TCONS_00006227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006227
Unique NameTCONS_00006227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3959

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006227 ID=TCONS_00006227|Name=TCONS_00006227|organism=Clytia hemisphaerica|type=transcript|length=3959bp
caattgagcataactttcgatctaatcaaccgaatttgataaatgaccca
tcaaaatttaagtttatttttcttctttccaacaAAATAAGAatgattct
ttaaaaatttttagatttcgagaaaattagtttaaagagagaattttttt
tgtggcgcaccggGTAGTTTCTGACTTTCAAAGATTCAAAGTAGCTAAAA
ATCTAATCTAGAAATGCCAAAAATTGTGACTTTCCAAACCATCAGCCCTA
CTGGTGGCTCGCGATTTAGGCTTGTATAACACCCACAGTACAGCTTACAG
CGAGATGGAAAAGGGTTAATacaaaacttacatgcataattggctaTATT
AATGTGTAATCTCGCAGAAGAAAGAAGATTAAATTTGCATCTATTGAAGA
CTATATACCTTttaagggaataaatttttgcggggattatatttcggGAA
TTTCCGCGAATTTCGCCTTTTTCGCAAAATATAATCCCTTGCGAAAACTT
TCAAACTCTCATAAATTGGCGAAATTTAATCcttgcaaaaattaagtttt
ttacgCTGAAAATTCTaagttttttgataaaattcagaaacaatTATTTA
GACTGCTTGTAATACCATACCAAGATCAGTTCGATTTTaggtactttaaa
tcgcttggggagtggCATATTTCTATACCAAATATTTTAGATTCAAGTAA
ATAGAATCACAGAGTGctcaagaaaattcgaaaaaatttgggcaaaatat
CAAGATAATCAATTGTGTAGGTCCTTAataattttaattcaatttaacAT
ACATGCTACATAGAACATTGTTTCATGTTGGTGCAATCTTCAGGCAATGC
AGTGCGTTgtagattttatcaaaaataaaatgatataaaatatttgaaat
aaaatctacAGTACAATACAATGCAGTATTGCAATAAGATTGCGCAAGCA
TGAAACACTGTGTAGCAgttgcaaatattttaaattgaatcaaaattatt
tttgaaaaggacCTACACAATTGATTAAAAGGTTGTTCTAAATCAAAATG
ACACCTAAATTAAAGTTTTTGTCCCTGAGGGAATTGTCATCATGCGCTTA
CCAACTTCAAGttttgacatggattcatgtatTCATGTACCTCGATTTTC
GTCAGCATTTCATGTTCTTTCCGCTGGagccatcagattttgaatatttt
caaaaatataatattcttgcccagccacctgatgaccccatctggcaggt
ggccaggtggtaaaatttggtgttactgtttaaaattaagttttagaccc
tctaaggatcatctgtgccaaatttcatgcttttatcaccatctgaagta
ttcttatgTTTTATGTGCTAACGGACCTCACTAATAAGAGCTTTTTTGCA
TCTAAAAGGAACTTAAAactcaatgaaagaaattttcaatcatttcagAA
AAATGTCAACCAAAATTAGCTATCCCTGATTGAGCAGCCTTTAGGTTGCA
ATTGCGGGTAAATAcctttaaaagaaatttttcaaatttggaaagaatta
atttttaaaacatggcCTGTTAGTTTGTCATCCTTATTTTTTCAGCTGAG
AAGCAAATTCAGCAAACTTTTGAGGCAGTTCTTCAAACTTGCCAAGATGG
GGCAGGGTGCAGGGCTTTTTGGTTTCTTCATCTTGTATAGATGTCAAAtc
tcaaataaatttataaactttttgactgaaatctttcaaatttgtattca
aattttctgaaagcATTTATCAGCAAGAAGCtatattttaaaactttcat
gAGGGAATCATATATAAATTTAAGCTATTGTGGTAGATTTTCCTTGTCAG
GACCATGATattgttgattttgaaatatttaaaattacTAAGAGCTCTAt
gaggaaaaaaaaaagaagtgttTAAGCACATTTTAAAGAGCTCAATCATA
tagcttttcttttttaattgaaaaaggCATACATTTGTGAactcataatt
tttgaaattattttagtttaaaagaaattgttataattttgaAGCAGGGA
AATAAATATTCATTGCTGTTTTTAGACTATTAATATCCCTCTCTTTTGAT
CTGAAATCTTTCAATGGAGCCACGCCTAACATTTAGACTTTAATgtatta
attttaaaataatgtaGTGGTTTGCACGAGATGTTCATTATCAACAGGAT
CTTAAAATGAATAGTGATTTGTCTGCAATGTCTTATTTATAAAGAAGATA
TCTCTTGATGGCTGGACaggcatttttaaagaaaaatctgCTCACTATcg
ctttgtttttgttgaatattgaaaatgtgtTTGTCTCACGTCCACCAATA
TTCTGGGATCCCTACCATAAATTGTTTTCCTGCAAGGATCCTATTGTGAA
TGTGAAAGAAAATGATTTGTTGAAATTTGTATGCGCAGATAAAGATATCT
CGTCCAAACCAAATGCACATTCTTCAACCCTTCACGAAGTAGCTTATCTT
CTAGACTACACAAAAGAACAAGAATATGAAAATTGTGATGCTAGAAATCA
TGACAATGTATTACTGAACTGCACATCAAAATATATGGTTACACAACACC
GGATCACCCAAAATGCTCTTTCACCTGACGCACCTTCTTTCACACCTGGA
