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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005605 ID=TCONS_00005605|Name=TCONS_00005605|organism=Clytia hemisphaerica|type=transcript|length=1427bp
CCATGCGTTGTGGCATCATCCTTTTGACTGGATAGTGGTTGAATTAAAAG
TATAGGTTGATTTTCACTTAAATAGTTTGTGTGTTTGACATCGTTTGGTA
CGATCGCCGATATGGGGAGGAAGTCTCGTCTATTCAAGAAGACGACCTCG
TCAACCAAGACTCTAAAAGAGTTTTTGAGTAATGCTGAGgtcAAGCAGAG
GGAAAAGGAGCTATCAAAGATGAAAGACAAGTTAGAGTCCAACCAAAAAT
ATTCAGATGTATTGAAGAAGAACCGACAGGTAAAGAATTTGGACGAGGAA
GTCATATcaccaaataaaaagaaaaaaaaaagaaagaagaaaaataatcc
GAACCCTATAGTCAACAATGTATCGCAAGATTCAGATGCAAATAATAATT
CCAGCCATGCCATTAACTTGACTTGCAAGTCACAAGCAAATCTTCAGCTG
TGTAAAAAACACGACGTCTCACAAATGATCATAACGGATGATATCGGTAA
CAAGCAATTATTAAAAGATCAAGATGCTGTCAAACAGGATAAGAATATCC
TGCACACCCAATATGTACATAAAGAAGATGCAGAGTGGTAAATACATTTT
ATCAGGAAAAGATCTTGGAAAAATtatctaaaattttgaggggaTGAGCA
AAATCTTCCCTGACGGAAATTTTTCCTCCAATATTCAATCCCCGgtcaaa
aaattgacattttcttcATGTTTGTATCCCAAGATTTTGAGGTAAAGATC
CTTGAACATACGATTTTACTTGACTCGGGTTGATTTCAGTTTTCTCAGGA
ATAAAGGGAAACATCTACAAATTACATGAAAACTGCACGAGGATCATTTA
CTTAAATTCTAGCTCGTCATTTGAAGGCCTGGCTGAAAAACTTTACAATG
ATTCGACTTTCCACCAACAAACGAGCAATTTATCCCTTAGCCACATATTC
TTAAATCAAAACTTGATGAACCAGTAATTAAAATCTTCCCagaaaacaat
ttaagaataaaacaagaaaaaactcTGAAACTTTAATGGAATACCATCCT
GGGTTATCTTGAGACCAAAAGTATAGGCTAACCCCTCTGATGAATTTAGT
TcatatcaaatttcaaaaaatataaacagaCAAATTTTATTGTAACAAAA
TTTCCGTTCTATTTCACAAATCAGTTTACAACCAATCTCCAATGAAGAAT
GGAAGATGGACGATGGGAAAGGAGCAGCGTACCATGCCTGTAAATGGTTC
AATATGATCCTGATCGTCGTTTCAACTGTCATGTTGGTGTTTTGTTTCAT
TCTGCACCAGGACCAATTcgttttcgaaaaaataaccaCTTCTGAATATG
GTACTGAGGACCAGTTAAATGGAATATTTCTCGACCATtcataaatttaa
tttttaaatcattattttcatacaaaa Run BLAST on NCBI transcript from alignment at sc0000054:795839..799371+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005605 ID=TCONS_00005605|Name=TCONS_00005605|organism=Clytia hemisphaerica|type=transcript|length=3533bp|location=Sequence derived from alignment at sc0000054:795839..799371+ (Clytia hemisphaerica)
CCATGCGTTGTGGCATCATCCTTTTGACTGGATAGTGGTTGAATTAAAAG
TATAGGTTGATTTTCACTTAAATAGTTTGTGTGTTTGACATCGTTTGGTA
CGATCGCCGATATGGGGAGGAAGTCTCGTCTATTCAAGAAGACGACCTCG
TCAACCAAGACTCTAAAAGAGTTTTTGAGTAATGCTGAGGTATGTATGAA
CCTTTCTCATACAAATTTCCCCTCGTGATATGATGTGATTTTGTTCAGTC
TTGTCACAAGTGTATCTTTGATTTATCCTCCCTCTGACTTAtaaatgttt
atatattttctCGCGCCTCTTTCACTTTTGGTgctttgcattttttgaaa
aacatttttcgtctAACGTCTCGCGTATGATGGACGATTGGTTTAGtagc
ccccccccagcggtttgcgtgaatgcgtgaaaatctaaaaaaaattgcgt
gaatgcgtgaattgaaaaaacttgcgtgaacgtgaaaatccatatttcta
ttgcgtgaatgcgtgaatctgccctgtctTTTGCatgaacgcgtgaattt
ttccttttcacagtttgtagaaaaccccaaggtgcgcacctatcccaaat
tcaagggatgccaggtgaaggtCCACAAAAATGTCAGCAACTTTCAATTC
TCTATTTTTAAAAACGGTTCAagatttagatgcgctttctagcaatctag
acaccttaaatttccagatttttcgctcgggccaaacatgtattggccct
cgaatcttaaataactctaattcgccccccttgaaagtgtttgtttaaga
taaaaccatggttatACATGATGAGTCATCCAGGGCCAGAGCCAGAGCCA
CTGGgggcaggaggcggccatgacttcaccacgtttttgcaaataaaaag
aaacttatttccaAGAAATCtttacccatgatgtagactttcgataacct
tatttcttggcaaaattagtctgaaatggagtagtatttaagcacatcag
agggctaaaatataaattttctcctgtcggcgcaaaacatggttgcgcct
ccttagtcactatgttttcggcccctacacgttaggaaattaattcgcga
gccctgattaaaacatttctttttaaattttgttgatCGCctcgctcgca
acaaatgttcattcttttacctcattttacaagctatcaagcgatcgcac
cttgcctctaacgaatttagactacattcttcttcaaagagagcattttt
agccaaacgcgagtgacagaaatgcaaaaatttcctctctgcgtaaacca
