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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005479 ID=TCONS_00005479|Name=TCONS_00005479|organism=Clytia hemisphaerica|type=transcript|length=2974bpRun BLAST on NCBI protein sequence of TCONS_00005479-protein >TCONS_00005479-protein ID=TCONS_00005479-protein|Name=TCONS_00005479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp MVLLAAAVCSKNGKALVSRQFVEMSRSRIEGILSAFPKLMNTGKQHTFVERun BLAST on NCBI transcript from alignment at sc0000053:304338..318655- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005479 ID=TCONS_00005479|Name=TCONS_00005479|organism=Clytia hemisphaerica|type=transcript|length=14318bp|location=Sequence derived from alignment at sc0000053:304338..318655- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000053:304338..318655- >TCONS_00005479 ID=TCONS_00005479|Name=TCONS_00005479|organism=Clytia hemisphaerica|type=CDS|length=1539bp|location=Sequence derived from alignment at sc0000053:304338..318655- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005479 vs. Swiss-Prot (Human)
Match: COPD (Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE=1 SV=1) HSP 1 Score: 623.239 bits (1606), Expect = 0.000e+0 Identity = 316/516 (61.24%), Postives = 397/516 (76.94%), Query Frame = 2
Query: 701 MVLLAAAVCSKNGKALVSRQFVEMSRSRIEGILSAFPKLMNTGKQHTFVETESVRYVYQPLDKLFMLLITTKASNILEDLETLRLFSRVVPEYCKVLDDNEILENSFPLIFAFDEIVALGYRENVNLANIRTFIEMDSHEERVINAVRKTQELEAKEQMKRKAKELQAQRIAAXXXXXXXXXXXXNQSGSSTGGYPTRQDNTPSVGDVATPVETPATKSYPSRPAXXXXXXXXXXXXXDIDSFVDKLREEG-TVVSASMKQTAKTAP---TPSVPMSSIHIKIEEKVMLTAGRHGGLQNMEVRGIVLLRITDPNMSKITIPYTNNDSKGFQMQTHPNVDKKQFNSNSVIGLKSGGKGFPVNNEIGVVKWRLQTKDEDMIPLTINCWPNENGDDCEVTIEYELQAKDLELNDVVIYIPVPSGVGAPTIGEMDGDYHFDARKSVLEWKMPVIDSSNPSGSMEFTISGVPDDFFPVNVSFYSTKTICDFDINDVQQAETKSPAKFSQERALIVEKYEVV 2236
MVLLAAAVC+K GKA+VSRQFVEM+R+RIEG+L+AFPKLMNTGKQHTFVETESVRYVYQP++KL+M+LITTK SNILEDLETLRLFSRV+PEYC+ L++NEI E+ F LIFAFDEIVALGYRENVNLA IRTF EMDSHEE+V AVR+TQE EAK +M+RKAKELQ R A + GFGG S + +GG T T ++ + P PA P+RP+G KA+KLG K K++D+FVDKL+ EG T++S+SM + A P + M S+H+KIEEK+ LT GR GGLQNME+ G+++LRI+D +I + N D KG Q+QTHPNVDKK F + S+IGLK+ K FPVN+++GV+KWRLQT +E IPLTINCWP+E+G+ C+V IEYELQ +LELNDVVI IP+PSGVGAP IGE+DG+Y D+R++ LEW +PVID+ N SGS+EF+I+G P+DFFPV VSF S K C+ + V Q + SP +FS E +V+KYE++
Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPGFGGFGSSAVSGG-STAAMITETIIETDKPKVAPA----PARPSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSSSMGKRTSEATKMHAPPINMESVHMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKYGRIRLHVENEDKKGVQLQTHPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSIAGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511 The following BLAST results are available for this feature:
BLAST of TCONS_00005479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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