AAGACCTATTATGTGATAGCTCCAAGTTATCGTACAAGCAACATGATTAA
TAACATGGTTGGTGGAAGTTGCAATGACACATCTGATGGTGGATATCATT
TAAAGCTGAAAGTCCATGTTTGTACTgatcaagaaattcaagatggTGAT
TGCAAGTTATGTGAAAGTGAAGGCTGCTATTATGAAGCTTGTGGCAAGCA
ATGTGATGATTGGATTGATCCTGTCGATAATGACTGTTACAAACAAAGAC
TATGCAACAATACACTTTTAAATACACAGTTTAAAGAATATGAAAAGATT
GACAACTGTCAAATCTCTAATAACCCTGCTGTTACAACAGGTAAAAAAAC
TGGCGAGGAAAATAATAAGGATGACTCATACAAATACATGGGCATCGGTA
TTGCATTTGCATTGATTGTAGGTCTCGTTCTTGGCCTGGTCATTAGTAAA
TGGCATTATGGGAAAAAACGTCAGGAGAATTTTGTGGacATAGAAAGGAA
TAACTCCAAGCATAGCCATATCAACGAAGGCTTTCAATATGACAATCGTA
AAAGTAAAGTCACAAATTAAAATCATCAGTCCCTTCtataatatttattt
cattttttagaaatgttgataataaaaatttgtaaatatttttcttttga
gcaTATTATTTATAAGATGTTGATAGTAGACCAAATTTATTTTACCACGT
TAAAATTCTGCattattctatttttattttgatatctGAAACAGTATATT
GTATTACCCTATGTGTATTTTAtatgttgtattttttttttatcgcTTTA
ATAAAATGTTTTAGCTTGATTTCTATTCCCTTTTGAAAGTATGCAAAAGT
ATGGCATACTTCTTTCttctgaaaataaaaagctTCGTTATATTATGCTT
TCATAGTCAAAAGACTTTCGCAAATTCCTCATTTTTTGATCtatgaaatt
tagaaattgTTATTGCTCTAAGTTGAGGGCTATGGTACTACAGATCTTTC
TGTTGAGTGGGTAGTTGGATGAGTAAAATAATTCGATTTACATGTGTGTG
AGTTTCGTTATCTTTATGTATTTCCAAGTATTTAGGAAAATGGCACCTct
atcaaatcaaaatattttatttatgagAACCTCAAAAGGATCTGATTCAT
CAATCATTCTCTTTATGTCCTGATTCAATTTTAAGATTCATAATATATTT
ATGATTTATATAGAAAAAAGGATATAAAAATTAGACTACTGTACTGTATg
tggaaaaaagaaagaaatatgttttgaaaagtctccATTCCTTTAATATG
ATGGAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00006227-protein

>TCONS_00006227-protein ID=TCONS_00006227-protein|Name=TCONS_00006227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MAGQAFLKKNLLTIALFLLNIENVFVSRPPIFWDPYHKLFSCKDPIVNVK
ENDLLKFVCADKDISSKPNAHSSTLHEVAYLLDYTKEQEYENCDARNHDN
VLLNCTSKYMVTQHRITQNALSPDAPSFTPGKTYYVIAPSYRTSNMINNM
VGGSCNDTSDGGYHLKLKVHVCTDQEIQDGDCKLCESEGCYYEACGKQCD
DWIDPVDNDCYKQRLCNNTLLNTQFKEYEKIDNCQISNNPAVTTGKKTGE
ENNKDDSYKYMGIGIAFALIVGLVLGLVISKWHYGKKRQENFVDIERNNS
KHSHINEGFQYDNRKSKVTN
Run BLAST on NCBI

transcript from alignment at sc0000066:256007..262371+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006227 ID=TCONS_00006227|Name=TCONS_00006227|organism=Clytia hemisphaerica|type=transcript|length=6365bp|location=Sequence derived from alignment at sc0000066:256007..262371+ (Clytia hemisphaerica)
caattgagcataactttcgatctaatcaaccgaatttgataaatgaccca
tcaaaatttaagtttatttttcttctttccaacaAAATAAGAatgattct
ttaaaaatttttagatttcgagaaaattagtttaaagagagaattttttt
tgtggcgcaccggGTAGTTTCTGACTTTCAAAGATTCAAAGTAGCTAAAA
ATCTAATCTAGAAATGCCAAAAATTGTGACTTTCCAAACCATCAGCCCTA
CTGGTGGCTCGCGATTTAGGCTTGTATAACACCCACAGTACAGCTTACAG
CGAGATGGAAAAGGGTTAATacaaaacttacatgcataattggctaTATT
AATGTGTAATCTCGCAGAAGAAAGAAGATTAAATTTGCATCTATTGAAGA
CTATATACCTTttaagggaataaatttttgcggggattatatttcggGAA
TTTCCGCGAATTTCGCCTTTTTCGCAAAATATAATCCCTTGCGAAAACTT
TCAAACTCTCATAAATTGGCGAAATTTAATCcttgcaaaaattaagtttt
ttacgCTGAAAATTCTaagttttttgataaaattcagaaacaatTATTTA
GACTGCTTGTAATACCATACCAAGATCAGTTCGATTTTaggtactttaaa
tcgcttggggagtggCATATTTCTATACCAAATATTTTAGATTCAAGTAA
ATAGAATCACAGAGTGctcaagaaaattcgaaaaaatttgggcaaaatat
CAAGATAATCAATTGTGTAGGTCCTTAataattttaattcaatttaacAT
