TCONS_00005760 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005760
Unique Name	TCONS_00005760
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2841

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000059:282924..291178-
coding sequence from alignment at sc0000059:282924..291178-

transcript sequence

>TCONS_00005760 ID=TCONS_00005760|Name=TCONS_00005760|organism=Clytia hemisphaerica|type=transcript|length=2841bp
agaaaagaaataaagcaCGAAAATGCTAAAATTATATGTTGTTGTATGGt
agcatttttttcaaattgaatttattttttgcaaTTGGGAGATTTATTTA
TAATATACACAATGGCTGATAGATTATTTATGTACAGttgGTATCATGGG
GAAATTTCAAGGCCAACATCAGAAGAGATCTTACTGAATCAAAGCCCTGG
TCTTTTTCTGGTTCGAGATAGTACTTCGTGCAAAGGGGGATATGTTTTAT
CTGTCAgTGAAAACCGTAAAGTCAGCCACTACATTATCACGAATCGGCAA
GGGCAGTATCACATTGGAGATCAAGTATTCAATGACTTGCCTGATATCGT
AGAATTTTATAAACGGCATTTTTTGGATACAACTACTCTAGTTGAGCCAg
cAGCACGACAAGTTGAGCCGGAACCTGAAGCTCCAGCAGCACGTGCTCCA
CCACAAGAATCGATAAAAGTGAAAGCGAAATATAATTTTCCTGGAAATGA
TCCAGAGGATTTACCATTCCGCAAGAATGACAATTTAACGATATTGAAGA
AAGAGGAGGATCAATGGTGGTTAGCAAGAGATAGTCAAGGAAAAGAAGGA
ATGATTCCTGCTAATTATGTCGAAGTGGTACGGACGACATCCACAGTCAA
CACCATGTCAAATTCATCCACCTCAACCCGTGTACCAAGCATCACAACAG
GATCTGGTGGTTACACGACACCCAACAATACTTCAGTACCTTCAACTGTT
CCAACAGCAACGACGGTACCAGCGATCGCAGAAGCGATTCAAGATCGTGT
CCCTAGTATCTACGACCCTTACGAACTTAAATTTCAGAAAGGAGAGAGAA
TTTTAGTGCTTAAGATGCGTGAGGATGGCATTTGGGAAGGACAattaaaa
aatggtaaaaaaggaattttcccGTTCCGCTACGTCAAAATAGTTTCCAG
TTCACCACAAGACGTAGATGCGTGGAACAACTCGtaataactcgggataa
ctcctTAGATGTATTTCTCTTAATACAATTCATAGTTGTGGACAAGATGG
TTATGCACCTCCCAATTGAATGGTGATTATGATATGTATCAATGGAAGAC
CTTTACTTGAAAACTACACTTTTTTTGTACGCATGTTTTGGCGGCTGGAT
CATgatttaatgatattttgataGTTATGTGCTATATCCCCATTAACTTC
