|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005600 ID=TCONS_00005600|Name=TCONS_00005600|organism=Clytia hemisphaerica|type=transcript|length=2751bp
tttacggcacttacaaccaatcagctgttgggtccgtgatgtaatgtcag
aagacattgcagtggtgcatatcacgaatagatcttatcagagtttttga
tttttcttaaagagcgatgcattgtgggattgtttcggggtattacaata
gaaattacttaggaattcctcgatggaattttattgtaatacccccaaaa
caatcccacaatgcatcgctgttttagaaaaatcaaaaactcggataagg
tctattgaaagAGTGATGattttacagataaaaaaaatgtgGTATTTTCT
ATTGCTAACAAAAGTTGCATTCGTGTATTCTCAATGGTACTTGGgcgaag
aaaaacaacaaacaacaacaaatattGATGTAGAGGATGCTTCAAAACCT
GTCCCTACAAAATCAGCAATCCAATGTATTTTGAAATGTCAACGAAGACT
AAGGGCGAGTTATTTTGTGGAAAATACCAATCAATGCTTTTGTGTTTTGA
GTAAAAATGACAAGTTGGTTTCCAATGAAAATGGAACTTTGAATGGCACT
TTTTATGAACAGAGTGACTTGGAGAAATGCGTTGCAAAGACGTGCGAAGA
AGTGAAAACAATTTGCCCAGAATGCGAACCCGATTTTTATAATCTGGAAA
TTAATGGAGAACAAACAAAGAAGTTTTGTGATTTCGATTTCAGAACACCA
GAGGAAAAATTATCATCGTGTTTGGATGTCTGTGCGCAAACATGTTCGAG
CGACGCCTACCGTACTGATAAGGGTTGTGCTCAAATGTATCATTGTCCAC
ATGGTTGTAAAATGAGAGAACTTGGATTAGCCGATCTCGAATGTAAATCG
AATTGTCAACGAACTATCAATTCAGGGTGCAGCACTATTGTCAATGGTTG
GGTTTTTAATTTATGTTCATCATGTGGGCGCGATGGCTGCTCATCTAATA
TGCCCGCAATCACCGAATGTGAAACCGGTTGCACTAGCTTTTAGAATCAA
TCCACctatttttttttctgtaagaACAAATTGACTTTTTGGCGTGGATT
AGGAACTTTTAatattgttcttattaaaaacattataataataaaacaaa
ggtactctcgggtatctaatagacgggggtttggaataagtaGGGGGGTT
GGAACAGATTAATAagagggggggttggaataggaatgtcctgggtggaa
aattttcgaaaaattaattagcggcccCCGGCTatcaggtacccgagagt
atatgAGCGCTTCCGATCGGCATATAAGTGTCCGATCCATCATTATGTGC
CCCCCCATGCAGACATTTTCTTTCTACAAATACTAAACCTCCAAAGCTTG
GGAAAATTTCAACATCCGAAAGGTTTATTTTGCGAGGGGATTGTCGGTTC
TAGCTGCATTTCTTCAGTATTTACGGATTAGAGCGGTTTAGCACAAAAGG
GGATGCAGAATATTAAAACGCGACAACCATTTCTCTCCGATGCAAAATTG
GCCATCTCCTTTAGAGTTTTAGCGGGGCGGCCGAAAATTCGCCATAGGGA
TATCACGTAGTTCAACTAACATTAATTGGAAGTTACGTACGTTGGTCGAg
ggacaaagtaatgagccattCCGGGACTAGGCAAACAGTAGACTAGTGGA
GTCTGCTTCTGATtaaactttgctttctgatgattttgatggcgccgctg
agtccagtgaagtagactagaggatatcgccatcttgaattttttcactt
tcgttttcaaaaattatatgcaaaaaatcaaaacaataaaatgttttcta
aaattccATCAAAGTTTAGGAAactataataaaataaaaacaagaaaata
cctCCAAATTGGTCTATTGGTCATGGTTTTCTGTtcgtttttcttcaaaa
aaaggactggatctagtggtaCGGATACCTTGGTACCTACCACCTCGAGC
AAAGCAAAAAAATGGAGCCTGCCAAGTTACACCAgaccacttatcagcgc
catccagtctatcaaaaaccCCGGGCTAGGCAAACAGtagaaacatgttt
ttttttcacggCGACATGCTTAATGATGGGTGTAAGACAAAGTGCGTAAg
atgaaaatttcaacaaatgatttgaatatatttaatttaTGAATGCACGA
CACATTGAATAAGTAAATAAAGTAttgttttttcttatataaaaacatat