ACATGCTACATAGAACATTGTTTCATGTTGGTGCAATCTTCAGGCAATGC
AGTGCGTTgtagattttatcaaaaataaaatgatataaaatatttgaaat
aaaatctacAGTACAATACAATGCAGTATTGCAATAAGATTGCGCAAGCA
TGAAACACTGTGTAGCAgttgcaaatattttaaattgaatcaaaattatt
tttgaaaaggacCTACACAATTGATTAAAAGGTTGTTCTAAATCAAAATG
ACACCTAAATTAAAGTTTTTGTCCCTGAGGGAATTGTCATCATGCGCTTA
CCAACTTCAAGttttgacatggattcatgtatTCATGTACCTCGATTTTC
GTCAGCATTTCATGTTCTTTCCGCTGGagccatcagattttgaatatttt
caaaaatataatattcttgcccagccacctgatgaccccatctggcaggt
ggccaggtggtaaaatttggtgttactgtttaaaattaagttttagaccc
tctaaggatcatctgtgccaaatttcatgcttttatcaccatctgaagta
ttcttatgTTTTATGTGCTAACGGACCTCACTAATAAGAGCTTTTTTGCA
TCTAAAAGGAACTTAAAactcaatgaaagaaattttcaatcatttcagAA
AAATGTCAACCAAAATTAGCTATCCCTGATTGAGCAGCCTTTAGGTTGCA
ATTGCGGGTAAATAcctttaaaagaaatttttcaaatttggaaagaatta
atttttaaaacatggcCTGTTAGTTTGTCATCCTTATTTTTTCAGCTGAG
AAGCAAATTCAGCAAACTTTTGAGGCAGTTCTTCAAACTTGCCAAGATGG
GGCAGGGTGCAGGGCTTTTTGGTTTCTTCATCTTGTATAGATGTCAAAtc
tcaaataaatttataaactttttgactgaaatctttcaaatttgtattca
aattttctgaaagcATTTATCAGCAAGAAGCtatattttaaaactttcat
gAGGGAATCATATATAAATTTAAGCTATTGTGGTAGATTTTCCTTGTCAG
GACCATGATattgttgattttgaaatatttaaaattacTAAGAGCTCTAt
gaggaaaaaaaaaagaagtgttTAAGCACATTTTAAAGAGCTCAATCATA
tagcttttcttttttaattgaaaaaggCATACATTTGTGAactcataatt
tttgaaattattttagtttaaaagaaattgttataattttgaAGCAGGGA
AATAAATATTCATTGCTGTTTTTAGACTATTAATATCCCTCTCTTTTGAT
CTGAAATCTTTCAATGGAGCCACGCCTAACATTTAGACTTTAATgtatta
attttaaaataatgtaGTGGTTTGCACGAGATGTTCATTATCAACAGGAT
CTTAAAATGAATAGTGATTTGTCTGCAATGTCTTATTTATAAAGGTGAGT
TTCGATTTCTATAATATACTTTTTTATGGATACGGTTTTTTTGTACCAAA
TTTGCATGTTTCATTTTCTAACATGGTGATAACATCATATTTTATTCTGA
GATTCAGCGAAACTTAAAAGAATGTAATTTACAATATTTGATGATTAGGA
CTTCTATTATGTCATCATAAGTTTTTGATGTCATCTTTTGTTACTATAAT
TACTACAGTTTAAACAATTTATTGCTTTGCCATGGAAACGTGATGCTCTC
TATAAAACATGCATTCTATTAAGAGAACAGTTAAAAACAATCTTTTTAGT
TTCAATTATTTATGCCTTTAACTCACTCACTTTCTCTCTGTTAATAGTTG
ACTTGTTATCTTATTTCAGAAGATATCTCTTGATGGCTGGACaggcattt
ttaaagaaaaatctgCTCACTATcgctttgtttttgttgaatattgaaaa
tgtgtTTGTCTCACGTCCACCAATATTCTGGGATCCCTACCATAAATTGT
AAGTAGTTCAATTTCTTATCAAATATCTTTGTGATATCCAAGTTTAACTT
TGTTTTATTAACCTTCCTTTTTGTCTTAATTTTAGGTTTTCCTGCAAGGA
TCCTATTGTGAATGTGAAAGAAAATGATTTGTTGAAATTTGTATGCGCAG
ATAAAGATATCTCGTCCAAACCAAATGCACATTCTTCAACCCTTCACGAA
GTAGCTTATCTTCTAGACTACACAAAAGAACAAGAATATGAAAATTGTGA
TGCTAGAAGTGAGTTAAAATGAAAGACATCTCTTtgtacaaaagaaatta
ttttcattattagGAGATACTCATTTCAGTTgacttaaaacttttaaaat
aagtCTTAATTTGGTGAAAGTTGTATATTGAAATTAAATTACTACTTATT
CATTTCTCTTAGATCATGACAATGTATTACTGAACTGCACATCAAAATAT
ATGGTTACACAACACCGGATCACCCAAAATGCTCTTTCACCTGACGCACC
TTCTTTCACACCTGGAAAGACCTATTATGTGATAGGTAATAAACATTtcc
taaaaaatctttttacaaaatgaaaaagtatAGAAACTATTTGCTAAAGG
TCAGAAATTAAATGAATTGATGCCATCAAAGTTTCTCATTGAAATTCGAA
TTATTTCTCTTTTCAAATAGCTCCAAGTTATCGTACAAGCAACATGATTA
ATAACATGGTTGGTGGAAGTTGCAATGACACATCTGATGGTGGATATCAT
TTAAAGCTGAAAGTCCATGTTTGTACTgatcaagaaattcaagatggTGA
TTGCAAGTTATGTGAAAGTGAAGGCTGCTATTATGAAGGTCAGTTGTTTA
TTAGTCATAATAAGTCTTactgtcaaaaaaatttgtttcctACTGACAGT
TTTTCATTCTCATGCAATTGTTAGGTTGACAATTTTGGTAGAAATATGAT
GAAAACCTGTCCTTGCattcacattatcattgaaaaaaaacttttctttt
