGGTTCTCGACCGACAGATATCAATGACT
GGGCGAAACAAGATTTCACGCCAACGCCTTTGAAATACACTTTCTCGCCC
ATTGTCAACCTCTTTCAAGACAATTTTATCGAATATCGAAACATTAAGAA
CATTAATAACGAAACGGTGAATTCAACAGCTATTCGTATGTGGTTTATAC
CATTGTATGATGATTACTGTCATACTGCAGGCCTTGATTGTAAGAACCCC
TCTGGATGTGGTTATGATGACACTTGCCCCATTGGTGCTATCTGCGAGTC
TGGTTCAGTTCACGAATGCCATTCTTGGAGTGATTGGGCTTGCTGGTCAT
GTGGTGGCACACCACGAGAGAGACGAAAGCGTTATTGTGATGGCTGTTCT
GATGGGGAAGAATTTCGTGTTCCAAGTGATACATCCAAATGTACAGGTTC
TCGACCGACAGATATCAATGACTGGGCGAAACAAGATTTCACGCCAACGC
CTTTGAAATACACTTTCTCGCCCATTGTCAACCTCTTTCAAGACAATTTT
ATCGAATATCGAAACATTAAGAACATTAATAACGAAACGGTGAATTCAAC
AGCTATTCGTATGTGGTTTATACCATTGTATGATGATTACTGTCATACTG
CAGGCCTTGATTGTAAGAACCCCTCTGGATGTGGTTATGATGACACTTGC
CCCATTGGTGCTATCTGCGAGTCTGGTTCAGTTCACGAATGCCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003044XLOC_003044Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005360-proteinTCONS_00005360-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005360-exon-sc0000052-1575043694:666995..667299TCONS_00005360-exon-sc0000052-1575043694:666995..667299Clytia hemisphaericaexon
TCONS_00005360-exon-sc0000052-1575043694:666682..666800TCONS_00005360-exon-sc0000052-1575043694:666682..666800Clytia hemisphaericaexon
TCONS_00005360-exon-sc0000052-1510915933:666995..667299TCONS_00005360-exon-sc0000052-1510915933:666995..667299Clytia hemisphaericaexon
TCONS_00005360-exon-sc0000052-1510915933:666682..666800TCONS_00005360-exon-sc0000052-1510915933:666682..666800Clytia hemisphaericaexon
TCONS_00005360-exon-sc0000052-1491911889:666995..667299TCONS_00005360-exon-sc0000052-1491911889:666995..667299Clytia hemisphaericaexon
TCONS_00005360-exon-sc0000052-1491911889:666682..666800TCONS_00005360-exon-sc0000052-1491911889:666682..666800Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:666682..667299 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.65013	0.160913	0.186836	0	0.445058	0.351691	1.2729	1.39029	1.25148	2.75583	0	0.659385	3.73132	4.90076	13.118	5.22881	0.247749	1.52361	2.98201	1.46845	0	0	0.756801	0.688042	0.885834	1.10682	0.226265	0	0.549454	0.186602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top