aaaaaaggACTATCATGATGGGAAAATCCCTCATTTAACCCACATTTTAT
TAGGCTTAACGGTAATCTCTGCCACTAGCttgatcgggaagattcttccg
aattGGAAAGAAACTTATCGAACGGTAAGAGTAATAAGCAAGAATTTTGT
AGAATATTATCTGCGCCCCCTTTGGGAAGATTCTGTCTCAGCGGgaagtt
gaaactttttcacAAATGACAAATTCCtatctaaaatgttgaaaaaaaga
tGGCCTTATTATctacaaataaaaaagttaaattcttAAGtcgttcttaa
tattttggccattgaaggcTTTTTATGTTCTTAGCTtgtacttataaaaa
aacgtgtatatgttATGtattatacaccttttcgaccgtagccgcttATT
TCCGCGCGGGCACTTTTTGTTATGAatttaaaagatttgaaaatatatat
ataaaacacGTGAAACTTACTGTGCTTTTTTCTTTCCTTGCGTATTTCCT
CTCTAGCAACTTTCTTTGCTTTTGTCCAGTTTTGAGCTGCTCTTTCCTGC
T Run BLAST on NCBI protein sequence of TCONS_00005600-protein >TCONS_00005600-protein ID=TCONS_00005600-protein|Name=TCONS_00005600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MEFYCNTPKTIPQCIAVLEKSKTRIRSIERVMILQIKKMWYFLLLTKVAF
VYSQWYLGEEKQQTTTNIDVEDASKPVPTKSAIQCILKCQRRLRASYFVE
NTNQCFCVLSKNDKLVSNENGTLNGTFYEQSDLEKCVAKTCEEVKTICPE
CEPDFYNLEINGEQTKKFCDFDFRTPEEKLSSCLDVCAQTCSSDAYRTDK
GCAQMYHCPHGCKMRELGLADLECKSNCQRTINSGCSTIVNGWVFNLCSS
CGRDGCSSNMPAITECETGCTSF Run BLAST on NCBI transcript from alignment at sc0000054:712246..717396+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005600 ID=TCONS_00005600|Name=TCONS_00005600|organism=Clytia hemisphaerica|type=transcript|length=5151bp|location=Sequence derived from alignment at sc0000054:712246..717396+ (Clytia hemisphaerica)
tttacggcacttacaaccaatcagctgttgggtccgtgatgtaatgtcag
aagacattgcagtggtgcatatcacgaatagatcttatcagagtttttga
tttttcttaaagagcgatgcattgtgggattgtttcggggtattacaata
gaaattacttaggaattcctcgatggaattttattgtaatacccccaaaa
caatcccacaatgcatcgctgttttagaaaaatcaaaaactcggataagg
tctattgaaagAGTGATGattttacagataaaaaaaatgtgGTATTTTCT
ATTGCTAACAAAAGTTGCATTCGTGTATTCTCAATGGTACTTGGgcgaag
aaaaacaacaaacaacaacaaatattGATGTAGAGGATGCTTCAAAACCT
GTCCCTACAAAATCAGCAATCCAATGTATTTTGAAATGTCAACGAAGACT
AAGGGCGAGTTATTTTGTGGAAAATACCAATCAATGCTTTTGTGTTTTGA
GTAAAAATGACAAGTTGGTTTCCAATGAAAATGGAACTTTGAATGGCACT
TTTTATGAACAGAGTGACTTGGAGGTATAGTTATTTTATCTTAAGTCAGG
CCAATCTAATTAAAAATATAGGGGAATTTGATGAAAATAGAGAAATGAGT
TCACGTATTGTGAAACGGCCAGCTAGAGTGATTACTTCTATTATCTATta
acttttttcgcaaaaatcaatCTCCTCGCAAAAATCTATCCAATTGGGTA
GCAacataagaaaaaaattgatactttAACGGTGGTGCTCTGTTTGTGTG
GGACTCCGAAGATGACGTTCattagatttagaacgccatggctCCGAGCC
GTTCAAAGATAAAGAGTCACTTTCTTTAGCGACCAAATTCTCATTTTTGT
CTAGAAATGCGTTGCAAAGACGTGCGAAGAAGTGAAAACAATTTGCCCAG
AATGCGAACCCGATTTTTATAATCTGGAAATTAATGGAGAACAAACAAAG
AAGTTTTGTGATTTCGATTTCAGAACACCAGAGGGTAAGAAGTGTCTTAG