ccctTACAGCTTGTGGCAAGCAATGTGACGATTGGATTGATCCTGTCGAT
AATGACTGTTACAAACAAAGACTATGCAACAATACACTTTTAAATACACA
GTTTAAAGAATATGAAAAGATTGACAACTGTCAAATCTCTAATAACCCTG
CTGTTACAACAGGTACTTTAAGNGGTTAAATGAAAGACATCTATTtgtac
aaaagaaattattttcattattagGAGATACTCATTTCAGTTgacttaaa
aattttaaaataagtcTTAATTTGGTGAAAGTTGTATATTGAAATTAAAT
TACTACTTATTCATTTCTCTTAGATCATGACAACGTATTACTGAACTGCA
CATCAAAATATATGGTTACACAACACCGGATCACCCAAAATGCTCTTTCA
CCTGACGCACCTTCTTTCACACCTGGAAAAACCTATTATGTGATAGGTAA
TAAACATTtcctaaaaaatctttttacaaaatgaaaaagtatAGAAACTA
TTTGCTAAAGGTCAGAAATTAAATGAATTGATGCCATCAAAGTTTCTCAT
TGAAATTCGAATTATTTCTCTTTTCAAATAGCTCCAAGTTATCGTACAAG
CAACATGATTAATAACATGGTTGGTGGAAGTTGCAATGACACATCTGATG
GTGGATATCATTTAAAGCTGAAAGTCCATGTTTGTACTgatcaagaaatt
caagatggTGATTGCAAGTTATGTGAAAGTGAAGGCTGCTATTATGAAGG
TCAGTTGTTTATTAGTCATAATAAGTCTTactgtcaaaaaaatttgtttc
ctACTGACAGTTTTTCATTCTCATGCAATTGTTAGGTTGACAATTTTGGT
AGAAATATGATGAAAACCTGTCCTTGCattcacattatcattgaaaaaaa
acttttcttttccctTACAGCTTGTGGCAAGCAATGTGATGATTGGATTG
ATCCTGTCGATAATGACTGTTACAAACAAAGACTATGCAACAATACACTT
TTAAATACACAGTTTAAAGAATATGAAAAGATTGACAACTGTCAAATCTC
TAATAACCCTGCTGTTACAACAGGTACTTTAAGCACAACAGGTGCTTTAA
GCACAACTGGAAGTGTCAGCACTGTTTACACTGTTAGTACACTCAGCAGC
ACCAGCACCACAAGTTCAAGTTCAACCAGTTCAGTCACAGTCAGTCCTGT
TCCAGGTAACTCAGTCAGTAATAATAAGTAATCTAAAAGCTTTGTTTATA
TGCTTAAAAGCTAGGTAGCACTTTGACAGTAAACTTATTCTTGAGGTATT
TGCCCAGTATGATGTGTatttatattgaaaattttagtaacagacttttt
caagttttagtaAACTTTAGATAACTGGATAAATTGAGTTGTTTTAGTTT
ACCTTGTACGTCCTTTTTCTTTCAGGTAAAAAAACTGGCGAGGAAAATAA
TAAGGATGACTCATACAAATACATGGGCATCGGTATTGCATTTGCATTGA
TTGTAGGTCTCGTTCTTGGCCTGGTCATTAGTAAATGGCATTATGGGAAA
AAACGTCAGGAGAATTTTGTGGGTAAGTTCCCTTAAATTCTTTGCATtct
taaatatttctttttatatatgaGCTGACCAGTGCTCAATTAAGCCAATT
ATATATAGATAAATAGGAAAGTAGGAAAATTGGTAGAGGTACTTTTACCA
CAGCTAATACTTTTAATTAATATGACTTATATTGTCTTGACACAGGTTAC
GTCATCCGTTTTTTAGatagaatttctttttctttcatttcagacATAGA
AAGGAATAACTCCAAGCATAGCCATATCAACGAAGGCTTTCAATATGACA
ATCGTAAAAGTAAAGTCACAAATTAAAATCATCAGTCCCTTCtataatat
ttatttcattttttagaaatgttgataataaaaatttgtaaatatttttc
ttttgagcaTATTATTTATAAGATGTTGATAGTAGACCAAATTTATTTTA
CCACGTTAAAATTCTGCattattctatttttattttgatatctGAAACAG
TATATTGTATTACCCTATGTGTATTTTAtatgttgtattttttttttatc
gcTTTAATAAAATGTTTTAGCTTGATTTCTATTCCCTTTTGAAAGTATGC
AAAAGTATGGCATACTTCTTTCttctgaaaataaaaagctTCGTTATATT
ATGCTTTCATAGTCAAAAGACTTTCGCAAATTCCTCATTTTTTGATCtat
gaaatttagaaattgTTATTGCTCTAAGTTGAGGGCTATGGTACTACAGA
TCTTTCTGTTGAGTGGGTAGTTGGATGAGTAAAATAATTCGATTTACATG
TGTGTGAGTTTCGTTATCTTTATGTATTTCCAAGTATTTAGGAAAATGGC
ACCTctatcaaatcaaaatattttatttatgagAACCTCAAAAGGATCTG
ATTCATCAATCATTCTCTTTATGTCCTGATTCAATTTTAAGATTCATAAT
ATATTTATGATTTATATAGAAAAAAGGATATAAAAATTAGACTACTGTAC
TGTATgtggaaaaaagaaagaaatatgttttgaaaagtctccATTCCTTT
AATATGATGGAAAAG

Coding sequence (CDS) from alignment at sc0000066:256007..262371+

>TCONS_00006227 ID=TCONS_00006227|Name=TCONS_00006227|organism=Clytia hemisphaerica|type=CDS|length=7704bp|location=Sequence derived from alignment at sc0000066:256007..262371+ (Clytia hemisphaerica)
ATGGCTGGACaggcatttttaaagaaaaatctgCTCACTATcgctttgtt
tttgttgaatattgaaaatgtgtTTGTCTCACGTCCACCAATATTCTGGG