TTATTCTGACCCCAATTCTATCCTTAAACTAGATTTTGAAGTGTTACTTC
TCCAAATAGACACAAAAAATCACACACCATAAGAAGAAACTTGactcgtt
ttttataagaatcagtaacTCTTTTTTTGAGACTCAGCTGTTCCTATATT
TTTCGGCACCTTGAATTCATAATGATTCCTTCTACCCTGATTCTATTTTA
GGGCAAGACTAATGAATTTTAGGTTTAACATACTATTCTTTATAATTTGA
CTCTTAATAAGCTTAAATTCAAACAGTCCAGGCTTGCCATTGTTCTTAAA
ACGTTctaattttggcatttttgagcctcattgttctaaAAAGGAGTGAT
AATTTTTGTAAGGAGTTTGGGAATTTCTATGATGCAAGGTTTAAATTCGT
ATAATTGAAGGGTGTGTGTATCTTTTCCTGCAACAAAACAACTCGTCTGA
TTTTGCCATAATTTAcatcaatattttttatctttttttctgtTATAATA
ATGTAATCTCGAATGAATTCAAAGCGCAAGTACGGTGGCCCtgaaatgtc
ttcattttctcaCATATGATAAAGACCAAATATTCGGTGATGAAACAGAG
ATATTTTAGGGCCATCGTGCGTCATAatgtaaattgttttttttgtactG
AGGAATATGATTAAAATTTTCtagttaatttttatttttggtgatttttt
tgtgtctCTGATTCAATCGACTGTTTAAGATATTGACTATTAAATAGGTT
CTTGAGATGACTAAATAGGTTGATTTTTGTTGTGGGAATTATTTTTGTCA
ATACTTTACTCGGATAAGTTTAACTACATATTAGACTTTGCGTTTTCGcc
aatttttgtattttcgccaattttgttaaaatttctgGCTCACAAAATAA
ATCGCACGCCAAAAATTCTCTTGTCACGGTATCTCTCTATTTATACTGTT
TTtctgttttaatttttgctaTGTTATAGATTTTATTATACCTTTTTGTA
ATGTATATTTTTCAcgatattattttttgtttgattatgTTATTGTGTAG
CACgtttctaaaaatcttttttttttcgaacaaaaatattttcaatagcA
CGCAAAAATATTATATTAGAGAAGTCCCCCCATATGTTCTGTTTCTAACT
CAATTCGAATGGTTTTGAGCACCAAGCCAAGTCATATATGTTATCTGCCA
TATCGACTTTTATCTTCTCTTGAGCCAGTATGAGACATGTTTTCAGCTGT
TTTTcttaataaaatgaaataattttgaattctcttatttttataaatta
ttgGTCAAATTTTCTCTTCGTAGCTGAGTGGGTTGAACCTTTTTAGTCAT
GCTCATGCCCCTTGTCTCCATTTATGAATAAAAACAATACAATAGAATAT
TTTAAACTAAATTGTCATTACAGTATGTGTAACTTTtgtagaataatttt
tttagtATCAATCCAATTTTTGGTATACTTTCCCCCATTTTAAGCCAAGT
CTTGTATAAATACGAAAAAAGTATATTATTATTTTCTGTTTCTGTATTAT
TTGATTGACTCAGATGagatgaagtttttataagattatACTtaaataat
tggtcatttgaagttataaaatgacgcgttcttcagaaaaa

