TCONS_00005589 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005589
Unique NameTCONS_00005589
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005589 ID=TCONS_00005589|Name=TCONS_00005589|organism=Clytia hemisphaerica|type=transcript|length=1602bp
TTCGAGAAAGTTTTCAATATTGTACAAAAACTGTGTTTTCAGTTATAGTT
TCCCTTTCATATCATTAACTGACATTTGACGCACAGTACGCACAATTGGA
CATGTTGTTTCAGTACGTAGCTTTTCTAGCAGTTTGTGCAGCGTCAGCAT
CTCCTAATCCATGTCTACATAAAGGATGCCCTTTAAAGGGAGGTCTCAAT
CTTCGAGATGTAAAACGAATGACATCGTCGCGACCAAATATTctaaacaa
tagcaacaatctCAATATTTTACAATGGAATATTCTGTATGATAAAGTCA
AAAATACGTCGGATAGTTGGTTATTCAGAAAAGACTTTGTATGTGATTAT
ATTAATGCTGTAAATCCTGATATCATGGGTTTACAAGAAGTTATGGAGAG
CCAACTTGTTGAGCTTCAACAATGTCTACCACACTATCACATCTTTGGTG
AGCAAAGAGATTCTGTTCCCAATGCGCTGTATAATCCAATCTTGGTCAAA
CGATCACCAAAGATGAGAGTCACACGTACTGGAACCTTCTGGTTAAGTTT
GATACCAGATATTAAAGGTTCAAAAGCTCCAACTTCCAAAGAACCTCGAA
TTTGCACATGGGTTGAAATTGACAATGGTTCCACAAAACCATTCATCGTT
GCAACAACTCATCTAGCATGGCGATCACAAAAAACTGCTGCAAATCAAAT
CTCAATACTTATCCAACATCTTCAATCAAATATCCTTCAAGATGCCAAAC
AACCACTTGTGGTAACAGGTGATTTCAATTGGGAAAGTAACTCCACAGTA
TATACCACCATGAAAGAAGCTGGATTCTCCAACACCATGCTTGATTCTCA
GTTCGTATTCCCAGCGCTGACAGCTCTTCCACCTTATCCTGGCTTAATTG
ACTACGTTTGGCAACAAGGATTCAATAGTCTTTTCTCGGCTACTTTGATG
GACAATCGTCCAGATAATGGTCGTTATTTATCAGATCACAGACCTGTTTT
GGCAATTCTTAGGGTGTAAATAGGAATATTATGTTTCCACCATTTCTAAT
ACAGCTTAAAAAAGTATCTTTTAAGATCAATTTGAATGTGTCATGTAgta
ttttgaagtattttgatacacccctgtgtcacaaacccgctgggacccct
accccactggaaaatttaacgaaaatttcgtccccggtgggaaaataccc
tggaattttagccccactggaaaatttactttgttttcatccccactcga
aattccatgtttacaaattgcacttcaaaacNAAATACCCTGGATtttta
gccccactggaaaatttactttgttttcatccccactcgaaattccatgt
ttacaaattgcacttcaaaaccatcgccactttttaaccttggaacaata
gaatttctattcccattgggatttcaataggaatttttatccccattgag
gaaAAGAGTTCagtcggggctgtgagacaggagtgtttTGATATCTTGAT
CACAAGTTATTAAGCTACAGTTTGATGNtcggggctgtgagacaggagtg
tttTGATATCTTGATCACAAGTTATTAAGCTACAGTTTgatgaaaaacag
aa
Run BLAST on NCBI

protein sequence of TCONS_00005589-protein

>TCONS_00005589-protein ID=TCONS_00005589-protein|Name=TCONS_00005589-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
MLFQYVAFLAVCAASASPNPCLHKGCPLKGGLNLRDVKRMTSSRPNILNN
SNNLNILQWNILYDKVKNTSDSWLFRKDFVCDYINAVNPDIMGLQEVMES
QLVELQQCLPHYHIFGEQRDSVPNALYNPILVKRSPKMRVTRTGTFWLSL
IPDIKGSKAPTSKEPRICTWVEIDNGSTKPFIVATTHLAWRSQKTAANQI
SILIQHLQSNILQDAKQPLVVTGDFNWESNSTVYTTMKEAGFSNTMLDSQ
FVFPALTALPPYPGLIDYVWQQGFNSLFSATLMDNRPDNGRYLSDHRPVL
AILRV
Run BLAST on NCBI

