TCONS_00006220 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006220
Unique Name	TCONS_00006220
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4688

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000066:149269..158606+
coding sequence from alignment at sc0000066:149269..158606+

transcript sequence

>TCONS_00006220 ID=TCONS_00006220|Name=TCONS_00006220|organism=Clytia hemisphaerica|type=transcript|length=4688bp
GATCATCAACAAAGGGGACTGGAAACTGAAAGAGCTATTTGAATTATGTA
CCGTCGTGTACGCGGCAAATAGACCGAAAGCCGTAAGTAGACTAGGTTTG
TACGCAGACTATCTTCCCGCCATTATGGATAgaatgaaaaacatcttttc
atcaaaaatatcgAACACACTTCACGTTCAAAACATTCGATCTGGAAGTG
GGGAGCAAAAAATGAGGATATAAAGCTTTTAAAGATTTGTGTTTCATTTT
CAGTCTTGCATGGCTACTTTGTAGCTTTTGTTTAGCTCCTGATATGTTAC
CAAGTCTTTCACTCTAATTTCCTAAGGAAATTATGAGTAACTTTAGAAAT
AATGGGCAAGTCATTGTTGTTTCCGATGAAAGCCCAGTTTCATCAAAGAA
GGGCACAACAACCACTACCACAGCTGCAACAAACAACAATACCAAAAAGA
AAGATGTAGATAATGAACAAGAAAACAATGACTCTATGTACGATTACAAA
ATAACTGCCCATGAGATACTACGTTCGTCAACTGGGGAATATGAAGTTCT
TGAATTTCTTGGACGTGGAACATTTGGACAAGTTGTTAAGTGTTGGAAGA
GACATACAAATGAATTGGTtgctgtcaaaatttcaaaggatCATCCTTCA
TATAAAAAACAAGCAGAGattgaagttaaaattttgagtttgcTGATGCA
AGAAGATTCAGAGGAATTCAATTTTGTTCGAGCTATAGAATGTTTTTCTC
ACCACAATCACACTTGTGTTGTCTTTGAAATGCTCCAACAAAACTTGTAT
GATTTCCTAAGAAGTTCAAAATTCAAGCCTTTGAGTTTAAAATATGTGAG
ACCAATTTTATACCAAGTTGCAACAACCCTTTTAAAGTTGAAGCAGATGA
ATCTTATTCATTCTGACTTGAAGCCTGAGAATATTATGTTAGTTGAACAA
GAGCGACAGCCATTCCGAGTAAAAGTTGTTGATTTTGGTAGTGCAACTCA
CACATCTAAGGCTGTCACATCAAGCTATCTTCAAAGCCGTTATTATCGTG
CACCAGAGATTATCCTTGGGCTACCATTTGATGAATCAATTGACATGTGG
TCTTTGGGTTGTGTTGCTGCTGAGTTGTTCCTTGGATGGCCTCTCTACCC
TGGTCCAAGTGAATATGACCAGATTTCATACATTATCCAGACAGAAGGAA
TGCCATCACAATCATTGCTGCATATGGCAGCTGCAAGTAAAAGGAACCGA
TATTTCAAGAGAAGCGTCAACGCATTTGGTCATGAAGAGTGGAACTTGAA
GTCTGCACAGGAATATGAACAGGAATCAGGACGACCTCGTAAAGATGAAG
GAAGTCGAAGATACATCTTCAATAGACTTGATGATATTGCTGAGCGAAAC
TTTCCAACAAATTTGACTGGGACTGATTTGATGGCAGAAAGAGTTGACAG
ACAAGTGTTCATCGAGTTATTGAAAAGGATGTTGGATCTAGACGGATACA
CGAGGATCAAACCAGCTGATGTTTTGGGTCACCCTTTCTTCACTTTCACT
CACCTTTCACAATTCTATTACTCAAGAAATGTTCAATCATCTATTCACGT
CATGGACACCATTGCATATTATAAAGCGCAAGCCCTTTCTCAACGGAACG
CTACTACCATGGCAACGGCTAATTGTCGTGTTCAAGCCAGCTCTAGGAAT
GGTCACACCTCCTATTCCACTGTTCCCATGCCCAATAACAAGAATAATGT
ATATCAGGGGCagtcttcaaaatattttgtGCAACAGGCTCCGCCACCTT
CATCCATTCCAATGCCACCACTAGCATGGCAGAACGTCCCCGATGATGTC
GGCTACGTTTCTGAAGAACGTTCTCCTATGTACCGTAGCCCCTGTATGGA
CCCGTGGAACAAACAAGTTCCAAAACCGAAAGACGCCTTCGATCAAAACC
GATACTGGAACCCAATTCCTTTCCCGAAATGGCAATTCCACTTGAACACT
TCATCCAGCCCGAACGAATATCGAGGAAATCCTGGGAAAGATCCCTTGAT
TCCGTCCGGTAAAAGTGGAGTTATTTTCATTGACGATAGTCCGGTTGGAT
CTTGTAGCGTGATCAGTATATCAAGTTCCAGTGATGGCGAAAACGATTTG
