TCONS_00006233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006233
Unique NameTCONS_00006233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006233 ID=TCONS_00006233|Name=TCONS_00006233|organism=Clytia hemisphaerica|type=transcript|length=1852bp
AATCTTTCAATGGAGCCACGCCTAACATTTAGACTTTAATgtattaattt
taaaataatgtaGTGGTTTGCACGAGATGTTCATTATCAACAGGATCTTA
AAATGAATAGTGATTTGTCTGCAATGTCTTATTTATAAAGATATCTCTTG
ATGGCTGGACaggcatttttaaagaaaaatctgCTCACTATcgctttgtt
tttgttgaatattgaaaatgtgtTTGTCTCACGTCCACCAATATTCTGGG
ATCCCTACCATAAATTGTTTTCCTGCAAGGATCCTATTGTGAATGTGAAA
GAAAATGATTTGTTGAAATTTGTATGCGCAGATAAAGATATCTCGTCCAA
ACCAAATGCACATTCTTCAACCCTTCACGAAGTAGCTTATCTTCTAGACT
ACACAAAAGAACAAGAATATGAAAATTGTGATGCTAGAAATCATGACAAT
GTATTACTGAACTGCACATCAAAATATATGGTTACACAACACCGGATCAC
CCAAAATGCTCTTTCACCTGACGCACCTTCTTTCACACCTGGAAAGACCT
ATTATGTGATAGCTCCAAGTTATCGTACAAGCAACATGATTAATAACATG
GTTGGTGGAAGTTGCAATGACACATCTGATGGTGGATATCATTTAAAGCT
GAAAGTCCATGTTTGTACTgatcaagaaattcaagatggTGATTGCAAGT
TATGTGAAAGTGAAGGCTGCTATTATGAAGCTTGTGGCAAGCAATGTGAT
GATTGGATTGATCCTGTCGATAATGACTGTTACAAACAAAGACTATGCAA
CAATACACTTTTAAATACACAGTTTAAAGAATATGAAAAGATTGACAACT
GTCAAATCTCTAATAACCCTGCTGTTACAACAGGTAAAAAAACTGGCGAG
GAAAATAATAAGGATGACTCATACAAATACATGGGCATCGGTATTGCATT
TGCATTGATTGTAGGTCTCGTTCTTGGCCTGGTCATTAGTAAATGGCATT
ATGGGAAAAAACGTCAGGAGAATTTTGTGGacATAGAAAGGAATAACTCC
AAGCATAGCCATATCAACGAAGGCTTTCAATATGACAATCGTAAAAGTAA
AGTCACAAATTAAAATCATCAGTCCCTTCtataatatttatttcattttt
tagaaatgttgataataaaaatttgtaaatatttttcttttgagcaTATT
ATTTATAAGATGTTGATAGTAGACCAAATTTATTTTACCACGTTAAAATT
CTGCattattctatttttattttgatatctGAAACAGTATATTGTATTAC
CCTATGTGTATTTTAtatgttgtattttttttttatcgcTTTAATAAAAT
GTTTTAGCTTGATTTCTATTCCCTTTTGAAAGTATGCAAAAGTATGGCAT
ACTTCTTTCttctgaaaataaaaagctTCGTTATATTATGCTTTCATAGT
CAAAAGACTTTCGCAAATTCCTCATTTTTTGATCtatgaaatttagaaat
tgTTATTGCTCTAAGTTGAGGGCTATGGTACTACAGATCTTTCTGTTGAG
TGGGTAGTTGGATGAGTAAAATAATTCGATTTACATGTGTGTGAGTTTCG
TTATCTTTATGTATTTCCAAGTATTTAGGAAAATGGCACCTctatcaaat
caaaatattttatttatgagAACCTCAAAAGGATCTGATTCATCAATCAT
TCTCTTTATGTCCTGATTCAATTTTAAGATTCATAATATATTTATGATTT
ATATAGAAAAAAGGATATAAAAATTAGACTACTGTACTGTATgtggaaaa
aagaaagaaatatgttttgaaaagtctccATTCCTTTAATATGATGGAAA
AG
Run BLAST on NCBI

transcript from alignment at sc0000066:258111..262371+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006233 ID=TCONS_00006233|Name=TCONS_00006233|organism=Clytia hemisphaerica|type=transcript|length=4261bp|location=Sequence derived from alignment at sc0000066:258111..262371+ (Clytia hemisphaerica)
AATCTTTCAATGGAGCCACGCCTAACATTTAGACTTTAATgtattaattt
taaaataatgtaGTGGTTTGCACGAGATGTTCATTATCAACAGGATCTTA
AAATGAATAGTGATTTGTCTGCAATGTCTTATTTATAAAGGTGAGTTTCG