Run BLAST on NCBI

protein sequence of TCONS_00005760-protein

>TCONS_00005760-protein ID=TCONS_00005760-protein|Name=TCONS_00005760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MADRLFMYSWYHGEISRPTSEEILLNQSPGLFLVRDSTSCKGGYVLSVSE
NRKVSHYIITNRQGQYHIGDQVFNDLPDIVEFYKRHFLDTTTLVEPAARQ
VEPEPEAPAARAPPQESIKVKAKYNFPGNDPEDLPFRKNDNLTILKKEED
QWWLARDSQGKEGMIPANYVEVVRTTSTVNTMSNSSTSTRVPSITTGSGG
YTTPNNTSVPSTVPTATTVPAIAEAIQDRVPSIYDPYELKFQKGERILVL
KMREDGIWEGQLKNGKKGIFPFRYVKIVSSSPQDVDAWNNS

Run BLAST on NCBI

transcript from alignment at sc0000059:282924..291178-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005760 ID=TCONS_00005760|Name=TCONS_00005760|organism=Clytia hemisphaerica|type=transcript|length=8255bp|location=Sequence derived from alignment at sc0000059:282924..291178- (Clytia hemisphaerica)
AGAAAAGAAATAAAGCACGAAAATGCTAAAATTATATGTTGTTGTATGGT
AGCATTTTTTTCAAATTGAATTTATTTTTTGCAATTGGGAGATTTATTTA
TAATATACACAATGGCTGATAGATTATTTATGTACAGGTAAGTTAACTTC
TTTCAATTTACTTTGATTGACATTGATTATTGTGGTAAATTATCATAATT
TATCACAGTCTACACTTTAGCGCAATATTTTATTAACCAGGGTGCTAAGG
CTCAAGGCCTTAAATTAGCCATTAAATCTTGTAAAGTGAAAGTTTTTTGT
ATAATCTAATCATGACAAATCACAGCCCATGCCCTAATATCAGGGGTGGA
CAAATTAAGAATCTTTCAGAAAATGAGCTAGAATGCTAAGCAACCCCAGG
CCTGACCTGAAAAGTTGAGTTACTTATAAAAAAATGTGTAATAATTTGCT
TTTGATTTTGCTGTTTGAAACAAGTATAGATCAAACAAAGTGTTTTGATG
CTAATATTTCTTTTTACATGATTTTATTTTTAGTTGGTATCATGGGGAAA
TTTCAAGGCCAACATCAGAAGAGATCTTACTGAATCAAAGCCCTGGTCTT
TTTCTGGTTCGAGATAGTACTTCGTGCAAAGGGGGATATGTTTTATCTGT
CAGGTAAAGTAAAAATATTTTGTATACAAGCCTGGTTGGAAATAGTGTAT
TATAGTTTATGCATATACTAAGAAAATATGCATTTTAAAGACCAAATTTT
GAGCGTATATGTAGTTTTGGCATAAAGATGCTTTCCTTCTTGACCAGGCC
CATTTTCATCTTTTGAAAGAAATGTGGCTAACACATTGTTCTGATTGATT
TCATTTTTTTTCTAAGAAAACTTTAAACATTACTCCTAATTGGAAAAACG
TTATCATTAAAAGTAACCCCTTGTTGAAAAGATAATTTTGAGGAGAATGA
TTCAAGTCTAAGAGAATGAAGATGGAAATCAAAATTAGAAAAAAAGAGAT
GATTTTTTCTAATGTGACTAAAAATTTTATCTTATATTTTTCTGAAACTT
GACAATGACTGATTTCAAATATTAAATCAGATTTTTTCTTTCACTCTTAA
ATCATAAGTTATTATAGCCCTCCCAAAAAGGTCCAAATCATCCAGTTTTA
CTATAGCCATACATATTTTATTGCCCATCTGTTAAAAAAAGACGTTTTAA
TACTTTTTTAGTGAAAACCGTAAAGTCAGCCACTACATTATCACGAATCG
GCAAGGGCAGTATCACATTGGAGATCAAGTATTCAATGACTTGCCTGATA
TCGTAGAATTTTATAAACGGCATTTTTTGGATACAACTACTCTAGTTGAG
CCAGTAAGTATAAAAAATAACTTTTTAGCTTTAATTTTATTTTCGTTTAG