ATCCCTACCATAAATTGTTTTCCTGCAAGGATCCTATTGTGAATGTGAAA
GAAAATGATTTGTTGAAATTTGTATGCGCAGATAAAGATATCTCGTCCAA
ACCAAATGCACATTCTTCAACCCTTCACGAAGTAGCTTATCTTCTAGACT
ACACAAAAGAACAAGAATATGAAAATTGTGATGCTAGAAATCATGACAAT
GTATTACTGAACTGCACATCAAAATATATGGTTACACAACACCGGATCAC
CCAAAATGCTCTTTCACCTGACGCACCTTCTTTCACACCTGGAAAGACCT
ATTATGTGATAGCTCCAAGTTATCGTACAAGCAACATGATTAATAACATG
GTTGGTGGAAGTTGCAATGACACATCTGATGGTGGATATCATTTAAAGCT
GAAAGTCCATGTTTGTACTgatcaagaaattcaagatggTGATTGCAAGT
TATGTGAAAGTGAAGGCTGCTATTATGAAGCTTGTGGCAAGCAATGTGAT
GATTGGATTGATCCTGTCGATAATGACTGTTACAAACAAAGACTATGCAA
CAATACACTTTTAAATACACAGTTTAAAGAATATGAAAAGATTGACAACT
GTCAAATCTCTAATAACCCTGCTGTTACAACAGGTAAAAAAACTGGCGAG
GAAAATAATAAGGATGACTCATACAAATACATGGGCATCGGTATTGCATT
TGCATTGATTGTAGGTCTCGTTCTTGGCCTGGTCATTAGTAAATGGCATT
ATGGGAAAAAACGTCAGGAGAATTTTGTGGacATAGAAAGGAATAACTCC
AAGCATAGCCATATCAACGAAGGCTTTCAATATGACAATCGTAAAAGTAA
AGTCACAAATTAAATGGCTGGACaggcatttttaaagaaaaatctgCTCA
CTATcgctttgtttttgttgaatattgaaaatgtgtTTGTCTCACGTCCA
CCAATATTCTGGGATCCCTACCATAAATTGTTTTCCTGCAAGGATCCTAT
TGTGAATGTGAAAGAAAATGATTTGTTGAAATTTGTATGCGCAGATAAAG
ATATCTCGTCCAAACCAAATGCACATTCTTCAACCCTTCACGAAGTAGCT
TATCTTCTAGACTACACAAAAGAACAAGAATATGAAAATTGTGATGCTAG
AAATCATGACAATGTATTACTGAACTGCACATCAAAATATATGGTTACAC
AACACCGGATCACCCAAAATGCTCTTTCACCTGACGCACCTTCTTTCACA
CCTGGAAAGACCTATTATGTGATAGCTCCAAGTTATCGTACAAGCAACAT
GATTAATAACATGGTTGGTGGAAGTTGCAATGACACATCTGATGGTGGAT
ATCATTTAAAGCTGAAAGTCCATGTTTGTACTgatcaagaaattcaagat
ggTGATTGCAAGTTATGTGAAAGTGAAGGCTGCTATTATGAAGCTTGTGG
CAAGCAATGTGATGATTGGATTGATCCTGTCGATAATGACTGTTACAAAC
AAAGACTATGCAACAATACACTTTTAAATACACAGTTTAAAGAATATGAA
AAGATTGACAACTGTCAAATCTCTAATAACCCTGCTGTTACAACAGGTAA
AAAAACTGGCGAGGAAAATAATAAGGATGACTCATACAAATACATGGGCA
TCGGTATTGCATTTGCATTGATTGTAGGTCTCGTTCTTGGCCTGGTCATT
AGTAAATGGCATTATGGGAAAAAACGTCAGGAGAATTTTGTGGacATAGA
AAGGAATAACTCCAAGCATAGCCATATCAACGAAGGCTTTCAATATGACA
ATCGTAAAAGTAAAGTCACAAATTAAATGGCTGGACaggcatttttaaag
aaaaatctgCTCACTATcgctttgtttttgttgaatattgaaaatgtgtT
TGTCTCACGTCCACCAATATTCTGGGATCCCTACCATAAATTGTTTTCCT
GCAAGGATCCTATTGTGAATGTGAAAGAAAATGATTTGTTGAAATTTGTA
TGCGCAGATAAAGATATCTCGTCCAAACCAAATGCACATTCTTCAACCCT
TCACGAAGTAGCTTATCTTCTAGACTACACAAAAGAACAAGAATATGAAA
ATTGTGATGCTAGAAATCATGACAATGTATTACTGAACTGCACATCAAAA
TATATGGTTACACAACACCGGATCACCCAAAATGCTCTTTCACCTGACGC
ACCTTCTTTCACACCTGGAAAGACCTATTATGTGATAGCTCCAAGTTATC
GTACAAGCAACATGATTAATAACATGGTTGGTGGAAGTTGCAATGACACA
TCTGATGGTGGATATCATTTAAAGCTGAAAGTCCATGTTTGTACTgatca
agaaattcaagatggTGATTGCAAGTTATGTGAAAGTGAAGGCTGCTATT
ATGAAGCTTGTGGCAAGCAATGTGATGATTGGATTGATCCTGTCGATAAT
GACTGTTACAAACAAAGACTATGCAACAATACACTTTTAAATACACAGTT
TAAAGAATATGAAAAGATTGACAACTGTCAAATCTCTAATAACCCTGCTG
TTACAACAGGTAAAAAAACTGGCGAGGAAAATAATAAGGATGACTCATAC
AAATACATGGGCATCGGTATTGCATTTGCATTGATTGTAGGTCTCGTTCT
TGGCCTGGTCATTAGTAAATGGCATTATGGGAAAAAACGTCAGGAGAATT
TTGTGGacATAGAAAGGAATAACTCCAAGCATAGCCATATCAACGAAGGC
TTTCAATATGACAATCGTAAAAGTAAAGTCACAAATTAAATGGCTGGACa
ggcatttttaaagaaaaatctgCTCACTATcgctttgtttttgttgaata
ttgaaaatgtgtTTGTCTCACGTCCACCAATATTCTGGGATCCCTACCAT
AAATTGTTTTCCTGCAAGGATCCTATTGTGAATGTGAAAGAAAATGATTT