GAACAAAGTGATGTAAAAGACGTTAGTATGCtcgatttgaaaaataatca
cTCTTTCACTGCGAACACACCAAGTCCTTTGACGCAAGATTTGGAATCCA
AGAAATTTGTACCGTGCGAAGAGGTGCACAATAACGACCCTGCTCATTGC
TTTACTTCATCACGCCCGAAACGAAGCCGTATCATTCCGCTTATGCATGA
TCCACCGGGTGTTCCGGTCGAACCTAATCATGTTTTCACTGTTCCGGCTC
CTTTGCAAAATCTCGGACACCCGCTGCAAGCACTGTTTAAAAACTCCAGC
AACGCCCGAATTCCACCACCGGCAGATGTTTATTCAGCAGGGCGAGAACA
CCGACATAATAGTCCAACATCAAACGTACCACATACGAATACGGTACATC
ACCCTTCTCAAAGGTTCCATCATAACTATTATTCGCAGGGCGCTGCTATC
CCACCCCCGCCCAACCGAAGACCTTTTGAGGAGATGCAACaatcgcgatt
tttcgaccaaCAACACAATAGCATGAAAAGACATAACAGTTCGTGTTGTT
TTAATCCTATGATGACGTCAGAACAAACAAATGGATGTGGGCGTTGTTTT
CCAGGTGCCCCTTCTTTCGAGGGCGTTCCACCCCACTTACGCACGGGTAC
TGACTATATTCCGTTTTCTGCGCCCCAGCCTCAGGTCGCACTACCGATTG
GGCACGCACAACAGGCACCGGCTAGTCACCATAATGTAAGCGCTTCCTCC
GCAGCATGTAATGTAACGAATTATTCATCTTTCACTTATTTCAGCAAGTA
ATATTTCTTCCTTCACTCGTTTCTTTTCGTTCTGCTCCTTTTACCTGTGG
AttaaatcatttcaaaaattttacttaattgATTATATACCTGATTTTac
gattttattgtttttataaatatttttatttttttgttaNTGATAGTCCG
GTTGGATCTTGTAGCGTGATCAGTATATCAAGTTCAAGTGATGGCGAAAA
TGATTTGGAACAAAGTGATGTAAAAGACGTTAGTATGCtcgatttgaaaa
ataatcacTCTTTCACTGCGAACACACCAAGTCCTTTGACGCAAGATTTG
GAATCCAAGAAATTTGTACCGTGCGAAGAGGTGCACAATAACGACCCTGC
TCATTGCTTTACTTCATCACGCCCGAAACGAAGCCGTATCATTCCGCTTA
TGCATGATCCACCGGGTGTTCCGGTCGAACCTAATCATGTTTTCACTGTT
CCGGCTCCTTTGCAAAATCTCGGACACCCGCTGCAAGCACCGTTTAAAAA
CTCCAGCAACGCCCGAATTCCACCACCGGCAGATGTTTATTCAGCAGGGC
GAGAACACCGACATAATAGTCCAACATCAAACGTACCACATACGAATACG
GTACATCACCCTTCTCAAAGGTTCCATCATAACTATTATTCGCAGGGCGC
TGCTATCCCACCCCCGCCCAACCGAAGACCTTTTGAGGAGATGCAACaat
cgcgatttttcgaccaaCAACACAATAGCATGAAAAGACATAACAGTTCG
TGTTGTTTTAATCCTATGATGACGTCAGAACAAACAAATGGATGTGGGCG
TTGTTTTCCAGGTGCCCCTTCTTTCGAGGGCGTTCCACCCCACTTACGCA
CGGGTACTGACTATATTCCGTTTTCTGCGCCCCAGCCTCAGGTCGCACTA
CCGATTGGGCACGCACAACAGGCACCGGCTAGTCACCATAATGTAAGCGC
TTCCTCCGCAGCATGTAATGTAACGAATTATTCATCTTTCACTTATTTCA
GCAAGTAATATTTCTTCCTTCACTCGTTTCTTTTCGTTCTGCTCCTTTTA
CCTGTGGAttaaatcatttcaaaaattttacttaattgATTATATACCTG
ATTTTacgattttattgtttttataaatatttttatttttttgttatgcC
CTTCGAAATCAGatcttcaatttcaatttcttatCTATGGGCTGGAAAAC
CTAATCActgacaaatcttattttgcttAAAGCTCTTCTTTTCCGCTTCG
CACTCCTCTTCATTCTGTTTTCTCCTTATTTATATCCATTTatattttaa
gatgaaaacattattttatCAGTTTCATATTTATTTTAAGTAAGTAATGC
TTTACTATAAACTTTAAGTATAGCAAGAACTTTTTTTACAAAGGTTCAAT
TTTAAAGAGTCAGGTCTGTCAACCATAGCATGAGCTACTTTAGACTGACA
TATTATCGACCAACATAAATATTGTGCACTTGAAATACCAACAAAATAAA
TGTCTTTTTTGACAGTGGCCTGTTATCGTTTATCACCGCAACCTTTTAAT
ACACAAACAAAGCAGAGAGAGGGAGAGGGAGTATTTTAAGATAAGTTTAT
TGTGAGAGTGTGTGAGGTATTTAAAGATTTACCATGAAGTATTATTCTGA
TAAGTAAGGAGAAAATTGTAAAACCATCCTTTATTATTTTTGTACGGACC
AAAAAAATGCCAAAACAAAACCATGATAAACAAAGAAN