GATTTTAGTACAATATAGTGGCTGGTTTAAGTGTAGTGCTACAGCGATCA
AAACAGGGGGGGGGTCAATATTTATGATACCAACCCATAGCCCAAAAACC
TGACTTTTGACCTTTTGAGCTAAGTTAACACCACCACCCCAAAATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAGGAAAAAAGATACCACCACCCGGCTAT
GGGTCTGGTATCTGGATGTTGACCCCCCCCCCTGATCAAAATTTGAAAAT
CAGGGGAGGGATTCTTTGACCTTTTTTTCTCAAATTCTTTCTCCATCCTT
GGACTACATACAGAGGCTTTTCTGTCTCTATAATACCAAAGTTCCAAAAA
TATGTGTTAATTTGCAATGTAAATCCATTCACCGTCTCAGAAGGAAAACT
TTGCTTGCTTTGACCACTGTTGAAAGCTGGACCTGGTATCTTCCATGTTT
TATATTATATTGTTTTCATTTTTTTAGGCAGCACGACAAGTTGAGCCGGA
ACCTGAAGCTCCAGCAGCACGTGCTCCACCACAAGAATCGATAAAAGTGA
AAGCGAAATATAATTTTCCTGGAAATGTGAGTAAAAGATGAAAAAAAGAG
TGGTCTAACTCTGGTGAAATTATAAAGTAGAGCATTTTTATGAACCTGAT
GATGGTATAAAACCACTGATTAACTTTGAGAATTTTTGTTCATGAATTTT
AAAATATATTTTTAATTGTTTGAATCATTGGTTGTATATAGTGAGTGGAA
ATGTTTGGATTAGTAGGTGTAGTTATCCCCATGGAAATTCCATAAGGTTT
TGAAAAAAAGCTGTAAAAATTTCCTTTGGCAATTAAGAGGTTAAAAGAGG
AGAAAAATAGATAAGTTTGAGAAGAAATTTCCCCATAAGCAGGGCTTTAT
AAGAATGTCCTACCGATACCTTAAGCCATTTTTCCTGCCCTTTTAGCGTC
CGGTTAACGAACCCTGCCCCGCCTAAAATCATGAAAGTTTTGGTAAAAAC
AGCCTTTTTAGTGGAAAAACACTAAAAGTGCCCTTTTTGGCCAACGGACA
CTGCCCTGCCTTTCTAAAATAATTATGGCCTCTACCTTATTACACGAATA
TTACTAGACAAGTATTCAATGGCCTTGAAATTTGAACGATCTGAAATCAA
CACAAATTTTTCTGATTTTTCAAGGAAACAATGACTGGTTTTGATCAAGG
GGGTTTTTATTAACACGAAATATTTTAATTCGTGTTCATAAAATGACTAG
TAATATTCGTGTAATAAGGTTAGATTTAATATTAAGTGAATAAATTTTGA
AAAAATATCCCCATAAAGTTTTTATAATACAAGATTAATAAAAAAAATGG
AGAGAAAAGATGTGAACTACCAGGAATTACCCGAATGTAGACAAGAGGCT
GCATTAAGAATGTTCTGAATGGAAATGAATGAATGATTTTTTATAATACA
GGATCCAGAGGATTTACCATTCCGCAAGAATGACAATTTAACGATATTGA
AGAAAGAGGAGGATCAATGGTGGTTAGCAAGAGATAGTCAAGGAAAAGAA
GGAATGATTCCTGCTAATTATGTCGAAGTGGTATGGAAACAGCTTTCTTT
AACTTTTTTTATTAAATTTTTAGATACTAAAGTATACATCCATGTGAAAT
CTGATTTCAATTTGTACTGTTGTTGTAGTGTTTCAACTATTCTCTCTCTA
AACAATTTACAAGTTGAAGGGTGTGCTAGGCCATTGATTTCAAAGCCACG
AGGGGCTAGATCCAAAACTCCTGGATTGGAAAAGAAGCTACTTATTTCCT
ATCCAAATGTTTGACCTGCATGTTTTCCAAACATAATTTCTAAATGTGGG
ACAAACTTAAAGCTTCGCTTTTCTTGCTTGAGAAATGTTGAGGATTCCTC
TCTCGCCCCTTCGGGGCTTCAAACTCAATATGTTAACCAGACTAAGCCTT
TATGATAGTATCTGTCCATTTTGACAAGACTCTGGTCGAACAAATACTGA
TTCTCATTTTTGCAACACTTTTTAGGTACGGACGACATCCACAGTCAACA
CCATGTCAAATTCATCCACCTCAACCCGTGTACCAAGCATCACAACAGGA
TCTGGTGGTTACACGACACCCAACAATACTTCAGTACCTTCAACTGTAAG
