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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006011 ID=TCONS_00006011|Name=TCONS_00006011|organism=Clytia hemisphaerica|type=transcript|length=4002bpRun BLAST on NCBI protein sequence of TCONS_00006011-protein >TCONS_00006011-protein ID=TCONS_00006011-protein|Name=TCONS_00006011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1144bp MATLCTIWLIMTVILNYRVPLIKGENYTVTLLYPISNVQLVSIHYFGAFIRun BLAST on NCBI transcript from alignment at sc0000062:404973..426583+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006011 ID=TCONS_00006011|Name=TCONS_00006011|organism=Clytia hemisphaerica|type=transcript|length=21611bp|location=Sequence derived from alignment at sc0000062:404973..426583+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000062:404973..426583+ >TCONS_00006011 ID=TCONS_00006011|Name=TCONS_00006011|organism=Clytia hemisphaerica|type=CDS|length=72135bp|location=Sequence derived from alignment at sc0000062:404973..426583+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006011 vs. Swiss-Prot (Human)
Match: ANPRA (Atrial natriuretic peptide receptor 1 OS=Homo sapiens GN=NPR1 PE=1 SV=1) HSP 1 Score: 527.324 bits (1357), Expect = 1.470e-165 Identity = 319/763 (41.81%), Postives = 449/763 (58.85%), Query Frame = 2
Query: 1118 DFLKCTQSGGFRFECF-FTNPDLTWSNKKDDLYDAVKVYYETLVKTKLKNQDTRNGEAVMKNARNVIFKSRLGYNFTLNEKLDFVPTYSLLYFQLGDKYNQSIDIHEIQPIGTYDQLPSDTTTLILNGPSSMAGWENFPVRQSPKCGFKNELCPPPDKDNTTETTTAIVVSIVFIILICVGLYIGLFMYRRRLL---LTNMSWKI-----DESQIQITNSGMDAXXXXXXXXXXXXXXQETRGNIQLFTKVAIYKSQLVACKVFHKNKFITNRIVLQELRDMLDLSHENINPFLGIVLNPQSSNMIIYQYCPKGSLQDVLSNEDIKLDSTFLSSFVKDIVKGMVYLHHSSLKSHGRLKSCNCIVDSRWLIKITDFGTNFLRNGLDPLNKIDDNARYTGLLWTAPELLRMSNPLPRGTQKADVYSFGIILQEIITRSEPFAMHELD--AVDIIRRVKAVSDPPFRPAVQKYHAAQSFSDSNSSNEMYQLMLNCLTEDPTERPTFSETRRFMKKMSHGKETNVFEHMVVMLEKYSNHLEKVVEDRTKQLIVEKKKTDDLVHRMLPKFIADQLKNNGSVEAEWYDEVTVYFSDVVGFTTISGKSTPMQVVDFLNDLYTLFDNVISTYDAYKVETIGDAYMVVSGLPVRNGHLHAAQIADLSLHLLRAVDEEFVIRHQPQNKLRIRIGLHSGAVAAGVVGLTMPRYCLFGDTVNVASRMESNGIALRIHISQQTKDLLESHNDNYHIEPRDQKVELKNVGIVQTYWL 3373
+FLK Q +E F FT D + +D + +Y + + +T +GE + + N F+ GY ++ D +SL D N + + + GT +L + + LN P +P PKCGF NE P ++D+ + +V + ++ I L + F+YR+ L L + W++ + S ++ + N S T G Q+F K A YK LVA K ++ + R VL EL+ M D+ +E++ F+G +P + I+ +YCP+GSLQD+L NE I LD F S DIVKGM++LH+ ++ SHG LKS NC+VD R+++KITD+G R+ LDP + Y LWTAPELLRM++P RG+Q DVYSFGIILQEI RS F + LD +II RV PPFRP++ A QS + E+ LM C EDP ERP F + R ++K + +N+ ++++ +E+Y+N+LE++VE+RT+ + EK+K + L++++LP +A+QLK +V+AE +D VT+YFSD+VGFT +S +STPMQVV LNDLYT FD VI +D YKVETIGDAYMVVSGLPVRNG LHA ++A ++L LL AV F IRH+PQ +LR+RIG+H+G V AGVVGL MPRYCLFGDTVN ASRMESNG AL+IH+S +TK +LE + +E R VE+K G V+TYWL
Sbjct: 324 EFLK--QLKHLAYEQFNFTMEDGLVNTIPASFHDGLLLYIQAVTETLAHGGTVTDGENITQRMWNRSFQGVTGY-LKIDSSGDRETDFSLWDM---DPENGAFRV-VLNYNGTSQELVA-VSGRKLNWPL------GYPPPDIPKCGFDNE-DPACNQDHLSTLEVLALVGSLSLLGI---LIVSFFIYRKMQLEKELASELWRVRWEDVEPSSLERHLRSAGSRLTLSGRGSNYGSLLTTEGQFQVFAKTAYYKGNLVAVKRVNRKRIELTRKVLFELKHMRDVQNEHLTRFVGACTDPPNI-CILTEYCPRGSLQDILENESITLDWMFRYSLTNDIVKGMLFLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESFRD-LDPEQ---GHTVYAKKLWTAPELLRMASPPVRGSQAGDVYSFGIILQEIALRSGVFHVEGLDLSPKEIIERVTRGEQPPFRPSL----ALQSHLE-----ELGLLMQRCWAEDPQERPPFQQIRLTLRKFNRENSSNILDNLLSRMEQYANNLEELVEERTQAYLEEKRKAEALLYQILPHSVAEQLKRGETVQAEAFDSVTIYFSDIVGFTALSAESTPMQVVTLLNDLYTCFDAVIDNFDVYKVETIGDAYMVVSGLPVRNGRLHACEVARMALALLDAV-RSFRIRHRPQEQLRLRIGIHTGPVCAGVVGLKMPRYCLFGDTVNTASRMESNGEALKIHLSSETKAVLEEFG-GFELELRGD-VEMKGKGKVRTYWL 1051 The following BLAST results are available for this feature:
BLAST of TCONS_00006011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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