Run BLAST on NCBI

protein sequence of TCONS_00006220-protein

>TCONS_00006220-protein ID=TCONS_00006220-protein|Name=TCONS_00006220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=872bp
MSNFRNNGQVIVVSDESPVSSKKGTTTTTTAATNNNTKKKDVDNEQENND
SMYDYKITAHEILRSSTGEYEVLEFLGRGTFGQVVKCWKRHTNELVAVKI
SKDHPSYKKQAEIEVKILSLLMQEDSEEFNFVRAIECFSHHNHTCVVFEM
LQQNLYDFLRSSKFKPLSLKYVRPILYQVATTLLKLKQMNLIHSDLKPEN
IMLVEQERQPFRVKVVDFGSATHTSKAVTSSYLQSRYYRAPEIILGLPFD
ESIDMWSLGCVAAELFLGWPLYPGPSEYDQISYIIQTEGMPSQSLLHMAA
ASKRNRYFKRSVNAFGHEEWNLKSAQEYEQESGRPRKDEGSRRYIFNRLD
DIAERNFPTNLTGTDLMAERVDRQVFIELLKRMLDLDGYTRIKPADVLGH
PFFTFTHLSQFYYSRNVQSSIHVMDTIAYYKAQALSQRNATTMATANCRV
QASSRNGHTSYSTVPMPNNKNNVYQGQSSKYFVQQAPPPSSIPMPPLAWQ
NVPDDVGYVSEERSPMYRSPCMDPWNKQVPKPKDAFDQNRYWNPIPFPKW
QFHLNTSSSPNEYRGNPGKDPLIPSGKSGVIFIDDSPVGSCSVISISSSS
DGENDLEQSDVKDVSMLDLKNNHSFTANTPSPLTQDLESKKFVPCEEVHN
NDPAHCFTSSRPKRSRIIPLMHDPPGVPVEPNHVFTVPAPLQNLGHPLQA
LFKNSSNARIPPPADVYSAGREHRHNSPTSNVPHTNTVHHPSQRFHHNYY
SQGAAIPPPPNRRPFEEMQQSRFFDQQHNSMKRHNSSCCFNPMMTSEQTN
GCGRCFPGAPSFEGVPPHLRTGTDYIPFSAPQPQVALPIGHAQQAPASHH
NVSASSAACNVTNYSSFTYFSK