TCTGCCTCATTGATCGCTAGCAACTTGACTGGATATGGCTTCCCATATAA
AAGGAAGCCCGTCCAGTTTTAAAGCTGACTAGTCCNACTAGCAACTAGAC
TGGATATGGCTTCCCATATAAAAGGAAGCCCGTCCAGTTTTAAAGCTGAC
TAGTCCGTCATCTTGTTTTCAATTCTGATCGTCAACAACACGATTGGAAC
GTTTTGAAATTCCAGCTCCCAGGATTTTTCAGGTGGGGCTAAGGAGAAAA
TTCCCAGGCTAAATTCAAAAAACTTAGCCCCACCTTCACAAAGCAAAATA
TCAAAGAAATTTTGTTTGCAAATTCTCAAGAAATCTACTGTGCCGCAGGC
AAAAATGTTTTTCAGTGAGGGTCAAAACCTTCCCCACAGCAGAGATTTTA
ACATAATTTAAAATATTTGTTACCTATCAGCTCTACTCCAGTTCTATTAC
CCAACGGCAATGAATTTTGAAATTAGCCGTAAATATCGGGTTTGTGTACA
GACTAACCTGGACTAACCAGCATAATGCTCTGCTCAAAAGAGATATGGTA
AAGGTCCATTCATTCAAAGCTGAAGTGAAAATTCCTGAAAGTTGTCTGAA
AATGAAAGGAAAAGCGACTGGGTTTCTAAAATGTATATTTTTGATTGATA
GTAGATCTAGGCTCTTAGATCGTATAAAAACCTGAGCATTTTATAATATT
CTTGTAAAATTTGGATGAAAAAGTTTAAAGCGGGCTGTCAAAGCCATCCT
GGGTGCTAGATCCTCTTACGATGTATCGTAGATACTCAGATCATTTTACA
AAGCTTGCCTGTCGTTCTTACTCACTCTCAGAGTTTTGACATGCCCTCAC
TTTTCGCACCATGTATTTTTCCCACACTTCTTCAGATTTATGGAAAACTT
GATTTGCCAGACACTGTTATCGAAATCGCTTTCCTCTCTTCTTCTTTGGA
GACCCCCAACAAAACAGTTTTGAGGGATAGGGACGTTTGGAGAAGGAAGG
ATCGTTAATGCCTGGACCGCAGTCGAAACATGATGATGATAAAATGTTAT
TCATTTTTTCAGGTTCCAACAGCAACGACGGTACCAGCGATCGCAGAAGC
GATTCAAGATCGTGTCCCTAGTATCTACGACCCTTACGAACTTAAATTTC
AGGTATGTCAATATGAAGTGTTTTTTTTTTCTTATACAGTGTTAATAGTT
CTTCCGTCTCTGTGAAGTATATAAAGAGGCTTAATTCATCCTCAGAATTA
ATTATAATTCGCCAAATTTCAAAAAAGTGAGCTAATAATGCTGTGTCTCA
GGCAAAAAAAAGTCAGCTTTGACCACTGCTTATACGAGATATCAACATAT
TTTCTAGATTTTTTGAAACTTTGGATGCAAATAAGTTAATGTTTCAGGTT
TTAATAAAGTCTCTTCGAAAATGTCTTATAAAGCAATCAGTAAAGATAAT
TCAATTACCATGGTGGCCAGCGACCCTTGAATTCCTTGAAACCCTTGAAA
CACCCTTGATTTTTTTCATGCCCTTGAAAATTTCATTGAAACCCTTGAAA
AATCAATATTATTGTGGGGACCCTTGAGGTGAAAAATTCATACCCTTGAA
ACCCTTGAAATCCCAAAGTTTTCTTCTTTCCTTAATGTGTCACTGTATTT
TGATTCTTTTTTCTTTATTTTTTATTTGCAGAAAGGAGAGAGAATTTTAG
TGCTTAAGATGCGTGAGGATGGCATTTGGGAAGGACAATTAAAAAATGGT
AAAAAAGGAATTTTCCCGTTCCGCTACGTCAAAATAGTTTCCAGTTCACC
ACAAGACGTAGATGCGTGGAACAACTCGTAATAACTCGGGATAACTCCTT
AGATGTATTTCTCTTAATACAATTCATAGGTATTAAATTAATATGGTTCT
ACTCTCGAGTTTCGGGGAATGTTCAACTCGTACGTGAGCTGAGAGTGAGT
TTGGGTGTTGAGTTTAAAGGTTGTACTTTTAATAGAGGTCTTATGAAATG
AAACAACTCCCTGGAAAAACATAGAAAATAACACGCGAAAAATTTTAATG
AATTTTAATATAGATCAAAATAAGATTTAAAATATTTTGTCTTTCATAGT
GTAGTTAGGTTTACACAAACAAAGTTATATGCTATGAAAATTTACTTCAA
AGTCTTCTTTATGACTAAATGTAAGTACTAAAATAACGCACAACTCTCTA
