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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006081 ID=TCONS_00006081|Name=TCONS_00006081|organism=Clytia hemisphaerica|type=transcript|length=1234bp
CCACTGGACTAATAGTACTCAAGATAAGTCCTAACAGCTTACATAAATCA
GCTAGAATACTTTTATTTTGAGGCTGTTTCAATATTGAATCTTCTCCAGA
ATCACCCAATTCATTGAACAAAATATTCACATCTATTCCTGCAGCAATCC
ATTTAAGCTTTTCTTCGCTACTAGTAGCAAGCGTTAGAAGATTTTCCAAA
GCAGAAACAAATTTGCTGGTATCTCTTGTAGCATTGAAGTTGAATTGTTC
AAGCAAATTTTCCAGTGAAACATTTTCTCCCGCCATAATTATGTCCCTTT
CAGCTACCATTATGAAAATGATGAAGCAGGTAAGgtattgctccacaaat
gtgttctATTTGCTACAGCGTAGCGAATAGATTACTTTGCGGCTCGCAGT
CTAGTCCTTGTCGTCCTAAAATATTGTTGAGATGATAGGCAGGCTAAGGA
AGCGCCTCGATGTGATTTAGCTAGCTAAAATTCGAATGAAAACATGACTG
CCATGCATGTTGGTGGATGTTGGTGTCTTGTTTGGTTTGGAatgttttaa
ttatttttaggtatttttatgactttctttctctttttaagTATAATCAA
AAGATACCAAATAAATTAAAGAATCAAATGATAGAATGATTGAAGTAACT
TGTAACGATCGTTTGGGAAAGAAAGTTAGGGTAAAATGCAACCCTGATGA
TACAATAGGAGATTTCAAGAAATTAGTAGCAGCTCAAACTGGTACACGTT
ACGAGAAGATTGTCTTGAAAAAATGgtatACAATTTTTAAAGATCACATT
ACACTTGGGGACTACGAAATCCATGATGGCATGAATATCGAATTGTACTA
TCAATAAAATAAGTCTCGCATTATTTTAAAGGCATCTCGATATTTTCTAG
AAATTCTAGAAATTTAAAATGCTGGGGCTCAAGGGGAGAAAAAAGtcgaa
ctgaataaaaaactacaTCTCTATGTCCTTTATTATTGTGATAAAATGTC
TTAATTATTAGAAACAGCTATAAAAATTTTACCTTTTTGTATCTCATCCT
AGCCCTGTGTTTTTTTGGTTGACAGTTAGTTGAAAAAACACTTCAGAAAT
CAGAAATAGTTATTCTAAAGAATAAAAGGGTCGTAGATTGAACAGTGTTA
CGTTAcacattttcattattttgtaaaGCTTTAtacttaaaatttattat
ttaaaaaaaaatcgaacgCTTTCCTtcttttccc Run BLAST on NCBI transcript from alignment at sc0000062:638522..645676- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006081 ID=TCONS_00006081|Name=TCONS_00006081|organism=Clytia hemisphaerica|type=transcript|length=7155bp|location=Sequence derived from alignment at sc0000062:638522..645676- (Clytia hemisphaerica)
CCACTGGACTAATAGTACTCAAGATAAGTCCTAACAGCTTACATAAATCA
GCTAGAATACTTTTATTTTGAGGCTGTTTCAATATTGAATCTTCTCCAGA
ATCACCCAATTCATTGAACAAAATATTCACATCTATTCCTGCAGCAATCC
ATTTAAGCTTTTCTTCGCTACTAGTAGCAAGCGTTAGAAGATTTTCCAAA
GCAGAAACAAATTTGCTGGTATCTCTTGTAGCATTGAAGTTGAATTGTTC
AAGCAAATTTTCCAGTGAAACATTTTCTCCCGCCATAATTATGTCCCTTT
CAGCTACCATTATGAAAATGATGAAGCAGGTAAGGTATTGCTCCACAAAT
GTGTTCTATTTGCTACAGCGTAGCGAATAGATTACTTTGCGGCTCGCAGT