transcript from alignment at sc0000054:479052..482787+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005589 ID=TCONS_00005589|Name=TCONS_00005589|organism=Clytia hemisphaerica|type=transcript|length=3736bp|location=Sequence derived from alignment at sc0000054:479052..482787+ (Clytia hemisphaerica)
TTCGAGAAAGTTTTCAATATTGTACAAAAACTGTGTTTTCAGTTATAGTT
TCCCTTTCATATCATTAACTGACATTTGACGCACAGTACGCACAATTGGA
CATGTTGTTTCAGTACGTAGCTTTTCTAGCAGTTTGTGCAGCGTCAGCAT
CTCCTAATCCATGTCTACATAAAGGATGCCCTTTAAAGGGAGGTAAGctg
atttttatcatttttcaatcATCTTCAATTACCAAAATCAAGCTTGTAGA
TTGACACTCTGAAAATAAgagaattttcaaataattttaacTAAATTGAA
NatttttatcatttttattctTCAATCACCAAAATCAAGCTTGTAGATTG
ACACTCTGAAAATAAgagaattttcaaataattttaacTAAATTGAATAA
TGATAAttatgggccattccatttcatGCCCATACAGGGCGgaggacgaa
catttccagggggtatttcgaagaagaatttccaggcaGTCTAAGGGAAG
ATTTTAGGAGGTAAAAATTTATACTAAATTTTCCAGGGAGTAAAAGACTG
actttagttcgtccaccctcactttttagtatgaaaatttttttgagtct
tttggcaaattttgctattttccagGGGACATCCACGTATtatttttggc
ttgaaaaggtttgtccaCTCCCTCATGTATGGATTTTAAGAAACAGTCCA
ATGACATTTGTCAGAAATCTGTTAGAAAGAAAATATATGTatttagaaaa
ttcaaaaatagaaatcacaaaaaaattgggccgaaaaaaaaatcctaaaa
aagaTACCTTAAGTGAATAAAATTAATATTTGAGGGGACTATTTCAGTTC
AAGTCCCAATTTACCGATATTACATTCATGGCAAATTTTATAAAGTTGAT
CAATCGCCAAATTTGATCTCCGTCAAAAATAATGTTTGGGGAACTGGCCA
AATTAAATTCACGCTGGGATTAATATCTATTTAACTGTATTTCATAAAAT
CATCTTTTTTTAGGTCTCAATCTTCGAGATGTAAAACGAATGACATCGTC
GCGACCAAATATTctaaacaatagcaacaatctCAATATTTTACAATGGA
ATATTCTGTATGATAAAGTCAAAAATACGTCGGATAGTTGGTTATTCAGA
AAAGACTTTGTATGTGATTATATTAATGCTGTAAATCCTGATGTAAGTAT
ATACCCTCGTTTTTCgcctttttcaacttttttgaaaagtaatgttttaC
CATTTcgaccataacttttgatctagtagaccaaatttgacaaatgaccc
ctcataatttaagtttatCCTTTCTCTTTCCAAAACCAAAAGATTGATTC
CTTAACAGTTgatagagctcgagaaaattcactttaaagagGGAGGCTTT
TTTCTGGAACGCCCAGTAACTTCAATTTCTAAGTTAAAAATAATACACTA
ATGCCTTACAGCAATCATCAACCATTGCATTATTCTTTATATGTTACCTG
CATTTTCCCCGGCTGATACCCCTGGATTTCAATTATCCTTTTAGGTTGAT
GAATGTTAAAAAGTAagattttagccgtttttgcaaaattcaatgaaaat
cctagcctagaaatctaagctagtttgattcattcaccaggataaatctg
atggtaagtaagttgtgactgaataacactatcaaaggcaaacttaaaat
cagtaaatatgaaaaatctttaaagcgccgataacgctatattgccataa
gccgtgtgtcctagctttgtgaatacgggcttagttgaCTAGGCTATGAA
AATCTGTGCTTAAATCAAAATGAAAGAattgtaaaaaatctttcttgCGA
AATGCAATTCGAATGCTCTTTCATTTGCAAACTTTCTTCTTGCAAAATGT
ATAAAAATTCTCACCCTTAAATTAACCAAATCTAACCATAGATCATGGGT
TTACAAGAAGTTATGGAGAGCCAACTTGTTGAGCTTCAACAATGTCTACC
ACACTATCACATCTTTGGTGAGCAAAGAGATTCTGTTCCCAATGCGCTGT
ATAATCCAATCTTGGTCAAACGATCACCAAAGATGAGAGTCACACGTACT
GGAACCTTCTGGTTAAGTTTGATACCAGATATTAAAGGTTCAAAAGGTGA
GGATATATATGAAAgtttagtctgaatcgcagccctctatagatatactt