Run BLAST on NCBI

transcript from alignment at sc0000066:149269..158606+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006220 ID=TCONS_00006220|Name=TCONS_00006220|organism=Clytia hemisphaerica|type=transcript|length=9338bp|location=Sequence derived from alignment at sc0000066:149269..158606+ (Clytia hemisphaerica)
GATCATCAACAAAGGGGACTGGAAACTGAAAGAGCTATTTGAATTATGTA
CCGTCGTGTACGCGGCAAATAGACCGAAAGCCGTAAGTAGACTAGGTTTG
TACGCAGACTATCTTCCCGCCATTATGGATAgaatgaaaaacatcttttc
atcaaaaatatcgAACACACTTCACGTTCAAAACATTCGATCTGGAAGTG
GGGAGCAAAAAATGAGGATATAAAGCTTTTAAAGATTTGTGTTTCATTTT
CAGTCTTGCATGGCTACTTTGTAGCTTTTGTTTAGCTCCTGATATGTTAC
CAAGTCTTTCACTCTAATTTCCTAAGGAAATTATGAGTAACTTTAGAAAT
AATGGGCAAGTCATTGTTGTTTCCGATGAAAGCCCAGTTTCATCAAAGAA
GGGCACAACAACCACTACCACAGCTGCAACAAACAACAATACCAAAAAGA
AAGATGTAGATAATGAACAAGAAAACAATGACTCTATGTACGATTACAAA
ATAACTGCCCATGAGATACTACGTTCGTCAACTGGGGAATATGAAGTTCT
TGAATTTCTTGGACGTGGAACATTTGGACAAGTTGTTAAGTGTTGGAAGA
GACATACAAATGAATTGGTtgctgtcaaaatttcaaaggatCATCCTTCA
TATAAAAAACAAGCAGAGattgaagttaaaattttgagtttgcTGATGCA
AGAAGATTCAGAGGAATTCAATTTTGTTCGAGCTATAGAATGTTTTTCTC
ACCACAATCACACTTGTGTTGTCTTTGAAATGCTCCAACAAAACTTGTAT
GATTTCCTAAGAAGTTCAAAATTCAAGCCTTTGAGTTTAAAATATGTGAG
ACCAATTTTATACCAAGTTGCAACAACCCTTTTAAAGTTGAAGCAGATGA
ATCTTATTCATTCTGACTTGAAGCCTGAGAATATTATGTTAGTTGAACAA
GAGCGACAGCCATTCCGAGTAAAAGTTGTTGATTTTGGTAGTGCAACTCA
CACATCTAAGGCTGTCACATCAAGCTATCTTCAAAGCCGTTATTATCGGT
AAGATTTTATtatcataaattttctttttgaaagggCCATTCCAGGAAAT
TTGTGTTCCCCCCTCGGAcgaaatacattttttatttttttagtttcgCA
AAAGACGttgctgtttttattttgattgtcttgtaaattttgaatttttg
tttaaaactttTTCCCTTAGAAATTCTGTATCGTCCGCCCctctgttaca
gacaaattttGGAATGGTCcaaagggaactaatttttgcagaatagacct
tttttcaaagaggccaccctgttgaataattatgtagtccagcagaaaaa
caatgataaaaccatgcataattattacaatatgcatgatacagtaatta
tggatggctctatcattgtttttatggctggactatttaattattcaaca
ggacgtcctctttgaaaaaaggtctattcttttGGTGCAAGAGATTGAAA
AAGGACCTAACTTTTTGCAGAGCTTTTTTATGCCATTGGAAGCCACTTtt
gtcaaaattcttttttttttccttagggttaatttaggaaatttaagcaa
aatttattttgtgggAAACTTAGTTTTTTTTGTTGCATACAGTACAGGGG
AAAAATCCTGGGAAAGTGACAAGAATATAAGTGCGGTAATTGGAATCTTA
TGCAAAAGGATAGTACTTAAGTAGTGGTTTcggttaaaatttgaatttct
gtAAGGactagtttttgcaataaatggccaaaatttacagaaatcatgaa
aattaaTCCCAGCTTAATATGTAAAGCAAATTTGCAGATTCAAAGTATGA
TATTTTTAAGCTAATCCTGATTGTGTTAAAGAAGCCTAAAGACGTAATgt
ataaattttgtgaaaaaaccttgaaaactttttgaaattgtgaCTTTCAA
AGTAAATGTTTGTGGAGTactttttgagaaattcaagatttcaaattttg
tgatTTCACAAAccctttttatttcaatttatttaaaaagGCAAGAAATT
GAATttgctacacgcttttttttataagaaatatgtaaatctatttcatc
atgaatattcttatttttttggtccAAATCATCATATAATGTTAACATAT
TCTTAAGgtaaatttttggattttacaaGTCATAGTctcaaaacattgaa
aagtaATGTAAAAACTGAAGACTTATgcatgaaaaaacaaaagaataaat
gcaatatatttttaaatagtacaaattaaatgaaatagaaaattaCAAAT
ACAGAAATATATaagttcataaaaaaagaattaaaaattttcatgatgac
aatattcttacaatattcttaatttttggccattttcatcatggacattt
tgataaagtttattcttattaaaaaaaagcgtgtaacagtGATTTCTAAA
ATCTACCTTCGAATACGATTCTTTTGACAATACTGTAAATGATCATGCAA
AAGGCTCCCAATGTTTTATCCTAAACTTACGGCATTTGGGACATGCAATA
AGTTACAACAAGAAGTGACAAAGTAATGTAACTTTATTTCTGGGGTTTGA
ATGCTAAAATTAAAATATCACTCTACTTCAGATTCAACAAGACATTAGCG
AAAACAATGCCTGAGACAAAAAAAATGTGACAGACCTAGCTAAAAGTAAC
AAACCATATTGATTAACATGAAATGATGCTTAAAGCATTATACTTGACTT
GTTCAATGATTTTTAGTCTGAATTTGGTCACGTTctcacaaaaatattca
aatgaaaAGTGATAAATTTTGGGAATTATCTTTTATTAGAAAAGCAtgac
aatgaaacttttcaatatttcttCAGTGCACCAGAGATTATCCTTGGGCT