CTAGTCCTTGTCGTCCTAAAATATTGTTGAGATGATAGGCAGGCTAAGGA
AGCGCCTCGATGTGATTTAGCTAGCTAAAATTCGAATGAAAACATGACTG
CCATGCATGTTGGTGGATGTTGGTGTCTTGTTTGGTTTGGAATGTTTTAA
TTATTTTTAGGTATTTTTATGACTTTCTTTCTCTTTTTAAGTATAATCAA
AAGATACCAAATAAATTAAAGAATCAAATGATAGAATGATTGAAGTAACT
TGTAACGATCGTTTGGGAAAGAAAGTTAGGGTAAAATGCAAGTATCCTTT
TCATCTTCTTGTTGATTGGATTTTTTTAATTTGTCTGGGGAAATTTTTGA
CCTCCTCAATATTCTACCTTTAATGAATTCATTTTGGTCTTGATCAGTGT
AGCTGGAACCTCAATATTCTAGGATTAGAAAAAGCTATACCTGTTATCTT
TTTTCTTTAAAGAATCAACAAGCCATGTCATCAGACCAGGGGATGTCAAT
CGAAGCGATCGAAGCGATCGAAGCAATCGAAGTCGATCGAAGTCGATCGA
AGTGATTGGTCGAATCAATCGAAGTCAATCAAAGTGATTGTCGAATCGAT
TGATGTCGATCAAACCTTTAAAAAAATGTAAATCTTCGATCGATTTCGAT
TGACTTCGATCGACTACGATTGACTTCGATTGACTTCGATCGACTTCGAT
CGACTTTGATATAACTGTCGCAACTTGCTTGCGGCAAATATTTTCACCCA
CCTTGTGTCTCCTTTGAAGATCGGTCTCCACTAGCGCGCGCTGCGATCGC
AACTTTGGCTTCAATAATTTTATTTTTGCTTTGAGAAAAACGCACGCAGA
TCACGCCAATGGAATTCGGGGTACTTTTACCCATATTATAATAATATTAC
CCCGTCTTTGCCAGTTCGGTATAATATGTTATGAATTGCGTTCTTTGCTG
TGCGGCGATGGCTCAACGGATAGAGCGCTGGCTTCCGAATCTGAAGATCT
TTCTTTGGTGATGGTTTGAATCCCACTCGGTGCGAACATTAGACTGGTCG
AAATTGATGGACAAATGATTGACAGGTATGAAAACTCAGTCAGAAATGAG
AAACTAAGTCTCAGAAAGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCTAAGTCTCAGAAACTCAGACAGTCAGAAAAGAGAAAAATAGGATA
AGAGATAGGAAAGAAAAGAAGGTGACTTTTGGCCATCCGATATAACATTT
TCCGTTTACATCCTGCTAGTCTTCTGTCCGTCTAGATCCGAAATTATCTA
ACTCCTAAGTTCTGGCTCTTCTTAGTGGCCAGCTCGGCTATATCGGGAGG
TCCGCAACTTTGGCTCTTTTGGAGGATGGACCGGTTCCGAACACTGGATA
GGCCCCGCTTAGTAAGACTGGTCCTTCTCCACAGAGGGCAAGCGGACATC
CCATTCTTCAATTTCAGTGAGATCTTATTACTGCTACTCTCTGTTTTTAA
ATGAAATTTTTAATCAAAAACAAAAATATATATTTGTTTATTATATATAG
CAGAGTAGAGGAACTTGTAAAATATATACCAGCTGTTTTTTTTTGGTGAT
AAAAGAGAATTAAAAAAAAAAAAAAAAATTTTTTTTTTTTTTTTTAATTT
TTTTTTTTTTTAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAATTTTTT
TTTTTTTTTTTAATTTTTTTTTTTTTTAAAAAAAAAAAAAATTAAAAAAA
AAAAAAAAAATTGGAATTGCTTCATTACCTTTGAATCATCCATCGCTATA
AGTTTTTGTTTACTGAACCCACATTGAGTCCCGTTCAAGATTTTATTATG
TACCCTTATTGAAATTTTCAAATCAAAATTCAGCGACGCAGTAGGGCCGA
TACCCCCGCGGGCCGAAAATAAGGTCCGCTTTTGAGGTTAACGCATGTGC
GCACGTGCACATTTCAGTTGATAGTTTTGCAAATCAAAGATGGCGGCAAA
AGATTTTGTTGATTGCGCCAACTTGATATATCGGGATTTACTAAATCTTA
AAAACCCGACGAAATTACCAACCGACCGACCGACTGAATTTGAAGATGTT