cctatctataagaaacttttttcgctaggaggatgagcagaagcctacta
GCCAAAGTTGTAACATccatgtgtcacagacccgatgGGACCCCTACCCC
ACTAGAAAATTgggcaaaatatttaatatatatCCCACAGTGGGAAATTG
ACTTATCCTTTTCGTATATACCTTGAGTATAAACTTTGTTAGTATtcgac
ccttggacccttaccgggactaaaaaggagaaaacaaagaaaattttgtg
aatattacgacccttattgggacaaatttgaccaattttgaccaaatttc
gatccttccggtggtaaaaagttgaaattttcctatttctccgaccctta
gtggggctttggaaatcaaaaaaggtacccttaagggcggaaCATACCGT
ATCCTCCATttgggtaaaaaaaaattcaaaacttcgtATTTCTTAAGCTC
CANCACATACCGTAACCTCCATttgggtaaaaaaaaattcaaaacttcgt
ATTTCTTAAGCTCCAACTTCCAAAGAACCTCGAATTTGCACATGGGTTGA
AATTGACAATGGTTCCACAAAACCATTCATCGTTGCAACAACTCATCTAG
CATGGCGATCACAAAAAACTGCTGCAAATCAAATCTCAATACTTATCCAA
CATCTTCAATCAAATATCCTTCAAGATGCCAAACAACCACTTGTGGTAAC
AGGTGATTTCAATTGGGAAAGTAACTCCACAGTATATACCACCATGAAAG
AAGCTGGATTCTCCAACACCATGCTTGATTCTCAGTTCGTATTCCCAGCG
CTGACAGCTCTTCCACCTTATCCTGGCTTAATTGACTACGTTTGGCAACA
AGGATTCAATAGTCTTTTCTCGGCTACTTTGATGGACAATCGTCCAGATA
ATGGTCGTTATTTATCAGATCACAGACCTGTTTTGGCAATTCTTAGGGTG
TAAATAGGAATATTATGTTTCCACCATTTCTAATACAGCTTAAAAAAGTA
TCTTTTAAGATCAATTTGAATGTGTCATGTAgtattttgaagtattttga
tacacccctgtgtcacaaacccgctgggacccctaccccactggaaaatt
taacgaaaatttcgtccccggtgggaaaataccctggaattttagcccca
ctggaaaatttactttgttttcatccccactcgaaattccatgtttacaa
attgcacttcaaaacNAAATACCCTGGATttttagccccactggaaaatt
tactttgttttcatccccactcgaaattccatgtttacaaattgcacttc
aaaaccatcgccactttttaaccttggaacaatagaatttctattcccat
tgggatttcaataggaatttttatccccattgaggaaAAGAGTTCagtcg
gggctgtgagacaggagtgtttTGATATCTTGATCACAAGTTATTAAGCT
ACAGTTTGATGNtcggggctgtgagacaggagtgtttTGATATCTTGATC
ACAAGTTATTAAGCTACAGTTTgatgaaaaacagaa

Coding sequence (CDS) from alignment at sc0000054:479052..482787+

>TCONS_00005589 ID=TCONS_00005589|Name=TCONS_00005589|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0000054:479052..482787+ (Clytia hemisphaerica)
ATGTTGTTTCAGTACGTAGCTTTTCTAGCAGTTTGTGCAGCGTCAGCATC
TCCTAATCCATGTCTACATAAAGGATGCCCTTTAAAGGGAGGTCTCAATC
TTCGAGATGTAAAACGAATGACATCGTCGCGACCAAATATTctaaacaat
agcaacaatctCAATATTTTACAATGGAATATTCTGTATGATAAAGTCAA
AAATACGTCGGATAGTTGGTTATTCAGAAAAGACTTTGTATGTGATTATA
TTAATGCTGTAAATCCTGATATCATGGGTTTACAAGAAGTTATGGAGAGC
CAACTTGTTGAGCTTCAACAATGTCTACCACACTATCACATCTTTGGTGA
GCAAAGAGATTCTGTTCCCAATGCGCTGTATAATCCAATCTTGGTCAAAC
GATCACCAAAGATGAGAGTCACACGTACTGGAACCTTCTGGTTAAGTTTG
ATACCAGATATTAAAGGTTCAAAAGCTCCAACTTCCAAAGAACCTCGAAT
TTGCACATGGGTTGAAATTGACAATGGTTCCACAAAACCATTCATCGTTG
CAACAACTCATCTAGCATGGCGATCACAAAAAACTGCTGCAAATCAAATC
TCAATACTTATCCAACATCTTCAATCAAATATCCTTCAAGATGCCAAACA
ACCACTTGTGGTAACAGGTGATTTCAATTGGGAAAGTAACTCCACAGTAT