ACCATTTGATGAATCAATTGACATGTGGTCTTTGGGTTGTGTTGCTGCTG
AGTTGTTCCTTGGATGGCCTCTCTACCCTGGTCCAAGTGAATATGACCAG
GTAATCggtctttggatgttttaacatcctgtgaatttgaattttcagNT
CAGGTAATCGGTCTTTGGATGTTGTAACATCCTGTGAATTTGATTAAGAA
CTTTAAAAACAAGATACTTGAAGAAAAGTGAAAGCCTTGATTTCTCAGGC
TTCAAAGGAACATTTGATTTTATAAATTCTTTCAGATTCTTTATCACTAG
CATAGAAAAAGACTTAAAAATACCAACccaaaattttgtttcttttctag
ATTTCATACATTATCCAGACAGAAGGAATGCCATCACAATCATTGCTGCA
TATGGCAGCTGCAAGTAAAAGGAACCGATATTTCAAGAGAAGCGTCAACG
CATTTGGTCATGAAGAGTGGAACTTGAAGGTAGCTTTTTTAAATATCTCC
AATAGTTAGCCTCCTGAGAGCTGTCCTGAATTCTAGGAAAATAAAGGAGA
TTAAGTATTTCGAAATAAACATGTTTTGGTTATTCTTCTTCTTGTAAACC
TGATATATCTAGTATTCACTTATGTTTCTaggtaatacatgttatttgat
tttgatgttttccATTAATTTCAGTCTGCACAGGAATATGAACAGGAATC
AGGACGACCTCGTAAAGATGAAGGAAGTCGAAGATACATCTTCAATAGAC
TTGATGATATTGCTGAGGTATGAAATTATATTATTTGTCTTCTATTGATT
GTCCCGCTTCGCTTTTTTTTCGTCTCTTTGATCTATAGAATTGATCTCCt
ttttactgatttcttgaatttctttttcacataACTTTACTATTTTAGCG
AAACTTTCCAACAAATTTGACTGGGACTGATTTGATGGCAGAAAGAGTTG
ACAGGTAACATATTATCATGTCTTGATAAAAATGTTTGCAGGACGCAAAT
AACCTGTTGTTTTATGTTATGAATAGGTATTTATAATAATagttcttttt
ggacctaccccggtggggttggggtggaggtcctataaattaacctctgt
ccgttcgttcgttcgttagttaccaacttttctcgagattggcacATTAg
tttttttggcacaaagatgcataactataaaccctcgaatgcgacgatga
tttttttgcatgaaagtaggtaaaagatggctcaagcatatttttattaa
aaaagaatttttcagctcaaaaaacgcatctttatttaaaagaatcacta
ttaataagcatacatcaatgttcttagccaaattactcaattttttgatg
agatagatattttttttgctcacgaagtcttgaatatgaaagaATATTTC
AAGAGCATGAAATTTTGGtttctaaacgttttttttataagaaacaaacg
actaattttaatagatcgtcactatttgtgttctaaatgattgtttaacg
gtcatgtcatgctcacgtagatatcaattatatatgtgttaaatgcataa
ctaggtaggtccataaaagtatcacttgttaactTCATTTTTTTAGACAA
GTGTTCATCGAGTTATTGAAAAGGATGTTGGATCTAGACGGATACACGAG
GATCAAACCAGCTGATGTTTTGGGTCACCCTTTCTTCACTTTCACTCACC
TTTCACAATTCTATTACTCAAGAAAGTAAGCAATTTAGCGTTACCAGTTT
TGGCCTAGAATGTTTGATTCGccgaatctttgttttttttatatgaaatg
TATCGCTCGTTAAATGACGGTATTTCAAAGtaggaatttcttttttatca
ttGAACATTTTGTCCATTAAAATTCTTGTTTCAAtatatttgattgtttt
tgacGACCACTGTTATCCTGATGGTCAATTAGAAAGTTCGATTGTAGACC
AAAATATGTGACAACTGACTCCTTGTAAGGGAGCTCTCTCTTTCTAAATT
ACTCGAATAACATTGTTTAACCTTGTTTACAAGCCCTTTAAGtcaaattt
tgttcatttttcgtccaggtaggtccaataaatcACCAATAATTTCTTTT
CTCAGTGTTCAATCATCTATTCACGTCATGGACACCATTGCATATTATAA
AGCGCAAGCCCTTTCTCAACGGAACGCTACTACCATGGCAACGGCTAATT
GTCGTGTTCAAGCCAGCTCTAGGAATGGTCACACCTCCTATTCCACTGTT
CCCATGCCCAATAACAAGAATAATGTATATCAGGTGCGAACTTATTTAGT
TTTGAAACCTACCGTCGACCCACTTAAGGTTGCACTTCCTGAACTAAGAT
TCCTCTGACTTTTTCAGAAACGTGTCCACTCTTTTTTAGGGTTATCCCAA
ATTAGTGCAAGGTTGCATCCAGGGGTGCAGAAAAATCAACTCCGTCCGGC
TGAAAAACTGGATAGTTTTTTTATGCTCATTTTTCATCTATCCGGCTTTT
TGGTCTTTTCCTGTCGAAGAGAAGCCAGCAAAATCTTCGGTCTAGGGGTG
TTTCGACGAAAGCCCGAGTTCttcttgaagatttttcaagatttttatct
TGTAGTATCTGGGTATACTGTATTTTATCAAACATCAAGTGCCATACTCC
TTTCATCCATTTGTGTCTCTAATTTTCATGGTATATCTAACGGTGGCCAT
TTCTTTATTCATTTATAGGGGCagtcttcaaaatattttgtgtaAGTAAA
TTCAACCTTATTTTTCGTAAAATGCTGTTTGATAGCATTGTTATTTGCTC
GTTAAGACTGAAATTTTCTCTCGATATGATAAAACTCAACTACTAATCGG
ATTAAAAAGTTTTCCATTAAACGAATTACAGGATATTGTTAGTTTTTGTT
AACGACATACTTGATATTCTAATAATAGAACACTGACATATTGACTTTTT
GAAACGTGATAAGCCGTTACTGAACTAAATATAGCTCAAAGTTGTTGTTG
ACTGCCATTTTTAGATTGGAAGACATTTTCTTTTTAAGGAAtttatctaa
aaatagattttcccTTTCACCTCTTATAATTTGGAAAAGTAATTTAAAAT
TCTCAATTCACCAAATTGTCATTCCTCAAAGTTAAGAAAATATCTCTCCA
AGACACACTGAGATGCCGATTTTTGGAATGCGAAAAGAGGCTTGTAAAAT