ATTTCTATAATATACTTTTTTATGGATACGGTTTTTTTGTACCAAATTTG
CATGTTTCATTTTCTAACATGGTGATAACATCATATTTTATTCTGAGATT
CAGCGAAACTTAAAAGAATGTAATTTACAATATTTGATGATTAGGACTTC
TATTATGTCATCATAAGTTTTTGATGTCATCTTTTGTTACTATAATTACT
ACAGTTTAAACAATTTATTGCTTTGCCATGGAAACGTGATGCTCTCTATA
AAACATGCATTCTATTAAGAGAACAGTTAAAAACAATCTTTTTAGTTTCA
ATTATTTATGCCTTTAACTCACTCACTTTCTCTCTGTTAATAGTTGACTT
GTTATCTTATTTCAGAAGATATCTCTTGATGGCTGGACaggcatttttaa
agaaaaatctgCTCACTATcgctttgtttttgttgaatattgaaaatgtg
tTTGTCTCACGTCCACCAATATTCTGGGATCCCTACCATAAATTGTAAGT
AGTTCAATTTCTTATCAAATATCTTTGTGATATCCAAGTTTAACTTTGTT
TTATTAACCTTCCTTTTTGTCTTAATTTTAGGTTTTCCTGCAAGGATCCT
ATTGTGAATGTGAAAGAAAATGATTTGTTGAAATTTGTATGCGCAGATAA
AGATATCTCGTCCAAACCAAATGCACATTCTTCAACCCTTCACGAAGTAG
CTTATCTTCTAGACTACACAAAAGAACAAGAATATGAAAATTGTGATGCT
AGAAGTGAGTTAAAATGAAAGACATCTCTTtgtacaaaagaaattatttt
cattattagGAGATACTCATTTCAGTTgacttaaaacttttaaaataagt
CTTAATTTGGTGAAAGTTGTATATTGAAATTAAATTACTACTTATTCATT
TCTCTTAGATCATGACAATGTATTACTGAACTGCACATCAAAATATATGG
TTACACAACACCGGATCACCCAAAATGCTCTTTCACCTGACGCACCTTCT
TTCACACCTGGAAAGACCTATTATGTGATAGGTAATAAACATTtcctaaa
aaatctttttacaaaatgaaaaagtatAGAAACTATTTGCTAAAGGTCAG
AAATTAAATGAATTGATGCCATCAAAGTTTCTCATTGAAATTCGAATTAT
TTCTCTTTTCAAATAGCTCCAAGTTATCGTACAAGCAACATGATTAATAA
CATGGTTGGTGGAAGTTGCAATGACACATCTGATGGTGGATATCATTTAA
AGCTGAAAGTCCATGTTTGTACTgatcaagaaattcaagatggTGATTGC
AAGTTATGTGAAAGTGAAGGCTGCTATTATGAAGGTCAGTTGTTTATTAG
TCATAATAAGTCTTactgtcaaaaaaatttgtttcctACTGACAGTTTTT
CATTCTCATGCAATTGTTAGGTTGACAATTTTGGTAGAAATATGATGAAA
ACCTGTCCTTGCattcacattatcattgaaaaaaaacttttcttttccct
TACAGCTTGTGGCAAGCAATGTGACGATTGGATTGATCCTGTCGATAATG
ACTGTTACAAACAAAGACTATGCAACAATACACTTTTAAATACACAGTTT
AAAGAATATGAAAAGATTGACAACTGTCAAATCTCTAATAACCCTGCTGT
TACAACAGGTACTTTAAGNGGTTAAATGAAAGACATCTATTtgtacaaaa
gaaattattttcattattagGAGATACTCATTTCAGTTgacttaaaaatt
ttaaaataagtcTTAATTTGGTGAAAGTTGTATATTGAAATTAAATTACT
ACTTATTCATTTCTCTTAGATCATGACAACGTATTACTGAACTGCACATC
AAAATATATGGTTACACAACACCGGATCACCCAAAATGCTCTTTCACCTG
ACGCACCTTCTTTCACACCTGGAAAAACCTATTATGTGATAGGTAATAAA
CATTtcctaaaaaatctttttacaaaatgaaaaagtatAGAAACTATTTG
CTAAAGGTCAGAAATTAAATGAATTGATGCCATCAAAGTTTCTCATTGAA
ATTCGAATTATTTCTCTTTTCAAATAGCTCCAAGTTATCGTACAAGCAAC
ATGATTAATAACATGGTTGGTGGAAGTTGCAATGACACATCTGATGGTGG
ATATCATTTAAAGCTGAAAGTCCATGTTTGTACTgatcaagaaattcaag
atggTGATTGCAAGTTATGTGAAAGTGAAGGCTGCTATTATGAAGGTCAG
TTGTTTATTAGTCATAATAAGTCTTactgtcaaaaaaatttgtttcctAC
TGACAGTTTTTCATTCTCATGCAATTGTTAGGTTGACAATTTTGGTAGAA
ATATGATGAAAACCTGTCCTTGCattcacattatcattgaaaaaaaactt
ttcttttccctTACAGCTTGTGGCAAGCAATGTGATGATTGGATTGATCC
TGTCGATAATGACTGTTACAAACAAAGACTATGCAACAATACACTTTTAA
ATACACAGTTTAAAGAATATGAAAAGATTGACAACTGTCAAATCTCTAAT
