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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006019 ID=TCONS_00006019|Name=TCONS_00006019|organism=Clytia hemisphaerica|type=transcript|length=2319bpRun BLAST on NCBI protein sequence of TCONS_00006019-protein >TCONS_00006019-protein ID=TCONS_00006019-protein|Name=TCONS_00006019-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp MNNKKKKSDLYGFLTAFGYNGPMHGEAQGRYRTSYEVRKRKEANGIKPYRRun BLAST on NCBI transcript from alignment at sc0000062:536481..551904+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006019 ID=TCONS_00006019|Name=TCONS_00006019|organism=Clytia hemisphaerica|type=transcript|length=15424bp|location=Sequence derived from alignment at sc0000062:536481..551904+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000062:536481..551904+ >TCONS_00006019 ID=TCONS_00006019|Name=TCONS_00006019|organism=Clytia hemisphaerica|type=CDS|length=1272bp|location=Sequence derived from alignment at sc0000062:536481..551904+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006019 vs. Swiss-Prot (Human)
Match: PELI2 (E3 ubiquitin-protein ligase pellino homolog 2 OS=Homo sapiens GN=PELI2 PE=1 SV=1) HSP 1 Score: 367.466 bits (942), Expect = 1.785e-118 Identity = 181/408 (44.36%), Postives = 258/408 (63.24%), Query Frame = 2
Query: 188 YGFLTAFGYNGPMHGEAQGRYRTSYEVRKRKEANGIKPYREIDLADENALKMLESE-TDTVVFSSGNDTGSLIAFKKDNKTDLFQMGRSTEPLIDYVVVDTIPGNKENLEQHLVQSTISRYAARFTVERSSPHRTRIYAAAFNAKRQIVLGEHAPQWSNGKKFSDGLTTNGVLLCHPKGNWGKEMKPGVWREVSVSGEMFGLRHCRSAKHRGKTSDC-SNVLQDGTLIDLCGVVMLWRTCNGLKYSPSRSDLLEKREYLNSMKVQCPVGLATLRF---DNKTNDKESLPYVYTTCGHVHGYHTWGARPGLDSIIQDNSNIFDDIRQCPYCKEKGVYVRLEVGLEPNFYIDNGPLTHAFVPCGHMTTELTARYWSRVLIPLGKDKFHMACPFCALPLEGE-GFIKLIYQ 1393
YG L GYNG + +GR ++ + + KR +ANG+KP ++ A K + + ++ ++ + ++ + D TD+FQ+GRSTE ID+VV DTI G++ E + QSTISR+A R +R+ P+ RI+AA F++ + I LGE A +W N DGLTTNGVL+ HP+G + +E +PGVWRE+SV G+++ LR RSA+ RGK + +NVLQDG+LIDLCG +LWRT +GL ++P++ + R+ +N+ + QCPVGL TL F + K +E P+ Y +CGHVHGYH WG R S+ + R+CP C+ G YV L +G E FY+D GP THAF PCGH+ +E +A+YWS++ +P G FH ACPFCA L GE IKLI+Q
Sbjct: 19 YGELVVLGYNGALPNGDRGRRKSRFALYKRPKANGVKPSTVHVISTPQASKAISCKGQHSISYTLSRNQTVVVEYTHDKDTDMFQVGRSTESPIDFVVTDTISGSQNTDEAQITQSTISRFACRIVCDRNEPYTARIFAAGFDSSKNIFLGEKAAKWKNPDGHMDGLTTNGVLVMHPRGGFTEESQPGVWREISVCGDVYTLRETRSAQQRGKLVESETNVLQDGSLIDLCGATLLWRTADGLFHTPTQKHIEALRQEINAARPQCPVGLNTLAFPSINRKEVVEEKQPWAYLSCGHVHGYHNWGHR----------SDTEANERECPMCRTVGPYVPLWLGCEAGFYVDAGPPTHAFTPCGHVCSEKSAKYWSQIPLPHGTHAFHAACPFCATQLVGEQNCIKLIFQ 416 The following BLAST results are available for this feature:
BLAST of TCONS_00006019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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