TTCCTCTACAATTCATTTCTACGACGATTTTGCATATCAATTTAATAGTC
AGTTTCATATAGTAAAAAGCCACTCAAAAATGGTTTGATATCAGATTTCA
CCCCTATTCAATCGTTTACTAAATCGCTTTAATCGATTCAGATGAGAAGG
AGTTTTTATAGGATACTTTAATCtgctttaataattggtcatttgaagta
ataaaaatgacgcgttctttagaaaaagtaacaaagttgttttattactg
gttaacgaccaatcaaatcaaataagagcttgtaaaagctccaTCTCATC
CCAATCGATTATTCAACTCCGACTTTTCAGGCAACAGGCTCCGCCACCTT
CATCCATTCCAATGCCACCACTAGCATGGCAGAACGTCCCCGATGATGTC
GGCTACGTTTCTGAAGAACGTTCTCCTATGTACCGTAGCCCCTGTATGGA
CCCGTGGAACAAACAAGTTCCAAAACCGAAAGACGCCTTCGATCAAAACC
GATACTGGAACCCAATTCCTTTCCCGAAATGGCAATTCCACTTGAACACT
TCATCCAGCCCGAACGAATATCGAGGAAATCCTGGGAAAGATCCCTTGAT
TCCGTCCGGTAAAAGTGGAGTTATTTTCATTGACGATAGTCCGGTTGGAT
CTTGTAGCGTGATCAGTATATCAAGTTCCAGTGATGGCGAAAACGATTTG
GAACAAAGTGATGTAAAAGACGTTAGTATGCtcgatttgaaaaataatca
cTCTTTCACTGCGAACACACCAAGTCCTTTGACGCAAGATTTGGAATCCA
AGAAATTTGTACCGTGCGAAGAGGTGCACAATAACGACCCTGCTCATTGC
TTTACTTCATCACGCCCGAAACGAAGCCGTATCATTCCGCTTATGCATGA
TCCACCGGGTGTTCCGGTCGAACCTAATCATGTTTTCACTGTTCCGGCTC
CTTTGCAAAATCTCGGACACCCGCTGCAAGCACTGTTTAAAAACTCCAGC
AACGCCCGAATTCCACCACCGGCAGATGTTTATTCAGCAGGGCGAGAACA
CCGACATAATAGTCCAACATCAAACGTACCACATACGAATACGGTACATC
ACCCTTCTCAAAGGTTCCATCATAACTATTATTCGCAGGGCGCTGCTATC
CCACCCCCGCCCAACCGAAGACCTTTTGAGGAGATGCAACaatcgcgatt
tttcgaccaaCAACACAATAGCATGAAAAGACATAACAGTTCGTGTTGTT
TTAATCCTATGATGACGTCAGAACAAACAAATGGATGTGGGCGTTGTTTT
CCAGGTGCCCCTTCTTTCGAGGGCGTTCCACCCCACTTACGCACGGGTAC
TGACTATATTCCGTTTTCTGCGCCCCAGCCTCAGGTCGCACTACCGATTG
GGCACGCACAACAGGCACCGGCTAGTCACCATAATGTAAGCGCTTCCTCC
GCAGCATGTAATGTAACGAATTATTCATCTTTCACTTATTTCAGCAAGTA
ATATTTCTTCCTTCACTCGTTTCTTTTCGTTCTGCTCCTTTTACCTGTGG
AttaaatcatttcaaaaattttacttaattgATTATATACCTGATTTTac
gattttattgtttttataaatatttttatttttttgttaNTGATAGTCCG
GTTGGATCTTGTAGCGTGATCAGTATATCAAGTTCAAGTGATGGCGAAAA
TGATTTGGAACAAAGTGATGTAAAAGACGTTAGTATGCtcgatttgaaaa
ataatcacTCTTTCACTGCGAACACACCAAGTCCTTTGACGCAAGATTTG
GAATCCAAGAAATTTGTACCGTGCGAAGAGGTGCACAATAACGACCCTGC
TCATTGCTTTACTTCATCACGCCCGAAACGAAGCCGTATCATTCCGCTTA
TGCATGATCCACCGGGTGTTCCGGTCGAACCTAATCATGTTTTCACTGTT
CCGGCTCCTTTGCAAAATCTCGGACACCCGCTGCAAGCACCGTTTAAAAA
CTCCAGCAACGCCCGAATTCCACCACCGGCAGATGTTTATTCAGCAGGGC
GAGAACACCGACATAATAGTCCAACATCAAACGTACCACATACGAATACG
GTACATCACCCTTCTCAAAGGTTCCATCATAACTATTATTCGCAGGGCGC
TGCTATCCCACCCCCGCCCAACCGAAGACCTTTTGAGGAGATGCAACaat
cgcgatttttcgaccaaCAACACAATAGCATGAAAAGACATAACAGTTCG
TGTTGTTTTAATCCTATGATGACGTCAGAACAAACAAATGGATGTGGGCG
TTGTTTTCCAGGTGCCCCTTCTTTCGAGGGCGTTCCACCCCACTTACGCA
CGGGTACTGACTATATTCCGTTTTCTGCGCCCCAGCCTCAGGTCGCACTA
CCGATTGGGCACGCACAACAGGCACCGGCTAGTCACCATAATGTAAGCGC
TTCCTCCGCAGCATGTAATGTAACGAATTATTCATCTTTCACTTATTTCA
GCAAGTAATATTTCTTCCTTCACTCGTTTCTTTTCGTTCTGCTCCTTTTA
CCTGTGGAttaaatcatttcaaaaattttacttaattgATTATATACCTG
ATTTTacgattttattgtttttataaatatttttatttttttgttatgcC
CTTCGAAATCAGatcttcaatttcaatttcttatCTATGGGCTGGAAAAC
CTAATCActgacaaatcttattttgcttAAAGCTCTTCTTTTCCGCTTCG
CACTCCTCTTCATTCTGTTTTCTCCTTATTTATATCCATTTatattttaa
gatgaaaacattattttatCAGTTTCATATTTATTTTAAGTAAGTAATGC
TTTACTATAAACTTTAAGTATAGCAAGAACTTTTTTTACAAAGGTTCAAT
TTTAAAGAGTCAGGTCTGTCAACCATAGCATGAGCTACTTTAGACTGACA
TATTATCGACCAACATAAATATTGTGCACTTGAAATACCAACAAAATAAA
TGTCTTTTTTGACAGTGGCCTGTTATCGTTTATCACCGCAACCTTTTAAT
ACACAAACAAAGCAGAGAGAGGGAGAGGGAGTATTTTAAGATAAGTTTAT
TGTGAGAGTGTGTGAGGTATTTAAAGATTTACCATGAAGTATTATTCTGA
TAAGTAAGGAGAAAATTGTAAAACCATCCTTTATTATTTTTGTACGGACC
AAAAAAATGCCAAAACAAAACCATGATAAACAAAGAAN