GTTGAAATTTGTATGCGCAGATAAAGATATCTCGTCCAAACCAAATGCAC
ATTCTTCAACCCTTCACGAAGTAGCTTATCTTCTAGACTACACAAAAGAA
CAAGAATATGAAAATTGTGATGCTAGAAATCATGACAATGTATTACTGAA
CTGCACATCAAAATATATGGTTACACAACACCGGATCACCCAAAATGCTC
TTTCACCTGACGCACCTTCTTTCACACCTGGAAAGACCTATTATGTGATA
GCTCCAAGTTATCGTACAAGCAACATGATTAATAACATGGTTGGTGGAAG
TTGCAATGACACATCTGATGGTGGATATCATTTAAAGCTGAAAGTCCATG
TTTGTACTgatcaagaaattcaagatggTGATTGCAAGTTATGTGAAAGT
GAAGGCTGCTATTATGAAGCTTGTGGCAAGCAATGTGATGATTGGATTGA
TCCTGTCGATAATGACTGTTACAAACAAAGACTATGCAACAATACACTTT
TAAATACACAGTTTAAAGAATATGAAAAGATTGACAACTGTCAAATCTCT
AATAACCCTGCTGTTACAACAGGTAAAAAAACTGGCGAGGAAAATAATAA
GGATGACTCATACAAATACATGGGCATCGGTATTGCATTTGCATTGATTG
TAGGTCTCGTTCTTGGCCTGGTCATTAGTAAATGGCATTATGGGAAAAAA
CGTCAGGAGAATTTTGTGGacATAGAAAGGAATAACTCCAAGCATAGCCA
TATCAACGAAGGCTTTCAATATGACAATCGTAAAAGTAAAGTCACAAATT
AAATGGCTGGACaggcatttttaaagaaaaatctgCTCACTATcgctttg
tttttgttgaatattgaaaatgtgtTTGTCTCACGTCCACCAATATTCTG
GGATCCCTACCATAAATTGTTTTCCTGCAAGGATCCTATTGTGAATGTGA
AAGAAAATGATTTGTTGAAATTTGTATGCGCAGATAAAGATATCTCGTCC
AAACCAAATGCACATTCTTCAACCCTTCACGAAGTAGCTTATCTTCTAGA
CTACACAAAAGAACAAGAATATGAAAATTGTGATGCTAGAAATCATGACA
ATGTATTACTGAACTGCACATCAAAATATATGGTTACACAACACCGGATC
ACCCAAAATGCTCTTTCACCTGACGCACCTTCTTTCACACCTGGAAAGAC
CTATTATGTGATAGCTCCAAGTTATCGTACAAGCAACATGATTAATAACA
TGGTTGGTGGAAGTTGCAATGACACATCTGATGGTGGATATCATTTAAAG
CTGAAAGTCCATGTTTGTACTgatcaagaaattcaagatggTGATTGCAA
GTTATGTGAAAGTGAAGGCTGCTATTATGAAGCTTGTGGCAAGCAATGTG
ATGATTGGATTGATCCTGTCGATAATGACTGTTACAAACAAAGACTATGC
AACAATACACTTTTAAATACACAGTTTAAAGAATATGAAAAGATTGACAA
CTGTCAAATCTCTAATAACCCTGCTGTTACAACAGGTAAAAAAACTGGCG
AGGAAAATAATAAGGATGACTCATACAAATACATGGGCATCGGTATTGCA
TTTGCATTGATTGTAGGTCTCGTTCTTGGCCTGGTCATTAGTAAATGGCA
TTATGGGAAAAAACGTCAGGAGAATTTTGTGGacATAGAAAGGAATAACT
CCAAGCATAGCCATATCAACGAAGGCTTTCAATATGACAATCGTAAAAGT
AAAGTCACAAATTAAATGGCTGGACaggcatttttaaagaaaaatctgCT
CACTATcgctttgtttttgttgaatattgaaaatgtgtTTGTCTCACGTC
CACCAATATTCTGGGATCCCTACCATAAATTGTTTTCCTGCAAGGATCCT
ATTGTGAATGTGAAAGAAAATGATTTGTTGAAATTTGTATGCGCAGATAA
AGATATCTCGTCCAAACCAAATGCACATTCTTCAACCCTTCACGAAGTAG
CTTATCTTCTAGACTACACAAAAGAACAAGAATATGAAAATTGTGATGCT
AGAAATCATGACAATGTATTACTGAACTGCACATCAAAATATATGGTTAC
ACAACACCGGATCACCCAAAATGCTCTTTCACCTGACGCACCTTCTTTCA
CACCTGGAAAGACCTATTATGTGATAGCTCCAAGTTATCGTACAAGCAAC
ATGATTAATAACATGGTTGGTGGAAGTTGCAATGACACATCTGATGGTGG
ATATCATTTAAAGCTGAAAGTCCATGTTTGTACTgatcaagaaattcaag
atggTGATTGCAAGTTATGTGAAAGTGAAGGCTGCTATTATGAAGCTTGT
GGCAAGCAATGTGATGATTGGATTGATCCTGTCGATAATGACTGTTACAA
ACAAAGACTATGCAACAATACACTTTTAAATACACAGTTTAAAGAATATG
AAAAGATTGACAACTGTCAAATCTCTAATAACCCTGCTGTTACAACAGGT
AAAAAAACTGGCGAGGAAAATAATAAGGATGACTCATACAAATACATGGG
CATCGGTATTGCATTTGCATTGATTGTAGGTCTCGTTCTTGGCCTGGTCA
TTAGTAAATGGCATTATGGGAAAAAACGTCAGGAGAATTTTGTGGacATA
GAAAGGAATAACTCCAAGCATAGCCATATCAACGAAGGCTTTCAATATGA
CAATCGTAAAAGTAAAGTCACAAATTAAATGGCTGGACaggcatttttaa
agaaaaatctgCTCACTATcgctttgtttttgttgaatattgaaaatgtg
tTTGTCTCACGTCCACCAATATTCTGGGATCCCTACCATAAATTGTTTTC
CTGCAAGGATCCTATTGTGAATGTGAAAGAAAATGATTTGTTGAAATTTG
TATGCGCAGATAAAGATATCTCGTCCAAACCAAATGCACATTCTTCAACC