AACCCTGCTGTTACAACAGGTACTTTAAGCACAACAGGTGCTTTAAGCAC
AACTGGAAGTGTCAGCACTGTTTACACTGTTAGTACACTCAGCAGCACCA
GCACCACAAGTTCAAGTTCAACCAGTTCAGTCACAGTCAGTCCTGTTCCA
GGTAACTCAGTCAGTAATAATAAGTAATCTAAAAGCTTTGTTTATATGCT
TAAAAGCTAGGTAGCACTTTGACAGTAAACTTATTCTTGAGGTATTTGCC
CAGTATGATGTGTatttatattgaaaattttagtaacagactttttcaag
ttttagtaAACTTTAGATAACTGGATAAATTGAGTTGTTTTAGTTTACCT
TGTACGTCCTTTTTCTTTCAGGTAAAAAAACTGGCGAGGAAAATAATAAG
GATGACTCATACAAATACATGGGCATCGGTATTGCATTTGCATTGATTGT
AGGTCTCGTTCTTGGCCTGGTCATTAGTAAATGGCATTATGGGAAAAAAC
GTCAGGAGAATTTTGTGGGTAAGTTCCCTTAAATTCTTTGCATtcttaaa
tatttctttttatatatgaGCTGACCAGTGCTCAATTAAGCCAATTATAT
ATAGATAAATAGGAAAGTAGGAAAATTGGTAGAGGTACTTTTACCACAGC
TAATACTTTTAATTAATATGACTTATATTGTCTTGACACAGGTTACGTCA
TCCGTTTTTTAGatagaatttctttttctttcatttcagacATAGAAAGG
AATAACTCCAAGCATAGCCATATCAACGAAGGCTTTCAATATGACAATCG
TAAAAGTAAAGTCACAAATTAAAATCATCAGTCCCTTCtataatatttat
ttcattttttagaaatgttgataataaaaatttgtaaatatttttctttt
gagcaTATTATTTATAAGATGTTGATAGTAGACCAAATTTATTTTACCAC
GTTAAAATTCTGCattattctatttttattttgatatctGAAACAGTATA
TTGTATTACCCTATGTGTATTTTAtatgttgtattttttttttatcgcTT
TAATAAAATGTTTTAGCTTGATTTCTATTCCCTTTTGAAAGTATGCAAAA
GTATGGCATACTTCTTTCttctgaaaataaaaagctTCGTTATATTATGC
TTTCATAGTCAAAAGACTTTCGCAAATTCCTCATTTTTTGATCtatgaaa
tttagaaattgTTATTGCTCTAAGTTGAGGGCTATGGTACTACAGATCTT
TCTGTTGAGTGGGTAGTTGGATGAGTAAAATAATTCGATTTACATGTGTG
TGAGTTTCGTTATCTTTATGTATTTCCAAGTATTTAGGAAAATGGCACCT
ctatcaaatcaaaatattttatttatgagAACCTCAAAAGGATCTGATTC
ATCAATCATTCTCTTTATGTCCTGATTCAATTTTAAGATTCATAATATAT
TTATGATTTATATAGAAAAAAGGATATAAAAATTAGACTACTGTACTGTA
TgtggaaaaaagaaagaaatatgttttgaaaagtctccATTCCTTTAATA
TGATGGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003570XLOC_003570Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006233-exon-sc0000066-1491911889:258111..258250TCONS_00006233-exon-sc0000066-1491911889:258111..258250Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1510915933:258111..258250TCONS_00006233-exon-sc0000066-1510915933:258111..258250Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1575043694:258111..258250TCONS_00006233-exon-sc0000066-1575043694:258111..258250Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1491911889:258629..258754TCONS_00006233-exon-sc0000066-1491911889:258629..258754Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1510915933:258629..258754TCONS_00006233-exon-sc0000066-1510915933:258629..258754Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1575043694:258629..258754TCONS_00006233-exon-sc0000066-1575043694:258629..258754Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1491911889:258842..259014TCONS_00006233-exon-sc0000066-1491911889:258842..259014Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