Coding sequence (CDS) from alignment at sc0000066:149269..158606+

>TCONS_00006220 ID=TCONS_00006220|Name=TCONS_00006220|organism=Clytia hemisphaerica|type=CDS|length=2619bp|location=Sequence derived from alignment at sc0000066:149269..158606+ (Clytia hemisphaerica)
ATGAGTAACTTTAGAAATAATGGGCAAGTCATTGTTGTTTCCGATGAAAG
CCCAGTTTCATCAAAGAAGGGCACAACAACCACTACCACAGCTGCAACAA
ACAACAATACCAAAAAGAAAGATGTAGATAATGAACAAGAAAACAATGAC
TCTATGTACGATTACAAAATAACTGCCCATGAGATACTACGTTCGTCAAC
TGGGGAATATGAAGTTCTTGAATTTCTTGGACGTGGAACATTTGGACAAG
TTGTTAAGTGTTGGAAGAGACATACAAATGAATTGGTtgctgtcaaaatt
tcaaaggatCATCCTTCATATAAAAAACAAGCAGAGattgaagttaaaat
tttgagtttgcTGATGCAAGAAGATTCAGAGGAATTCAATTTTGTTCGAG
CTATAGAATGTTTTTCTCACCACAATCACACTTGTGTTGTCTTTGAAATG
CTCCAACAAAACTTGTATGATTTCCTAAGAAGTTCAAAATTCAAGCCTTT
GAGTTTAAAATATGTGAGACCAATTTTATACCAAGTTGCAACAACCCTTT
TAAAGTTGAAGCAGATGAATCTTATTCATTCTGACTTGAAGCCTGAGAAT
ATTATGTTAGTTGAACAAGAGCGACAGCCATTCCGAGTAAAAGTTGTTGA
TTTTGGTAGTGCAACTCACACATCTAAGGCTGTCACATCAAGCTATCTTC
AAAGCCGTTATTATCGTGCACCAGAGATTATCCTTGGGCTACCATTTGAT
GAATCAATTGACATGTGGTCTTTGGGTTGTGTTGCTGCTGAGTTGTTCCT
TGGATGGCCTCTCTACCCTGGTCCAAGTGAATATGACCAGATTTCATACA
TTATCCAGACAGAAGGAATGCCATCACAATCATTGCTGCATATGGCAGCT
GCAAGTAAAAGGAACCGATATTTCAAGAGAAGCGTCAACGCATTTGGTCA
TGAAGAGTGGAACTTGAAGTCTGCACAGGAATATGAACAGGAATCAGGAC
GACCTCGTAAAGATGAAGGAAGTCGAAGATACATCTTCAATAGACTTGAT
GATATTGCTGAGCGAAACTTTCCAACAAATTTGACTGGGACTGATTTGAT
GGCAGAAAGAGTTGACAGACAAGTGTTCATCGAGTTATTGAAAAGGATGT
TGGATCTAGACGGATACACGAGGATCAAACCAGCTGATGTTTTGGGTCAC
CCTTTCTTCACTTTCACTCACCTTTCACAATTCTATTACTCAAGAAATGT
TCAATCATCTATTCACGTCATGGACACCATTGCATATTATAAAGCGCAAG
CCCTTTCTCAACGGAACGCTACTACCATGGCAACGGCTAATTGTCGTGTT
CAAGCCAGCTCTAGGAATGGTCACACCTCCTATTCCACTGTTCCCATGCC
CAATAACAAGAATAATGTATATCAGGGGCagtcttcaaaatattttgtGC
AACAGGCTCCGCCACCTTCATCCATTCCAATGCCACCACTAGCATGGCAG
AACGTCCCCGATGATGTCGGCTACGTTTCTGAAGAACGTTCTCCTATGTA
CCGTAGCCCCTGTATGGACCCGTGGAACAAACAAGTTCCAAAACCGAAAG
ACGCCTTCGATCAAAACCGATACTGGAACCCAATTCCTTTCCCGAAATGG
CAATTCCACTTGAACACTTCATCCAGCCCGAACGAATATCGAGGAAATCC
TGGGAAAGATCCCTTGATTCCGTCCGGTAAAAGTGGAGTTATTTTCATTG
ACGATAGTCCGGTTGGATCTTGTAGCGTGATCAGTATATCAAGTTCCAGT
GATGGCGAAAACGATTTGGAACAAAGTGATGTAAAAGACGTTAGTATGCt
cgatttgaaaaataatcacTCTTTCACTGCGAACACACCAAGTCCTTTGA
CGCAAGATTTGGAATCCAAGAAATTTGTACCGTGCGAAGAGGTGCACAAT
AACGACCCTGCTCATTGCTTTACTTCATCACGCCCGAAACGAAGCCGTAT
CATTCCGCTTATGCATGATCCACCGGGTGTTCCGGTCGAACCTAATCATG
TTTTCACTGTTCCGGCTCCTTTGCAAAATCTCGGACACCCGCTGCAAGCA
CTGTTTAAAAACTCCAGCAACGCCCGAATTCCACCACCGGCAGATGTTTA
TTCAGCAGGGCGAGAACACCGACATAATAGTCCAACATCAAACGTACCAC
ATACGAATACGGTACATCACCCTTCTCAAAGGTTCCATCATAACTATTAT
TCGCAGGGCGCTGCTATCCCACCCCCGCCCAACCGAAGACCTTTTGAGGA
GATGCAACaatcgcgatttttcgaccaaCAACACAATAGCATGAAAAGAC
ATAACAGTTCGTGTTGTTTTAATCCTATGATGACGTCAGAACAAACAAAT
GGATGTGGGCGTTGTTTTCCAGGTGCCCCTTCTTTCGAGGGCGTTCCACC
CCACTTACGCACGGGTACTGACTATATTCCGTTTTCTGCGCCCCAGCCTC
AGGTCGCACTACCGATTGGGCACGCACAACAGGCACCGGCTAGTCACCAT
AATGTAAGCGCTTCCTCCGCAGCATGTAATGTAACGAATTATTCATCTTT
CACTTATTTCAGCAAGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003566	XLOC_003566	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00006220-protein	TCONS_00006220-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000066	supercontig	sc0000066:149269..158606 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.43307	3.45748	1.24746	0.972613	63.3362	47.1628	53.8076	57.9745	61.5888	67.9624	95.1343	73.2328	85.6999	87.1758	40.0226	43.5032	58.352	72.7724	63.1015	63.3734	105.448	104.985	48.4672	62.4782	86.707	90.0704	71.1451	104.546	42.2952	45.4716