TCACACCTTTGCCCATCTGGTACGCAGTGTTGTTTCAACGTTCATAAAAC
GTTTTATTGACGTTACGGGACGTTAGATAAACGTTGAAACGACGGTCGCA
TGCTAGCCTCAGCTCAACAAGAACTCCCTGAAAATCTTACATTTTGATGG
TTTGCCTACTAAAAGAAACTCAGAATTATGAGCTTTCCAAATTGGAGTGA
AATAGGATATTTGTTTACTAAAACATGGTTTGACCTGAGAATGTATTGGA
ATTGCTGGTGGTGCTGTTAAATAAAGTCTAATGTAATTGGAAGAAAAACA
AACCCCACCGCTAGATTTGATGAAATCCTTCGTTGGGAATTTTATTCAAT
GATTGTTGTAATGCTATTTGGTGATTTTCTTGGATACGGATTTGTTCAGT
TGTGGACAAGATGGTTATGCACCTCCCAATTGAATGGTGATTATGATATG
TATCAATGGAAGACCTTTACTTGAAAACTACACTTTTTTTGTACGCATGT
TTTGGCGGCTGGATCATGATTTAATGATATTTTGATAGTTATGTGCTATA
TCCCCATTAACTTCTTATTCTGACCCCAATTCTATCCTTAAACTAGATTT
TGAAGTGTTACTTCTCCAAATAGACACAAAAAATCACACACCATAAGAAG
AAACTTGACTCGTTTTTTATAAGAATCAGTAACTCTTTTTTTGAGACTCA
GCTGTTCCTATATTTTTCGGCACCTTGAATTCATAATGATTCCTTCTACC
CTGATTCTATTTTAGGGCAAGACTAATGAATTTTAGGTTTAACATACTAT
TCTTTATAATTTGACTCTTAATAAGCTTAAATTCAAACAGTCCAGGCTTG
CCATTGTTCTTAAAACGTTCTAATTTTGGCATTTTTGAGCCTCATTGTTC
TAAAAAGGAGTGATAATTTTTGTAAGGAGTTTGGGAATTTCTATGATGCA
AGGTTTAAATTCGTATAATTGAAGGGTGTGTGTATCTTTTCCTGCAACAA
AACAACTCGTCTGATTTTGCCATAATTTACATCAATATTTTTTATCTTTT
TTTCTGTTATAATAATGTAATCTCGAATGAATTCAAAGCGCAAGTACGGT
GGCCCTGAAATGTCTTCATTTTCTCACATATGATAAAGACCAAATATTCG
GTGATGAAACAGAGATATTTTAGGGCCATCGTGCGTCATAATGTAAATTG
TTTTTTTTGTACTGAGGAATATGATTAAAATTTTCTAGTTAATTTTTATT
TTTGGTGATTTTTTTGTGTCTCTGATTCAATCGACTGTTTAAGATATTGA
CTATTAAATAGGTTCTTGAGATGACTAAATAGGTTGATTTTTGTTGTGGG
AATTATTTTTGTCAATACTTTACTCGGATAAGTTTAACTACATATTAGAC
TTTGCGTTTTCGCCAATTTTTGTATTTTCGCCAATTTTGTTAAAATTTCT
GGCTCACAAAATAAATCGCACGCCAAAAATTCTCTTGTCACGGTATCTCT
CTATTTATACTGTTTTTCTGTTTTAATTTTTGCTATGTTATAGATTTTAT
TATACCTTTTTGTAATGTATATTTTTCACGATATTATTTTTTGTTTGATT
ATGTTATTGTGTAGCACGTTTCTAAAAATCTTTTTTTTTTCGAACAAAAA
TATTTTCAATAGCACGCAAAAATATTATATTAGAGAAGTCCCCCCATATG
TTCTGTTTCTAACTCAATTCGAATGGTTTTGAGCACCAAGCCAAGTCATA
TATGTTATCTGCCATATCGACTTTTATCTTCTCTTGAGCCAGTATGAGAC
ATGTTTTCAGCTGTTTTTCTTAATAAAATGAAATAATTTTGAATTCTCTT
ATTTTTATAAATTATTGGTCAAATTTTCTCTTCGTAGCTGAGTGGGTTGA
ACCTTTTTAGTCATGCTCATGCCCCTTGTCTCCATTTATGAATAAAAACA
ATACAATAGAATATTTTAAACTAAATTGTCATTACAGTATGTGTAACTTT
TGTAGAATAATTTTTTTAGTATCAATCCAATTTTTGGTATACTTTCCCCC
ATTTTAAGCCAAGTCTTGTATAAATACGAAAAAAGTATATTATTATTTTC
TGTTTCTGTATTATTTGATTGACTCAGATGAGATGAAGTTTTTATAAGAT
TATACTTAAATAATTGGTCATTTGAAGTTATAAAATGACGCGTTCTTCAG
AAAAA