TTATGACGCAAACGGAACATATGATGATGGCTTTGCTCAAAGAAGAGCAA
TCGCAACGCGCATGTGGAGACCGACCTTAAGGCACAAAGGAGACACAAGG
TGGGTGAAATTATTTTCCGCAAGCAAGTTACGACGGTTATCGAAGTTGAT
CGAAGTCAATCGAAGACGATCGAAGTCAATCGAAGTCGATCGAAGTCAAT
CGAAATCGATCGAAGTCGATCATAAGGAGCAAAAAAATGTAAATCTTCGA
TCGACTTCGATCGATACGACAATCACTTCGATTGATTCGACCGATCACTT
CGATCGACTTCGATTGATTCGACCGATCACTTCGATCAACTTCGATTGAC
TTCGATCGATTCGACAATCGAATTTTCCGATTGACATCCCCTGGATCAGA
GTGCGTCCTATCTTACTTACAATTCCTGCATTATACTAAAAATAAACAAA
AAGACCAGACCCGATCAATCGAACTTGTCGAACCAATCGAACAATCGAAC
TAATTGAACAATCGAACTAATTGAACTCCATCGAACAATTAAAGTTCGAT
TAAAAAAATTAATCGAACCTAATCAAACACTCACAATTTTTGAAGCAATA
GCAGCGCAGTTCGATTAGTTTTTCTCCTGTACTGTACTATTTAGAGGTTG
TTTGTAATACGCGATTTGGCTTACGCGTAACACTTGTGGTCAGTAAAAAG
TTCGATTAGTTCGATGATATTAAAATCCTCATATCTTCCCTCGCTTGCAA
AAAGTTTGTCCTGGCACGCGATTGCCAATTTCGACAGTTCCCGGACTTAA
CAGCTTGATGTTTATTGTACCCGGATATTTGTCTATCCCGAAAAAAATCT
GTAGCCCCTCTGTTGCGATTTCGCTTGCGGCTGAGTGGCGGAATACTACG
CCCGCCCAAACAAACCGCTTCTTCTGGCGCTAAAAGGATACAGGAAAAGT
GTGTAATCCGTTATCGGAAGTAATTTCCCGATTTACCTTCCGAATTTGGC
TTTGAAAAGAAGCTAATATGCGGTGGCGGAGCAGCACAAAATTGTCGAAC
AAAATTGGTTTATCGAACTGATCGAACCGAAACCTATTGATCGAGCTTAA
TCAAACACTCACAATCTTTTAAAAAATCTTAGAGTTCGATTAATTTATTT
AATCGAACTTTAATCGTTCGATTGAGTTTGATTAGTTCGATTGTTCGATT
GGTTCGACAAATTCGATTGATCGGGTCTGATCGGGAATTGTCAGTCGAAC
CCACTGTCAACATCAATAAATTACACACATTTCCTCAGAAACTTTTAAAA
TTATCTGCCAGTATGACTTTCTTGAAGCCGTTCCGAAATTTACCAAAAGG
GTTATGTATCGAAATTCCCATGGGAGTTCTTTTCTGAGATTTTTAAAATA
GCTACCTCGGCAAAAAAAATTTTCCCGGTGGTTTCAGGAATAAACAGAAC
TGCTATCATTTGTTTTTTATCAAACCATATATTTAAATTTGCGCTCAAAA
ACACTTGAATAAATAAGTTAGTAATATTCAATTAATATACTACTTGGATC
TCTCAGAAAATAAACACTTACAGAACAACATAGTTTATCATTTGGAATAC
CACCGTGTTTGGACCATTCTATCGCGGGCACAAAATAGGGCTACCTCAGT
GCAAGATTGCCGCGGACGAATAAAAATGAGGCGGCAATCTTGCAATGAGG
GTGCTACTTAGTTTCGGCCCTATTTTACATCCACGATAGAATGGTCCAAA
TACAGGGGTATTCCAAATGATAAACTATGTCGTTCTGTAAGTGTTTATTT
TCTGAGAGATACAAATAGTGTATTGAGTATTATTAACTTATTGTTTTAAG
TATTTTTGAGCGCAAATTTAAATATATGGTTAAATAAAAACAAATCATAG
CAGTTCTGTTTTTTCCTCAAACAGCCCTCGAAATTCAAGTAAAAGTAAGT
CGGCACGTAAGTGCTGTCCAACTCCGGCCGAAGGCCGGCAAAATTTTGCC
GACCTAAGCTTGTTTTTAGGTCGGCAATGCCGATCTGAGCTATATTTTAG
GTCGGCAAAGTTGTTTAAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTCG
GCAAAGTTGTTTAAAGGCTACGGCAATGTTTGTTTTTTTATTTGAGTGCG