CTTGCAGAAAAAGAGTGNcaaaaaaataagcacatccaggctcagccaaa
ttttagatgttctaataaaaaaaaaacgtgtacctttgTATCTGATATCt
gattttctcctttttttcccGGACACCCTAGTATATATTAAACTAGCCGT
ATCGCTCTGTTGGGAGTTCAATATTATCATGGCACCACGCCCCCAAAAAA
AGGGATGGATgtagaaagttttaaagctcaaaatgtctgatatttttatt
ttcgaacCCATccgaaattttaaacttttcaagCATTGAGCCTGAAaaag
ttcttaaattgttcttacttCCACCGTATTGCGAGTATTTTGGGTGTTAT
AGAATATGAAAACCCTTAAAATGTttataacttgttcttaatattttgac
catcgaagcttCATGTTcttacatacacgtttttttatgaggaACCTTTA
CTTGGTTCCAAGCCTGAAGTTCCTTATTACTTAGACTTAGCTGTTAAGAT
TGGATTTAATAAGCATGTAACTTATGTATAAGTATAACAATTGACTACAG
CACAGAAAAAGACGTTCGTTGAATGTTGTTtcgtcaatatttttttatat
ttttgtttaggTTTTTGTAAATGTGTGCAACTTCAAGTATAAATTCTCTG
TTCCTtaacttgttttctttttctccgCCTGAGCatttccttaacaattc
cttatttttaggatcattttcagcctcaagttcttTAGAAACGTGTTCCT
TGTAAAAAAGACGTGTAGtctgttcttatagaaaaaggtGTGTATTAAGA
AAGCAATGATGGTTCGGATATGTTACTTTATAGAAAAATTATCATCGTGT
TTGGATGTCTGTGCGCAAACATGTTCGAGCGACGCCTACCGTACTGATAA
GGTAAGATGTCTTCACTGTATTTCATGTGAAAAGAACAACGCATTTTAAT
AGCAGGAAAAAATATACCATTATAAAAATAGTTAGTTGcacagaaatttt
tcaaaatatttttgtgcattttatgatgatgatgaggtctaatttcatta
aaaaagggGAATGCAGTGGGATTCCAAAGGGTAGTCAAATCTCCATCCAT
CCTTTAACGACCGATGACGAAATATCTTGTCATTGTCGCGTTCCATGCAT
GACGAGATATCTCGTATGCGGATACTGTCCCAAGTATACCAAAAAAGTCC
AGCTAccaaagcaaaatatcaaaaattgcaaaaaaaaggtATTGCTTATT
TTAATCATGCTGATATGagtcttttttataattttcccgACCATTTTCTC
GATGTTATTTTATCCctgacaatttttttaatataaatacCCTTTTATTA
ACAGCGACTCTTTCCCCAAAATTCCATGTTTTTTGTTCTTGTCTCGCAGT
CGGGAACCCCTAAAGTACTTTCTGCCGAATTATTTCGTCATTCAGTCTTT
TTTGCACGGCTCGCGAAAAACCGCGATATTTTACCAGCCCACCTGCGAAG
AAAGGCTCTGTATTTTTTTGAGCAGTTACTTCAAAAGGCCAAGGTATTTC
AAGcacggaaaaatgaaagacGCAGTCGTTAGAGGATTAAAAATATCTAT
ATTCAACGGAggtaattatttcaaaataaacagaaaatcaaaaaaccagT
AACATTTGAAATACTTATTTTTTCAAGGGTTGTGCTCAAGTGTATCATTG
TCCACATGGTTGTNtcttttttataattttcccgACCATTTTCTCGATGT
TATTTTATCCctgacaatttttttaatataaatacCCTTTTATTAACAGC
GACTCTTTCCCCAAAATTCCATGTTTTTTGTTCTTGTCTCGCAGTCGGGA
ACCCCTAAAGTACTTTCTGCCGAATTATTTCGTCATTCAGTCTTTTTTGC
ACGGCTCGCGAAAAACCGCGATATTTTACCAGCCCACCTGCGAAGAAAGG
CTCTGTATTTTTTTGAGCAGTTACTTCAAAAGGCCAAGGTATTTCAAGca
cggaaaaatgaaagacGCAGTCGTTAGAGGATTAAAAATATCTATATTCA
ACGGAGgcaattatttcaaaataaacagaaaatcaaaaaaccagTAACAT
TTGAAATACTTATTTTTTCAAGGGTTGTGCTCAAATGTATCATTGTCCAC
ATGGTTGTAAAATGAGAGAACTTGGATTAGCCGATCTCGAATGTAAATCG
AATTGTCAACGAACTATCAATTCAGGGTGCAGCACTATTGTCAATGGTTG
GGTTTTTAATTTATGTTCATCATGTGGGCGCGATGGCTGCTCATCTAATA
TGCCCGCAATCACCGAATGTGAAACCGGTTGCACTAGCTTTTAGAATCAA