ATACCACCATGAAAGAAGCTGGATTCTCCAACACCATGCTTGATTCTCAG
TTCGTATTCCCAGCGCTGACAGCTCTTCCACCTTATCCTGGCTTAATTGA
CTACGTTTGGCAACAAGGATTCAATAGTCTTTTCTCGGCTACTTTGATGG
ACAATCGTCCAGATAATGGTCGTTATTTATCAGATCACAGACCTGTTTTG
GCAATTCTTAGGGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003173XLOC_003173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005589-exon-sc0000054-1491911889:479052..479243TCONS_00005589-exon-sc0000054-1491911889:479052..479243Clytia hemisphaericaexon
TCONS_00005589-exon-sc0000054-1510915933:479052..479243TCONS_00005589-exon-sc0000054-1510915933:479052..479243Clytia hemisphaericaexon
TCONS_00005589-exon-sc0000054-1575043694:479052..479243TCONS_00005589-exon-sc0000054-1575043694:479052..479243Clytia hemisphaericaexon
TCONS_00005589-exon-sc0000054-1491911889:480065..480243TCONS_00005589-exon-sc0000054-1491911889:480065..480243Clytia hemisphaericaexon
TCONS_00005589-exon-sc0000054-1510915933:480065..480243TCONS_00005589-exon-sc0000054-1510915933:480065..480243Clytia hemisphaericaexon
TCONS_00005589-exon-sc0000054-1575043694:480065..480243TCONS_00005589-exon-sc0000054-1575043694:480065..480243Clytia hemisphaericaexon
TCONS_00005589-exon-sc0000054-1491911889:480993..481197TCONS_00005589-exon-sc0000054-1491911889:480993..481197Clytia hemisphaericaexon
TCONS_00005589-exon-sc0000054-1510915933:480993..481197TCONS_00005589-exon-sc0000054-1510915933:480993..481197Clytia hemisphaericaexon
TCONS_00005589-exon-sc0000054-1575043694:480993..481197TCONS_00005589-exon-sc0000054-1575043694:480993..481197Clytia hemisphaericaexon
TCONS_00005589-exon-sc0000054-1491911889:481762..482787TCONS_00005589-exon-sc0000054-1491911889:481762..482787Clytia hemisphaericaexon
TCONS_00005589-exon-sc0000054-1510915933:481762..482787TCONS_00005589-exon-sc0000054-1510915933:481762..482787Clytia hemisphaericaexon
TCONS_00005589-exon-sc0000054-1575043694:481762..482787TCONS_00005589-exon-sc0000054-1575043694:481762..482787Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005589-proteinTCONS_00005589-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:479052..482787 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.55358	1.39081	1.18231	0.705309	0.41215	0.352827	0.851341	0.858324	0.558009	0.478512	0.696683	0.203543	60.5546	67.2315	32.5682	57.0199	8.31684	12.4242	95.0015	74.4529	72.0758	75.5953	31.5671	47.2543	106.069	99.1547	0.768295	1.11811	16.0563	18.9221
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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