ATATGGTTCTTATTAGAGACTTTCATTTTACAGTTACAGGATAAGTTCCC
TCTAAGACAAATAAAGATTGTTTTTCTCTTTTAATACTTTTTGCTGTTAA
GGTTGGCTTTGCTGACCTAAAAGATAACTTATGGTCCGCTGCCGAGAGAA
TCAATGAATATGGTCGGCAATGAACTGCCGACCATACGCACTCTTTGGTC
GGCTTTTAGGTCGGCACTGCCGAATGCCGACCTGAAATTCGAGGGCTGCT
CAAACCCCCGGGAAAAGTTTTTTTGCCGACTTAGCTATTTTACAAATCTC
GGAAAAGAACTCCCTTAGGAATTCGGATACAGAACCCGATTGGTTAATTT
CAGAACGGCTTCAAGAAAGTCATAATGGCAGATAATTTTAAAAGTTTCTG
AGGAAATGTGTGTAATTTATCGATGTTGATGGCTTGTTGATTCTCTAAAG
AAAAAAGATAACAGGTACAGCTTTTTCTAATCCTGGAATATTGAGGTTAC
AGATACACTGAACATTATCACAGGTCATGTTCATGCTAAAATAGCAACGC
ATTGGCAAAATTCTGGAATTTTGCCTTTGTATACTTGGCCCGGACATGGG
CGCGTCATCAGTTAGGGTAATTTCAGGGTCGAACTTTGCAAGTTCGAAAT
CTCCATGTTACCTAAAAAAGATCTGGCCATTCCATGATGGGTCCTTCTGA
AAAATAGCAAAGGGAATATTTGCAGGGTGATTTAGGTACTCCTTGCTCAC
AGACACCTGCACATAAATAAATGTCAGTTAGGTATATTAGGAACAGGCAG
CTTGCATGAGTTTTGGTACCGTCAACTGCTCCAACTTGGGACGATTGGTC
GAAACATGGGACTGTATTTTCACTTACTGTTTAATCTCTTTGACAACAAA
TTTGTTTTGATAACTCCACCAAGTTTATCAATCATACTTTCTGTCATAAC
TTGTCACGATAACTTTCACTAATAGCACACCCTTTTTAACTTTTTTGTTG
TCATTCAAAATGACTGATGGGATTAACAAATAACGAGTGTACAACTTGCC
GCACAAGTGAAGTCAAACGCTCCATAGTTTTGCCACTAATATGGTCTTCA
TTGTTCCAGACGGGTTTTTTTTTATATTTCGATTTAAAAGCCTACTCGGT
GCGAAAGAGACATTTAATATTTTTTTATATACCATTCATTAACTCAATTC
AAATGACTTTGGAGGTTCGGTGAAATGGTGGCCGAATTGTCGCCCCATGT
TTTGTCAGATAGTCCCAAGTTAGAGTAGTTGACTGTAGTTGTTCCTAAAT
GGGATTTTAGCTTACATTTTCTCACTATTGTTCCCATTTTTTCTAATTTC
TTGTATTATTAAGTTAGCCTTCAGGTAGGCCCATTTAGCATGTAGGTTGT
TTTTTTTTAGTTATTGTGTTTGAATACCAAAATATTGTTCCTTAATTTGA
TAATTGATTAATTGTGCATAGCCCTGATGATACAATAGGAGATTTCAAGA
AATTAGTAGCAGCTCAAACTGGTACACGTTACGAGAAGATTGTCTTGAAA
AAATGGTAAGCTGATAAATTTATTGATTATTTTTGTCCTCTTCTAATTCT
CTTTCAAAAGAAAAAAGATAATAGTCTACTGAGACTTTCATTACAAAAGA
TAAAAATCGATTTNGAACCAACATATTTTTGAAAGTGGCTTCCAGTCCCT
GCCATTACTTACAACAAGAATCGGGTAGCTAAAATGGATCTGTTTTTGCT
TGTCATTGTACCGCTTCGTGTGAATTTCGATCACATTTATTTAAAAAATT
GAAGGCACCCAAATAAAAGAATGATAATACACCTTTTTTTTTTTAGGTAT
ACAATTTTTAAAGATCACATTACACTTGGGGACTACGAAATCCATGATGG
CATGAATATCGAATTGTACTATCAATAAAATAAGTCTCGCATTATTTTAA
AGGCATCTCGATATTTTCTAGAAATTCTAGAAATTTAAAATGCTGGGGCT
CAAGGGGAGAAAAAAGTCGAACTGAATAAAAAACTACATCTCTATGTCCT
TTATTATTGTGATAAAATGTCTTAATTATTAGAAACAGCTATAAAAATTT
TACCTTTTTGTATCTCATCCTAGCCCTGTGTTTTTTTGGTTGACAGTTAG