1510915933:258842..259014TCONS_00006233-exon-sc0000066-1510915933:258842..259014Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1575043694:258842..259014TCONS_00006233-exon-sc0000066-1575043694:258842..259014Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1491911889:259169..259291TCONS_00006233-exon-sc0000066-1491911889:259169..259291Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1510915933:259169..259291TCONS_00006233-exon-sc0000066-1510915933:259169..259291Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1575043694:259169..259291TCONS_00006233-exon-sc0000066-1575043694:259169..259291Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1491911889:260338..260505TCONS_00006233-exon-sc0000066-1491911889:260338..260505Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1510915933:260338..260505TCONS_00006233-exon-sc0000066-1510915933:260338..260505Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1575043694:260338..260505TCONS_00006233-exon-sc0000066-1575043694:260338..260505Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1491911889:260677..260829TCONS_00006233-exon-sc0000066-1491911889:260677..260829Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1510915933:260677..260829TCONS_00006233-exon-sc0000066-1510915933:260677..260829Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1575043694:260677..260829TCONS_00006233-exon-sc0000066-1575043694:260677..260829Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1491911889:261182..261328TCONS_00006233-exon-sc0000066-1491911889:261182..261328Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1510915933:261182..261328TCONS_00006233-exon-sc0000066-1510915933:261182..261328Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1575043694:261182..261328TCONS_00006233-exon-sc0000066-1575043694:261182..261328Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1491911889:261550..262371TCONS_00006233-exon-sc0000066-1491911889:261550..262371Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1510915933:261550..262371TCONS_00006233-exon-sc0000066-1510915933:261550..262371Clytia hemisphaericaexon
TCONS_00006233-exon-sc0000066-1575043694:261550..262371TCONS_00006233-exon-sc0000066-1575043694:261550..262371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:258111..262371 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0305555	9.5854e-08	22.7454	16.5693	0	0	0	0	0	0	0	0	0	0	1.94828	0.000979643	3.9755	6.75086	4.65626	6.06036	4.6749	4.64788	4.87366	2.4355	0	0	37.4606	14.3259	3.90466	4.74993
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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