tggttgccCCTCCTTACCCCTAAGCTAAGCATCATGGTGTTatactcgag
tttgtttgacctatttttgataatgtttaagctattttttgtacaaaatt
tgcctgcggcgcatatcttttcacttactatcgcgatacgttaactgcag
aagcttttccaaacgatcgtgacaagttagaagaatcaaatattttgcgt
gatggcatgtgattaaagttgaaaaattacgtaacactttctatttgggg
gcttcttatgacgctaccaaacacggtgttttatagtcaggtctacatga
aaaaatcactactgagttaagtttttctcaagtgcggtcgaataatatct
cgagtacagccttgtcatacttttttatgcaaatcgaacgttttactcca
taatggcggaaatggcggaaattacgtaaattacgtaacttagcgatatg
tgcaagacctctattttcgacattttccccgattttttccgaaaatttcc
ccgattttccaaaaaattgggtttgcgtgaattccgagaaaaacttgcgt
gaatgcgtgaattgcgaaaaattttttgcgtgaatgcgtgaaatttgggt
ccgctggggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggggggggggggggctct
tagTATGAGCGGCCCCCAGAACATCAGAAGTCTATCTGTGTCAGAAAATT
ACCAAACAGTAAAAAGGTCGAATTTTAGTGGATGTAGACTTAATAAATAC
TCTTGGAACACCTACACAAACTAAAAACTTCTTGCTTCGGCTTCTATATA
gtttgatttacattcatttcaATAGCTGCTGTGTGAACTGGAACAAATTT
TCATCAATTAGCACATCAATATaccatcttttttttcaatttcaggtcAA
GCAGAGGGAAAAGGAGCTATCAAAGATGAAAGACAAGTTAGAGTCCAACC
AAAAATATTCAGATGTATTGAAGAAGAACCGACAGGTAAAGAATTTGGAC
GAGGAAGTCATATcaccaaataaaaagaaaaaaaaaagaaagaagaaaaa
taatccGAACCCTATAGTCAACAATGTATCGCAAGATTCAGATGCAAATA
ATAATTCCAGCCATGCCATTAACTTGACTTGCAAGTCACAAGCAAATCTT
CAGCTGTGTAAAAAACACGACGTCTCACAAATGATCATAACGGATGATAT
CGGTAACAAGCAATTATTAAAAGATCAAGATGCTGTCAAACAGGATAAGA
ATATCCTGCACACCCAATATGTACATAAAGAAGATGCAGAGTGGTAAATA
CATTTTATCAGGAAAAGATCTTGGAAAAATtatctaaaattttgagggga
TGAGCAAAATCTTCCCTGACGGAAATTTTTCCTCCAATATTCAATCCCCG
gtcaaaaaattgacattttcttcATGTTTGTATCCCAAGATTTTGAGGTA
AAGATCCTTGAACATACGATTTTACTTGACTCGGGTTGATTTCAGTTTTC
TCAGGAATAAAGGGAAACATCTACAAATTACATGAAAACTGCACGAGGAT
CATTTACTTAAATTCTAGCTCGTCATTTGAAGGCCTGGCTGAAAAACTTT
ACAATGATTCGACTTTCCACCAACAAACGAGCAATTTATCCCTTAGCCAC
ATATTCTTAAATCAAAACTTGATGAACCAGTAATTAAAATCTTCCCagaa
aacaatttaagaataaaacaagaaaaaactcTGAAACTTTAATGGAATAC
CATCCTGGGTTATCTTGAGACCAAAAGTATAGGCTAACCCCTCTGATGAA
TTTAGTTcatatcaaatttcaaaaaatataaacagaCAAATTTTATTGTA
ACAAAATTTCCGTTCTATTTCACAAATCAGTTTACAACCAATCTCCAATG
AAGAATGGAAGATGGACGATGGGAAAGGAGCAGCGTACCATGCCTGTAAA
TGGTTCAATATGATCCTGATCGTCGTTTCAACTGTCATGTTGGTGTTTTG
TTTCATTCTGCACCAGGACCAATTcgttttcgaaaaaataaccaCTTCTG
AATATGGTACTGAGGACCAGTTAAATGGAATATTTCTCGACCATtcataa
atttaatttttaaatcattattttcatacaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005605-exon-sc0000054-1491911889:795839..796027 | TCONS_00005605-exon-sc0000054-1491911889:795839..796027 | Clytia hemisphaerica | exon |
| TCONS_00005605-exon-sc0000054-1510915933:795839..796027 | TCONS_00005605-exon-sc0000054-1510915933:795839..796027 | Clytia hemisphaerica | exon |
| TCONS_00005605-exon-sc0000054-1575043694:795839..796027 | TCONS_00005605-exon-sc0000054-1575043694:795839..796027 | Clytia hemisphaerica | exon |
| TCONS_00005605-exon-sc0000054-1491911889:798134..799371 | TCONS_00005605-exon-sc0000054-1491911889:798134..799371 | Clytia hemisphaerica | exon |
| TCONS_00005605-exon-sc0000054-1510915933:798134..799371 | TCONS_00005605-exon-sc0000054-1510915933:798134..799371 | Clytia hemisphaerica | exon |
| TCONS_00005605-exon-sc0000054-1575043694:798134..799371 | TCONS_00005605-exon-sc0000054-1575043694:798134..799371 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:795839..799371 + |
Blast
The following BLAST results are available for this feature:
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