TCCACctatttttttttctgtaagaACAAATTGACTTTTTGGCGTGGATT
AGGAACTTTTAatattgttcttattaaaaacattataataataaaacaaa
ggtactctcgggtatctaatagacgggggtttggaataagtaGGGGGGTT
GGAACAGATTAATAagagggggggttggaataggaatgtcctgggtggaa
aattttcgaaaaattaattagcggcccCCGGCTatcaggtacccgagagt
atatgAGCGCTTCCGATCGGCATATAAGTGTCCGATCCATCATTATGTGC
CCCCCCATGCAGACATTTTCTTTCTACAAATACTAAACCTCCAAAGCTTG
GGAAAATTTCAACATCCGAAAGGTTTATTTTGCGAGGGGATTGTCGGTTC
TAGCTGCATTTCTTCAGTATTTACGGATTAGAGCGGTTTAGCACAAAAGG
GGATGCAGAATATTAAAACGCGACAACCATTTCTCTCCGATGCAAAATTG
GCCATCTCCTTTAGAGTTTTAGCGGGGCGGCCGAAAATTCGCCATAGGGA
TATCACGTAGTTCAACTAACATTAATTGGAAGTTACGTACGTTGGTCGAg
ggacaaagtaatgagccattCCGGGACTAGGCAAACAGTAGACTAGTGGA
GTCTGCTTCTGATtaaactttgctttctgatgattttgatggcgccgctg
agtccagtgaagtagactagaggatatcgccatcttgaattttttcactt
tcgttttcaaaaattatatgcaaaaaatcaaaacaataaaatgttttcta
aaattccATCAAAGTTTAGGAAactataataaaataaaaacaagaaaata
cctCCAAATTGGTCTATTGGTCATGGTTTTCTGTtcgtttttcttcaaaa
aaaggactggatctagtggtaCGGATACCTTGGTACCTACCACCTCGAGC
AAAGCAAAAAAATGGAGCCTGCCAAGTTACACCAgaccacttatcagcgc
catccagtctatcaaaaaccCCGGGCTAGGCAAACAGtagaaacatgttt
ttttttcacggCGACATGCTTAATGATGGGTGTAAGACAAAGTGCGTAAg
atgaaaatttcaacaaatgatttgaatatatttaatttaTGAATGCACGA
CACATTGAATAAGTAAATAAAGTAttgttttttcttatataaaaacatat
aaaaaaggACTATCATGATGGGAAAATCCCTCATTTAACCCACATTTTAT
TAGGCTTAACGGTAATCTCTGCCACTAGCttgatcgggaagattcttccg
aattGGAAAGAAACTTATCGAACGGTAAGAGTAATAAGCAAGAATTTTGT
AGAATATTATCTGCGCCCCCTTTGGGAAGATTCTGTCTCAGCGGgaagtt
gaaactttttcacAAATGACAAATTCCtatctaaaatgttgaaaaaaaga
tGGCCTTATTATctacaaataaaaaagttaaattcttAAGtcgttcttaa
tattttggccattgaaggcTTTTTATGTTCTTAGCTtgtacttataaaaa
aacgtgtatatgttATGtattatacaccttttcgaccgtagccgcttATT
TCCGCGCGGGCACTTTTTGTTATGAatttaaaagatttgaaaatatatat
ataaaacacGTGAAACTTACTGTGCTTTTTTCTTTCCTTGCGTATTTCCT
CTCTAGCAACTTTCTTTGCTTTTGTCCAGTTTTGAGCTGCTCTTTCCTGC
T Coding sequence (CDS) from alignment at sc0000054:712246..717396+ >TCONS_00005600 ID=TCONS_00005600|Name=TCONS_00005600|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at sc0000054:712246..717396+ (Clytia hemisphaerica)
atggaattttattgtaatacccccaaaacaatcccacaatgcatcgctgt
tttagaaaaatcaaaaactcggataaggtctattgaaagAGTGATGattt
tacagataaaaaaaatgtgGTATTTTCTATTGCTAACAAAAGTTGCATTC
GTGTATTCTCAATGGTACTTGGgcgaagaaaaacaacaaacaacaacaaa
tattGATGTAGAGGATGCTTCAAAACCTGTCCCTACAAAATCAGCAATCC
AATGTATTTTGAAATGTCAACGAAGACTAAGGGCGAGTTATTTTGTGGAA
AATACCAATCAATGCTTTTGTGTTTTGAGTAAAAATGACAAGTTGGTTTC