TTGAAAAAACACTTCAGAAATCAGAAATAGTTATTCTAAAGAATAAAAGG
GTCGTAGATTGAACAGTGTTACGTTACACATTTTCATTATTTTGTAAAGC
TTTATACTTAAAATTTATTATTTAAAAAAAAATCGAACGCTTTCCTTCTT
TTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006081-exon-sc0000062-1575043694:644986..645676 | TCONS_00006081-exon-sc0000062-1575043694:644986..645676 | Clytia hemisphaerica | exon |
| TCONS_00006081-exon-sc0000062-1575043694:639272..639355 | TCONS_00006081-exon-sc0000062-1575043694:639272..639355 | Clytia hemisphaerica | exon |
| TCONS_00006081-exon-sc0000062-1575043694:638522..638980 | TCONS_00006081-exon-sc0000062-1575043694:638522..638980 | Clytia hemisphaerica | exon |
| TCONS_00006081-exon-sc0000062-1510915933:644986..645676 | TCONS_00006081-exon-sc0000062-1510915933:644986..645676 | Clytia hemisphaerica | exon |
| TCONS_00006081-exon-sc0000062-1510915933:639272..639355 | TCONS_00006081-exon-sc0000062-1510915933:639272..639355 | Clytia hemisphaerica | exon |
| TCONS_00006081-exon-sc0000062-1510915933:638522..638980 | TCONS_00006081-exon-sc0000062-1510915933:638522..638980 | Clytia hemisphaerica | exon |
| TCONS_00006081-exon-sc0000062-1491911889:644986..645676 | TCONS_00006081-exon-sc0000062-1491911889:644986..645676 | Clytia hemisphaerica | exon |
| TCONS_00006081-exon-sc0000062-1491911889:639272..639355 | TCONS_00006081-exon-sc0000062-1491911889:639272..639355 | Clytia hemisphaerica | exon |
| TCONS_00006081-exon-sc0000062-1491911889:638522..638980 | TCONS_00006081-exon-sc0000062-1491911889:638522..638980 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000062 | supercontig | sc0000062:638522..645676 - |
Blast
BLAST of TCONS_00006081 vs. Swiss-Prot (Human)
Match: UBL5 (Ubiquitin-like protein 5 OS=Homo sapiens GN=UBL5 PE=1 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 7.344e-40 Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 3
Query: 636 MIEVTCNDRLGKKVRVKCNPDDTIGDFKKLVAAQTGTRYEKIVLKKWYTIFKDHITLGDYEIHDGMNIELYYQ 854
MIEV CNDRLGKKVRVKCN DDTIGD KKL+AAQTGTR+ KIVLKKWYTIFKDH++LGDYEIHDGMN+ELYYQ
Sbjct: 1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 73
The following BLAST results are available for this feature:
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