Coding sequence (CDS) from alignment at sc0000059:282924..291178-

>TCONS_00005760 ID=TCONS_00005760|Name=TCONS_00005760|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at sc0000059:282924..291178- (Clytia hemisphaerica)
ATGGCTGATAGATTATTTATGTACAGTTGGTATCATGGGGAAATTTCAAG
GCCAACATCAGAAGAGATCTTACTGAATCAAAGCCCTGGTCTTTTTCTGG
TTCGAGATAGTACTTCGTGCAAAGGGGGATATGTTTTATCTGTCAGTGAA
AACCGTAAAGTCAGCCACTACATTATCACGAATCGGCAAGGGCAGTATCA
CATTGGAGATCAAGTATTCAATGACTTGCCTGATATCGTAGAATTTTATA
AACGGCATTTTTTGGATACAACTACTCTAGTTGAGCCAGCAGCACGACAA
GTTGAGCCGGAACCTGAAGCTCCAGCAGCACGTGCTCCACCACAAGAATC
GATAAAAGTGAAAGCGAAATATAATTTTCCTGGAAATGATCCAGAGGATT
TACCATTCCGCAAGAATGACAATTTAACGATATTGAAGAAAGAGGAGGAT
CAATGGTGGTTAGCAAGAGATAGTCAAGGAAAAGAAGGAATGATTCCTGC
TAATTATGTCGAAGTGGTACGGACGACATCCACAGTCAACACCATGTCAA
ATTCATCCACCTCAACCCGTGTACCAAGCATCACAACAGGATCTGGTGGT
TACACGACACCCAACAATACTTCAGTACCTTCAACTGTTCCAACAGCAAC
GACGGTACCAGCGATCGCAGAAGCGATTCAAGATCGTGTCCCTAGTATCT
ACGACCCTTACGAACTTAAATTTCAGAAAGGAGAGAGAATTTTAGTGCTT
AAGATGCGTGAGGATGGCATTTGGGAAGGACAATTAAAAAATGGTAAAAA
AGGAATTTTCCCGTTCCGCTACGTCAAAATAGTTTCCAGTTCACCACAAG
ACGTAGATGCGTGGAACAACTCGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003271	XLOC_003271	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00005760-protein	TCONS_00005760-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000059	supercontig	sc0000059:282924..291178 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0552608	0.806307	0.0184599	2.64413	1.0068	0.756265	5.44669	0.102003	0.790298	0.469577	2.57772	0.000729859	0.684919	0	1.44938	0.77318	1.27073	1.7923	0	0.348249	0	0	0	0.00276808	0.0243227	0.136825	0	5.97772e-09	5.12016e-10	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001452	SH3_domain
IPR000980	SH2
IPR011511	SH3_2

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00005760 vs. Swiss-Prot (Human)
Match: CRKL (Crk-like protein OS=Homo sapiens GN=CRKL PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 5.337e-52
Identity = 124/299 (41.47%), Postives = 174/299 (58.19%), Query Frame = 1

Query:  136 SWYHGEISRPTSEEILLNQSPGLFLVRDSTSCKGGYVLSVSENRKVSHYIITNRQG-QYHIGDQVFNDLPDIVEFYKRHFLDTTTLXXXXXXXXXXXXXXXXXXXXXXXSIK---VKAKYNFPGNDPEDLPFRKNDNLTILKKEEDQWWLARDSQGKEGMIPANYVEXXXXXX-----------------XXXXXXXXXXXXXXPSITTGSGGYTTPNNXXXXXXXXXXXXXXXIAEAIQDRVPSIYDPYELKFQKGERILVLKMREDGIWEGQLKNGKKGIFPFRYVKIVSSSPQDVD 969
            +WY G +SR  ++  L  Q  G+FLVRDS++C G YVLSVSEN +VSHYII +    ++ IGDQ F+ LP ++EFYK H+LDTTTL+EPA R   P   + +A   P        V+  Y+FPGND EDLPF+K + L I++K E+QWW AR+  G+ GMIP  YVE +  +S                   +  +   T+T +P+++   G   TP        +P+    P  A+AIQ RVP  YD   L  + G+ + V +M  +G WEG++ NG+KG+FPF +VKI    PQ+ D
Sbjct:   13 AWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITP--------LPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV-NGRKGLFPFTHVKIF--DPQNPD 300

The following BLAST results are available for this feature:

BLAST of TCONS_00005760 vs. Swiss-Prot (Human)

BLAST of TCONS_00005760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CRKL	5.337e-52	41.47	Crk-like protein OS=Homo sapiens GN=CRKL PE=1 SV=1	[more]

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TCONS_00005760 (transcript) - C. hemisphaerica