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000719	Prot_kinase_dom
IPR017441	Protein_kinase_ATP_BS
IPR008271	Ser/Thr_kinase_AS
IPR011009	Kinase-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004672	protein kinase activity
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006468	protein phosphorylation

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Blast

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BLAST of TCONS_00006220 vs. Swiss-Prot (Human)
Match: HIPK1 (Homeodomain-interacting protein kinase 1 OS=Homo sapiens GN=HIPK1 PE=1 SV=1)

HSP 1 Score: 500.745 bits (1288), Expect = 2.572e-152
Identity = 236/389 (60.67%), Postives = 296/389 (76.09%), Query Frame = 3

Query:  492 DYKITAHEILRSSTGEYEVLEFLGRGTFGQVVKCWKRHTNELVAVKISKDHPSYKKQAEIEVKILSLLMQEDSEEFNFVRAIECFSHHNHTCVVFEMLQQNLYDFLRSSKFKPLSLKYVRPILYQVATTLLKLKQMNLIHSDLKPENIMLVEQERQPFRVKVVDFGSATHTSKAVTSSYLQSRYYRAPEIILGLPFDESIDMWSLGCVAAELFLGWPLYPGPSEYDQISYIIQTEGMPSQSLLHMAAASKRNRYFKRSVNAFGHEEWNLKSAQEYEQESGRPRKDEGSRRYIFNRLDDIAERNFPTNLTGTDLMAERVDRQVFIELLKRMLDLDGYTRIKPADVLGHPFFTFTHLSQFYYSRNVQSS----------IHVMDTIAYYKA 1628
            DY++  HEIL S T  YEVLEFLGRGTFGQV KCWKR T E+VA+KI K+HPSY +Q +IEV ILS L  E+++E+NFVR+ ECF H NHTC+VFEML+QNLYDFL+ +KF PL LKY+RPIL QVAT L+KLK + LIH+DLKPENIMLV+  RQP+RVKV+DFGSA+H SKAV S+YLQSRYYRAPEIILGLPF E+IDMWSLGCV AELFLGWPLYPG SEYDQI YI QT+G+P++ LL  +A +K  R+F R  N  G+  W LK+ +E+E E+G   K+  +R+YIFN LDD+A+ N  T+L GTD++AE+ DR+ +I+LLK+ML +D   RI P   L H F T THL  F +S +V+S           +H+ DT++  K+
Sbjct:  174 DYQLVQHEILCSMTNSYEVLEFLGRGTFGQVAKCWKRSTKEIVAIKILKNHPSYARQGQIEVSILSRLSSENADEYNFVRSYECFQHKNHTCLVFEMLEQNLYDFLKQNKFSPLPLKYIRPILQQVATALMKLKSLGLIHADLKPENIMLVDPVRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRAPEIILGLPFCEAIDMWSLGCVIAELFLGWPLYPGASEYDQIRYISQTQGLPAEYLL--SAGTKTTRFFNRDPN-LGYPLWRLKTPEEHELETGIKSKE--ARKYIFNCLDDMAQVNMSTDLEGTDMLAEKADRREYIDLLKKMLTIDADKRITPLKTLNHQFVTMTHLLDFPHSNHVKSCFQNMEICKRRVHMYDTVSQIKS 557

The following BLAST results are available for this feature:

BLAST of TCONS_00006220 vs. Swiss-Prot (Human)

BLAST of TCONS_00006220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HIPK1	2.572e-152	60.67	Homeodomain-interacting protein kinase 1 OS=Homo s...	[more]

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TCONS_00006220 (transcript) - C. hemisphaerica