CTTCACGAAGTAGCTTATCTTCTAGACTACACAAAAGAACAAGAATATGA
AAATTGTGATGCTAGAAATCATGACAATGTATTACTGAACTGCACATCAA
AATATATGGTTACACAACACCGGATCACCCAAAATGCTCTTTCACCTGAC
GCACCTTCTTTCACACCTGGAAAGACCTATTATGTGATAGCTCCAAGTTA
TCGTACAAGCAACATGATTAATAACATGGTTGGTGGAAGTTGCAATGACA
CATCTGATGGTGGATATCATTTAAAGCTGAAAGTCCATGTTTGTACTgat
caagaaattcaagatggTGATTGCAAGTTATGTGAAAGTGAAGGCTGCTA
TTATGAAGCTTGTGGCAAGCAATGTGATGATTGGATTGATCCTGTCGATA
ATGACTGTTACAAACAAAGACTATGCAACAATACACTTTTAAATACACAG
TTTAAAGAATATGAAAAGATTGACAACTGTCAAATCTCTAATAACCCTGC
TGTTACAACAGGTAAAAAAACTGGCGAGGAAAATAATAAGGATGACTCAT
ACAAATACATGGGCATCGGTATTGCATTTGCATTGATTGTAGGTCTCGTT
CTTGGCCTGGTCATTAGTAAATGGCATTATGGGAAAAAACGTCAGGAGAA
TTTTGTGGacATAGAAAGGAATAACTCCAAGCATAGCCATATCAACGAAG
GCTTTCAATATGACAATCGTAAAAGTAAAGTCACAAATTAAATGGCTGGA
CaggcatttttaaagaaaaatctgCTCACTATcgctttgtttttgttgaa
tattgaaaatgtgtTTGTCTCACGTCCACCAATATTCTGGGATCCCTACC
ATAAATTGTTTTCCTGCAAGGATCCTATTGTGAATGTGAAAGAAAATGAT
TTGTTGAAATTTGTATGCGCAGATAAAGATATCTCGTCCAAACCAAATGC
ACATTCTTCAACCCTTCACGAAGTAGCTTATCTTCTAGACTACACAAAAG
AACAAGAATATGAAAATTGTGATGCTAGAAATCATGACAATGTATTACTG
AACTGCACATCAAAATATATGGTTACACAACACCGGATCACCCAAAATGC
TCTTTCACCTGACGCACCTTCTTTCACACCTGGAAAGACCTATTATGTGA
TAGCTCCAAGTTATCGTACAAGCAACATGATTAATAACATGGTTGGTGGA
AGTTGCAATGACACATCTGATGGTGGATATCATTTAAAGCTGAAAGTCCA
TGTTTGTACTgatcaagaaattcaagatggTGATTGCAAGTTATGTGAAA
GTGAAGGCTGCTATTATGAAGCTTGTGGCAAGCAATGTGATGATTGGATT
GATCCTGTCGATAATGACTGTTACAAACAAAGACTATGCAACAATACACT
TTTAAATACACAGTTTAAAGAATATGAAAAGATTGACAACTGTCAAATCT
CTAATAACCCTGCTGTTACAACAGGTAAAAAAACTGGCGAGGAAAATAAT
AAGGATGACTCATACAAATACATGGGCATCGGTATTGCATTTGCATTGAT
TGTAGGTCTCGTTCTTGGCCTGGTCATTAGTAAATGGCATTATGGGAAAA
AACGTCAGGAGAATTTTGTGGacATAGAAAGGAATAACTCCAAGCATAGC
CATATCAACGAAGGCTTTCAATATGACAATCGTAAAAGTAAAGTCACAAA
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003570XLOC_003570Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006227-exon-sc0000066-1491911889:256007..258250TCONS_00006227-exon-sc0000066-1491911889:256007..258250Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1510915933:256007..258250TCONS_00006227-exon-sc0000066-1510915933:256007..258250Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1575043694:256007..258250TCONS_00006227-exon-sc0000066-1575043694:256007..258250Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1491911889:258626..258754TCONS_00006227-exon-sc0000066-1491911889:258626..258754Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1510915933:258626..258754TCONS_00006227-exon-sc0000066-1510915933:258626..258754Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1575043694:258626..258754TCONS_00006227-exon-sc0000066-1575043694:258626..258754Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1491911889:258842..259014TCONS_00006227-exon-sc0000066-1491911889:258842..259014Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1510915933:258842..259014TCONS_00006227-exon-sc0000066-1510915933:258842..259014Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1575043694:258842..259014TCONS_00006227-exon-sc0000066-1575043694:258842