TCONS_00006182 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006182
Unique NameTCONS_00006182
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006182 ID=TCONS_00006182|Name=TCONS_00006182|organism=Clytia hemisphaerica|type=transcript|length=777bp
CCAAGATCAACCTAGTTGACAAAGGAAATAAACTACAGTTGATGGACAAA
ATGCAACAGACACCTAACAACCCATGTATATATTTGCCAGGACCACAGTT
GACTGGCTGTtatcaaactaaaatgaaatatACAAAAAACTAAATGTTAT
ATATTTTATCCTCTAACATATCATATGTGGTAAAGTTCTAGTGTTCATCA
TTCTATATTTCTGGTTCCGATTCTGATTCTCCCTCCCGGCATTCCACTTG
TTCTTCTACTTCATCATTAATAAGTTCATTATCTGGCAGTTCGATTTCGT
CTCTCGATTGTAGAAGATCTACTAAGAAATCAGGTGATTCACAATTTCCA
CACTCACATTTTTGGTGACAAAAGTCACAACATGTATGTTTTGGTTGTAT
TGTGCTTGGTTTTGAATCATAAACCTCAAGAAAAATTTCTCTCCTACAAC
GTTGAGTGTTTGTCACATAATCTCTAATATCCTTTTTCACATAGCGAGTA
ATGCAGCGTGGATAAAGCAGGAGTAAGGCAGAGCATTGAGCGCCATCTCT
TCCTGCTCTACCGGATTCTTGGAAATATGAATCAAGATCTGATGGCACCC
CAAAATGAATGATTCGATGTAGATTCTTGCAATCAATCCCCATTCCAAAT
GCTATGGTGGCTATCAAAATTCTCACCATACCATCAGGGTCTTGAAAGGC
TTTGATTATCCTTTCCTTGATTTCCGGTCTCGTTGTGCGATGAAACATCG
CAAATGGTCTTTCATCATACGTAGAAT
Run BLAST on NCBI

protein sequence of TCONS_00006182-protein

>TCONS_00006182-protein ID=TCONS_00006182-protein|Name=TCONS_00006182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
STYDERPFAMFHRTTRPEIKERIIKAFQDPDGMVRILIATIAFGMGIDCK
NLHRIIHFGVPSDLDSYFQESGRAGRDGAQCSALLLLYPRCITRYVKKDI
RDYVTNTQRCRREIFLEVYDSKPSTIQPKHTCCDFCHQKCECGNCESPDF
LVDLLQSRDEIELPDNELINDEVEEQVECREGESESEPEI
Run BLAST on NCBI

transcript from alignment at sc0000063:54866..55642

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006182 ID=TCONS_00006182|Name=TCONS_00006182|organism=Clytia hemisphaerica|type=transcript|length=777bp|location=Sequence derived from alignment at sc0000063:54866..55642 (Clytia hemisphaerica)
ATTCTACGTATGATGAAAGACCATTTGCGATGTTTCATCGCACAACGAGA
CCGGAAATCAAGGAAAGGATAATCAAAGCCTTTCAAGACCCTGATGGTAT
GGTGAGAATTTTGATAGCCACCATAGCATTTGGAATGGGGATTGATTGCA
AGAATCTACATCGAATCATTCATTTTGGGGTGCCATCAGATCTTGATTCA
TATTTCCAAGAATCCGGTAGAGCAGGAAGAGATGGCGCTCAATGCTCTGC
CTTACTCCTGCTTTATCCACGCTGCATTACTCGCTATGTGAAAAAGGATA
TTAGAGATTATGTGACAAACACTCAACGTTGTAGGAGAGAAATTTTTCTT
GAGGTTTATGATTCAAAACCAAGCACAATACAACCAAAACATACATGTTG
TGACTTTTGTCACCAAAAATGTGAGTGTGGAAATTGTGAATCACCTGATT
TCTTAGTAGATCTTCTACAATCGAGAGACGAAATCGAACTGCCAGATAAT
GAACTTATTAATGATGAAGTAGAAGAACAAGTGGAATGCCGGGAGGGAGA
ATCAGAATCGGAACCAGAAATATAGAATGATGAACACTAGAACTTTACCA
CATATGATATGTTAGAGGATAAAATATATAACATTTAGTTTTTTGTatat
ttcattttagtttgataACAGCCAGTCAACTGTGGTCCTGGCAAATATAT
ACATGGGTTGTTAGGTGTCTGTTGCATTTTGTCCATCAACTGTAGTTTAT
TTCCTTTGTCAACTAGGTTGATCTTGG