CAATGAAAATGGAACTTTGAATGGCACTTTTTATGAACAGAGTGACTTGG
AGAAATGCGTTGCAAAGACGTGCGAAGAAGTGAAAACAATTTGCCCAGAA
TGCGAACCCGATTTTTATAATCTGGAAATTAATGGAGAACAAACAAAGAA
GTTTTGTGATTTCGATTTCAGAACACCAGAGGAAAAATTATCATCGTGTT
TGGATGTCTGTGCGCAAACATGTTCGAGCGACGCCTACCGTACTGATAAG
GGTTGTGCTCAAATGTATCATTGTCCACATGGTTGTAAAATGAGAGAACT
TGGATTAGCCGATCTCGAATGTAAATCGAATTGTCAACGAACTATCAATT
CAGGGTGCAGCACTATTGTCAATGGTTGGGTTTTTAATTTATGTTCATCA
TGTGGGCGCGATGGCTGCTCATCTAATATGCCCGCAATCACCGAATGTGA
AACCGGTTGCACTAGCTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005600-exon-sc0000054-1491911889:712246..712819 | TCONS_00005600-exon-sc0000054-1491911889:712246..712819 | Clytia hemisphaerica | exon |
| TCONS_00005600-exon-sc0000054-1510915933:712246..712819 | TCONS_00005600-exon-sc0000054-1510915933:712246..712819 | Clytia hemisphaerica | exon |
| TCONS_00005600-exon-sc0000054-1575043694:712246..712819 | TCONS_00005600-exon-sc0000054-1575043694:712246..712819 | Clytia hemisphaerica | exon |
| TCONS_00005600-exon-sc0000054-1491911889:713150..713279 | TCONS_00005600-exon-sc0000054-1491911889:713150..713279 | Clytia hemisphaerica | exon |
| TCONS_00005600-exon-sc0000054-1510915933:713150..713279 | TCONS_00005600-exon-sc0000054-1510915933:713150..713279 | Clytia hemisphaerica | exon |
| TCONS_00005600-exon-sc0000054-1575043694:713150..713279 | TCONS_00005600-exon-sc0000054-1575043694:713150..713279 | Clytia hemisphaerica | exon |
| TCONS_00005600-exon-sc0000054-1491911889:714129..714196 | TCONS_00005600-exon-sc0000054-1491911889:714129..714196 | Clytia hemisphaerica | exon |
| TCONS_00005600-exon-sc0000054-1510915933:714129..714196 | TCONS_00005600-exon-sc0000054-1510915933:714129..714196 | Clytia hemisphaerica | exon |
| TCONS_00005600-exon-sc0000054-1575043694:714129..714196 | TCONS_00005600-exon-sc0000054-1575043694:714129..714196 | Clytia hemisphaerica | exon |
| TCONS_00005600-exon-sc0000054-1491911889:715418..717396 | TCONS_00005600-exon-sc0000054-1491911889:715418..717396 | Clytia hemisphaerica | exon |
| TCONS_00005600-exon-sc0000054-1510915933:715418..717396 | TCONS_00005600-exon-sc0000054-1510915933:715418..717396 | Clytia hemisphaerica | exon |
| TCONS_00005600-exon-sc0000054-1575043694:715418..717396 | TCONS_00005600-exon-sc0000054-1575043694:715418..717396 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:712246..717396 + |
Blast
The following BLAST results are available for this feature:
|