..259014Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1491911889:259169..259291TCONS_00006227-exon-sc0000066-1491911889:259169..259291Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1510915933:259169..259291TCONS_00006227-exon-sc0000066-1510915933:259169..259291Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1575043694:259169..259291TCONS_00006227-exon-sc0000066-1575043694:259169..259291Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1491911889:259427..259449TCONS_00006227-exon-sc0000066-1491911889:259427..259449Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1510915933:259427..259449TCONS_00006227-exon-sc0000066-1510915933:259427..259449Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1575043694:259427..259449TCONS_00006227-exon-sc0000066-1575043694:259427..259449Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1491911889:260361..260505TCONS_00006227-exon-sc0000066-1491911889:260361..260505Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1510915933:260361..260505TCONS_00006227-exon-sc0000066-1510915933:260361..260505Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1575043694:260361..260505TCONS_00006227-exon-sc0000066-1575043694:260361..260505Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1491911889:260677..260829TCONS_00006227-exon-sc0000066-1491911889:260677..260829Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1510915933:260677..260829TCONS_00006227-exon-sc0000066-1510915933:260677..260829Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1575043694:260677..260829TCONS_00006227-exon-sc0000066-1575043694:260677..260829Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1491911889:261182..261328TCONS_00006227-exon-sc0000066-1491911889:261182..261328Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1510915933:261182..261328TCONS_00006227-exon-sc0000066-1510915933:261182..261328Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1575043694:261182..261328TCONS_00006227-exon-sc0000066-1575043694:261182..261328Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1491911889:261550..262371TCONS_00006227-exon-sc0000066-1491911889:261550..262371Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1510915933:261550..262371TCONS_00006227-exon-sc0000066-1510915933:261550..262371Clytia hemisphaericaexon
TCONS_00006227-exon-sc0000066-1575043694:261550..262371TCONS_00006227-exon-sc0000066-1575043694:261550..262371Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006227-proteinTCONS_00006227-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:256007..262371 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0417324	0.0002263	0.60926	0.706294	0	0	1.38619e-06	2.24885e-10	0	0	0	0	0	0	0.0637267	0.00412227	0.0969808	0.068506	0.104279	0.087805	0.21656	0.226526	0.124758	0.0831746	0	0	0.269809	0.254509	0.347939	0.360411
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008972Cupredoxin
IPR001799Ephrin_RBD
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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