Coding sequence (CDS) from alignment at sc0000063:54866..55642

>TCONS_00006182 ID=TCONS_00006182|Name=TCONS_00006182|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0000063:54866..55642 (Clytia hemisphaerica)
TCTACGTATGATGAAAGACCATTTGCGATGTTTCATCGCACAACGAGACC
GGAAATCAAGGAAAGGATAATCAAAGCCTTTCAAGACCCTGATGGTATGG
TGAGAATTTTGATAGCCACCATAGCATTTGGAATGGGGATTGATTGCAAG
AATCTACATCGAATCATTCATTTTGGGGTGCCATCAGATCTTGATTCATA
TTTCCAAGAATCCGGTAGAGCAGGAAGAGATGGCGCTCAATGCTCTGCCT
TACTCCTGCTTTATCCACGCTGCATTACTCGCTATGTGAAAAAGGATATT
AGAGATTATGTGACAAACACTCAACGTTGTAGGAGAGAAATTTTTCTTGA
GGTTTATGATTCAAAACCAAGCACAATACAACCAAAACATACATGTTGTG
ACTTTTGTCACCAAAAATGTGAGTGTGGAAATTGTGAATCACCTGATTTC
TTAGTAGATCTTCTACAATCGAGAGACGAAATCGAACTGCCAGATAATGA
ACTTATTAATGATGAAGTAGAAGAACAAGTGGAATGCCGGGAGGGAGAAT
CAGAATCGGAACCAGAAATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003528XLOC_003528Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006182-proteinTCONS_00006182-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006182-exon-sc0000063-1491911889:54866..55642TCONS_00006182-exon-sc0000063-1491911889:54866..55642Clytia hemisphaericaexon
TCONS_00006182-exon-sc0000063-1510915933:54866..55642TCONS_00006182-exon-sc0000063-1510915933:54866..55642Clytia hemisphaericaexon
TCONS_00006182-exon-sc0000063-1575043694:54866..55642TCONS_00006182-exon-sc0000063-1575043694:54866..55642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:54866..55642 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.9989	1.29785	0.512844	0.304183	2.48942	2.20454	1.63194	3.67965	3.72526	2.10451	1.93404	5.35177	4.00175	4.83297	2.95647	2.47296	4.59297	5.04804	4.15768	2.96213	5.84547	4.85795	2.59933	2.46976	3.77152	3.84889	3.28513	2.97559	2.58107	2.89338
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase
Blast
[Close]
BLAST of TCONS_00006182 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.948e-18
Identity = 53/158 (33.54%), Postives = 82/158 (51.90%), Query Frame = -3 
Query:  329 TTRPEIKERIIKAFQDPDGMVRILIATIAFGMGIDCKNLHRIIHFGVPSDLDSYFQESGRAGRDGAQCSALLLLYPRCI--TRYVKKDIR---------------DYVTNTQRCRREIFLEVYDSKPST-----IQPKHTCCDFCHQKCECGNCESPD 736
            +TR +I  R ++        ++ +IATIAFGMGI+  ++ ++IH+G P D++SY+QE GRAGRDG Q S  +L  P  I   R++  +IR               +   ++ RCRR+I L  ++ K        I     CCD C  + +  +C S D
Sbjct:  801 STRKDIHHRFVR------DEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSRLD--HCYSMD 950
The following BLAST results are available for this feature:
BLAST of TCONS_00006182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN1.948e-1833.54Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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